8PRNA

E1m, k50a, r52a, d97a, e99a mutant of rh. blastica porin
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
289
structure length
289
Chain Sequence
MISLNGYGRFGLQYVEDRGVGLEDTIISSRLRINIVGTTETDQGVTFGAALAMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTYASAMGYEASSFGDAQSSFFAYNSKYDASGALDNYNGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETVADVGVRFDF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
source organism Rhodobacter blasticus
publication title Porin mutants with new channel properties.
pubmed rcsb
molecule keywords PORIN
total genus 74
structure length 289
sequence length 289
ec nomenclature
pdb deposition date 1998-06-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 8prnA00
3SZVA 1HXXA 4LSEA 2XE5A 1BT9A 1GFMA 4FT6A 3K19A 2ZFGA 3O0EA 3FYXA 2ODJA 3T0SA 1OSMA 1GFNA 3VY8X 4FSPA 4GCSA 2Y0KA 7PRNA 4RJXA 4D5UA 4D64A 1OPFA 3JTYA 2XE1A 4GCPA 1H6S1 4KR8A 2J4UP 3HWBA 5DL5A 3SZDA 4GCQA 4FRTA 5JDPA 1GFOA 4FOZA 1HXTA 4BUMX 3PRNA 2OMFA 4C69X 1GFQA 4LSFA 3POUA 4FRXA 6PRNA 5PRNA 4D65A 3POQA 1MPFA 5DL8A 4FMSA 3SY7A 1HXUA 3VZUX 3HW9A 3VY9X 3T20A 2O4VA 2FGQX 2PORA 3WI4A 2ZLDA 4JFBA 1PHOA 4FSOA 3T24A 1GFPA 3POXA 3UPGA 5DL6A 3SYSA 3VZTX 5FVNA 2J1NA 4RJWA 2K4TA 3PORA 2Y2XA 4KRAA 3SYBA 2Y0HA 3WI5A 2Y0LA 2FGRA 4LSIA 2QTKA 3VZWX 8PRNA 4LSHA 3UU2A 3A2SX 3EMNX 1E54A 2XG6A 5DL7A 3NSGA 2PRNA 2XE2A 4KR4A 4AUIA 1BH3A 1PRNA 3SY9A 2XE3A
chains in the Genus database with same CATH superfamily
2F1VA 3NJTA 3SZVA 1HXXA 1ORMA 2W81C 4AKMA 3AA1A 4LSEA 4AYNA 2XE5A 1BT9A 3LK3A 1GFMA 3AA7B 3KZIO 4FT6A 1ZHTA 3K19A 2ZFGA 3O0EA 3FYXA 2ODJA 4XNLA 1MM5A 3AA0B 1OSMA 1ZHWA 2R4PA 1IZNB 3PF1A 4N75A 3T0SA 4E1SA 1GFNA 1QJ9A 4FSPA 3VY8X 3LK3B 4GCSA 2Y0KA 2R8AA 7PRNA 2MNHA 2M07A 4IL6O 2N2LA 4RJXA 4D5UA 2LFUA 2WJQA 1OPFA 2K0LA 3JTYA 4O4UA 4D64A 2MHLA 2XE1A 3UAQA 5ADXL 4GCPA 2KXPA 4FESA 3HOLA 4GF4A 1H6S1 4O3ZA 4O49A 5G38A 4KR8A 1Q9GA 3JCUO 1P4TA 4AKRA 5G26A 2JMMA 4AYDC 2J4UP 2R4LA 3HWBA 4F4BA 5DL5A 3A0BO 3SZDA 4AZLA 4GCQA 3WU2O 5B5EO 2R89A 2KXPB 4FZNA 4RL9A 2YNKA 5G3AA 4AYID 4FRTA 2X27X 1THQA 2R4OA 5EE2A 5JDPA 1GFOA 3PQSA 4FOZA 4AKRB 2R4NA 1HXTA 1S5LO 4G76A 4Z3TA 3V8UA 4BUMX 1MM4A 2F1CX 1T16A 3PRNA 3AA1B 3VE2A 2M06A 2OMFA 4C69X 3BS0A 4GHBA 1GFQA 2XTQA 4LSFA 3POUA 5AFUL 4FRXA 6PRNA 3AAAA 3LK2A 5ADXK 5D5DA 5IYUA 3RBHA 4O3XB 4PUXA 1YS5A 5PRNA 4D65A 3G7GA 3POQA 4FZMA 3QRAA 1MPFA 1QJPA 2YPVA 4K3CA 5DL8A 4RLCA 4FMSA 5GV0A 2KZ7A 2N2MA 3AAAB 3LK2B 3GP6A 3SY7A 1HXUA 4PR7A 3VZUX 4O3YA 3HW9A 5G39A 3A0HO 4XNKA 2WVPA 3VY9X 3DWNA 4B61A 3T20A 2O4VA 2FGQX 2PORA 3BRZA 4UB8O 5TISO 2ZLDA 4JFBA 3WI4A 3TZGA 4O4XA 1PHOA 4FSOA 4N58A 4E1TA 4RLBA 3T24A 4AYMC 3BRYA 4C00A 1GFPA 3POXA 4O3WA 3UPGA 4G75A 5DL6A 3VE1A 3QRCA 5T5FA 3PGSA 4QQ1A 5KAFO 2WJRA 2F1TA 5H2FO 3SYSA 3PGRA 4PJ0O 3VZTX 5AFUK 2XMXA 3KVDD 2ERVA 5FVNA 2J1NA 2GE4A 4RJWA 2K4TA 2JQYA 4JCHA 3AA6A 2Y2XA 3PORA 4FUVA 4N59A 4KRAA 1G90A 3AA0A 2XTRA 3DWOX 2Y0HA 1IZNA 3C5OA 3LK42 3SYBA 3WI5A 5B66O 2Y0LA 2IWWA 2FGRA 4LSIA 4AFKA 2QTKA 2R88A 4UB6O 3DA4A 5KAIO 4LSHA 3AA6B 3VZWX 8PRNA 1Q9FA 3UU2A 4C4VA 3A2SX 5GTHO 3EMNX 2KZ7B 3AAEA 3PQUA 3DZMA 1QJ8A 1E54A 4K3BA 2XG6A 2Y7SA 5DL7A 3HOEA 3NSGA 2KDYA 2KC0A 3LK41 1ZHXA 2LHFA 4N74A 4AYEC 2PRNA 2XE2A 2X9KA 3DA3A 3PGUA 1BH3A 4KR4A 4AUIA 4C4VB 4U9CA 3AAEB 1PRNA 1ZHZA 2W80C 3AA7A 2AXTO 2IWVA 4FQEA 3SY9A 1T1LA 2XE3A 4CTDA 5E79O 4FZLA 1BXWA 5GTIO 1ZHYA
chains in the Genus database with same CATH topology
2F1VA 3SZVA 1HXXA 1ORMA 2W81C 4AKMA 3AA1A 4LSEA 4AYNA 2XE5A 1BT9A 3LK3A 1GFMA 3AA7B 4FT6A 1ZHTA 3K19A 2ZFGA 3O0EA 3FYXA 2ODJA 4XNLA 1MM5A 3AA0B 1OSMA 1ZHWA 3T0SA 1IZNB 4E1SA 1GFNA 1QJ9A 4FSPA 3VY8X 3LK3B 4GCSA 2Y0KA 7PRNA 2MNHA 2M07A 2N2LA 4RJXA 4D5UA 2LFUA 4D64A 1OPFA 2K0LA 3JTYA 4O4UA 5ADXL 2MHLA 2XE1A 3UAQA 4GCPA 2KXPA 4FESA 3HOLA 4GF4A 1H6S1 4O3ZA 4O49A 4KR8A 1Q9GA 1P4TA 4AKRA 5G26A 2JMMA 4AYDC 2J4UP 3HWBA 4F4BA 5DL5A 3SZDA 4AZLA 4GCQA 4RL9A 2KXPB 4FZNA 4AYID 2YNKA 4FRTA 2X27X 1THQA 5EE2A 5JDPA 1GFOA 3PQSA 4FOZA 4AKRB 1HXTA 4G76A 4Z3TA 3V8UA 4BUMX 1MM4A 3PRNA 3AA1B 3VE2A 2M06A 2OMFA 4C69X 4GHBA 1GFQA 2XTQA 4LSFA 3POUA 5AFUL 4FRXA 6PRNA 3AAAA 3LK2A 5ADXK 5D5DA 5IYUA 3RBHA 4O3XB 4PUXA 1YS5A 5PRNA 4D65A 3G7GA 3POQA 4FZMA 3QRAA 1MPFA 1QJPA 2YPVA 5DL8A 4RLCA 4FMSA 5GV0A 2KZ7A 2N2MA 3AAAB 3LK2B 3GP6A 3SY7A 1HXUA 3VZUX 4O3YA 3HW9A 4XNKA 3VY9X 4B61A 3T20A 2O4VA 2FGQX 2PORA 3WI4A 2ZLDA 4JFBA 3TZGA 4O4XA 1PHOA 4FSOA 4N58A 4E1TA 4RLBA 3T24A 4AYMC 1GFPA 3POXA 4O3WA 3UPGA 4G75A 5DL6A 3VE1A 3QRCA 5T5FA 4QQ1A 2F1TA 3SYSA 3VZTX 5AFUK 2XMXA 3KVDD 2ERVA 5FVNA 2J1NA 2GE4A 4RJWA 2K4TA 4JCHA 3AA6A 2Y2XA 3PORA 4FUVA 4N59A 4KRAA 1G90A 3AA0A 2XTRA 3SYBA 2Y0HA 1IZNA 3C5OA 3LK42 3WI5A 2Y0LA 2FGRA 4LSIA 4AFKA 2QTKA 3DA4A 3VZWX 4LSHA 3AA6B 8PRNA 1Q9FA 3UU2A 3A2SX 3EMNX 2KZ7B 3AAEA 3PQUA 1QJ8A 1E54A 2XG6A 2Y7SA 5DL7A 3HOEA 3NSGA 2KDYA 2KC0A 3LK41 1ZHXA 2LHFA 4AYEC 2PRNA 2XE2A 4KR4A 3DA3A 4AUIA 1BH3A 4U9CA 3AAEB 1PRNA 1ZHZA 2W80C 3AA7A 3SY9A 2XE3A 4FZLA 1BXWA 1ZHYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SZV A;  1HXX A;  4LSE A;  2XE5 A;  1BT9 A;  1GFM A;  4FT6 A;  3K19 A;  2ZFG A;  3O0E A;  3FYX A;  2ODJ A;  3T0S A;  1OSM A;  1GFN A;  3VY8 X;  4FSP A;  4GCS A;  2Y0K A;  7PRN A;  4RJX A;  4D5U A;  4D64 A;  1OPF A;  3JTY A;  2XE1 A;  4GCP A;  1H6S 1;  4KR8 A;  2J4U P;  3HWB A;  5DL5 A;  3SZD A;  4GCQ A;  4FRT A;  5JDP A;  1GFO A;  4FOZ A;  1HXT A;  4BUM X;  3PRN A;  2OMF A;  4C69 X;  1GFQ A;  4LSF A;  3POU A;  4FRX A;  6PRN A;  5PRN A;  4D65 A;  3POQ A;  1MPF A;  5DL8 A;  4FMS A;  3SY7 A;  1HXU A;  3VZU X;  3HW9 A;  3VY9 X;  3T20 A;  2O4V A;  2FGQ X;  2POR A;  3WI4 A;  2ZLD A;  4JFB A;  1PHO A;  4FSO A;  3T24 A;  1GFP A;  3POX A;  3UPG A;  5DL6 A;  3SYS A;  3VZT X;  5FVN A;  2J1N A;  4RJW A;  2K4T A;  3POR A;  2Y2X A;  4KRA A;  3SYB A;  2Y0H A;  3WI5 A;  2Y0L A;  2FGR A;  4LSI A;  2QTK A;  3VZW X;  8PRN A;  4LSH A;  3UU2 A;  3A2S X;  3EMN X;  1E54 A;  2XG6 A;  5DL7 A;  3NSG A;  2PRN A;  2XE2 A;  4KR4 A;  4AUI A;  1BH3 A;  1PRN A;  3SY9 A;  2XE3 A; 
#chains in the Genus database with same CATH topology
 2F1V A;  3NJT A;  3SZV A;  1HXX A;  1ORM A;  2W81 C;  4AKM A;  3AA1 A;  4LSE A;  4AYN A;  2XE5 A;  1BT9 A;  3LK3 A;  1GFM A;  3AA7 B;  3KZI O;  4FT6 A;  1ZHT A;  3K19 A;  2ZFG A;  3O0E A;  3FYX A;  2ODJ A;  4XNL A;  1MM5 A;  3AA0 B;  1OSM A;  1ZHW A;  2R4P A;  1IZN B;  3PF1 A;  4N75 A;  3T0S A;  4E1S A;  1GFN A;  1QJ9 A;  4FSP A;  3VY8 X;  3LK3 B;  4GCS A;  2Y0K A;  2R8A A;  7PRN A;  2MNH A;  2M07 A;  4IL6 O;  2N2L A;  4RJX A;  4D5U A;  2LFU A;  2WJQ A;  1OPF A;  2K0L A;  3JTY A;  4O4U A;  4D64 A;  2MHL A;  2XE1 A;  3UAQ A;  5ADX L;  4GCP A;  2KXP A;  4FES A;  3HOL A;  4GF4 A;  1H6S 1;  4O3Z A;  4O49 A;  5G38 A;  4KR8 A;  1Q9G A;  3JCU O;  1P4T A;  4AKR A;  5G26 A;  2JMM A;  4AYD C;  2J4U P;  2R4L A;  3HWB A;  4F4B A;  5DL5 A;  3A0B O;  3SZD A;  4AZL A;  4GCQ A;  3WU2 O;  5B5E O;  2R89 A;  2KXP B;  4FZN A;  4RL9 A;  2YNK A;  5G3A A;  4AYI D;  4FRT A;  2X27 X;  1THQ A;  2R4O A;  5EE2 A;  5JDP A;  1GFO A;  3PQS A;  4FOZ A;  4AKR B;  2R4N A;  1HXT A;  1S5L O;  4G76 A;  4Z3T A;  3V8U A;  4BUM X;  1MM4 A;  2F1C X;  1T16 A;  3PRN A;  3AA1 B;  3VE2 A;  2M06 A;  2OMF A;  4C69 X;  3BS0 A;  4GHB A;  1GFQ A;  2XTQ A;  4LSF A;  3POU A;  5AFU L;  4FRX A;  6PRN A;  3AAA A;  3LK2 A;  5ADX K;  5D5D A;  5IYU A;  3RBH A;  4O3X B;  4PUX A;  1YS5 A;  5PRN A;  4D65 A;  3G7G A;  3POQ A;  4FZM A;  3QRA A;  1MPF A;  1QJP A;  2YPV A;  4K3C A;  5DL8 A;  4RLC A;  4FMS A;  5GV0 A;  2KZ7 A;  2N2M A;  3AAA B;  3LK2 B;  3GP6 A;  3SY7 A;  1HXU A;  4PR7 A;  3VZU X;  4O3Y A;  3HW9 A;  5G39 A;  3A0H O;  4XNK A;  2WVP A;  3VY9 X;  3DWN A;  4B61 A;  3T20 A;  2O4V A;  2FGQ X;  2POR A;  3BRZ A;  4UB8 O;  5TIS O;  2ZLD A;  4JFB A;  3WI4 A;  3TZG A;  4O4X A;  1PHO A;  4FSO A;  4N58 A;  4E1T A;  4RLB A;  3T24 A;  4AYM C;  3BRY A;  4C00 A;  1GFP A;  3POX A;  4O3W A;  3UPG A;  4G75 A;  5DL6 A;  3VE1 A;  3QRC A;  5T5F A;  3PGS A;  4QQ1 A;  5KAF O;  2WJR A;  2F1T A;  5H2F O;  3SYS A;  3PGR A;  4PJ0 O;  3VZT X;  5AFU K;  2XMX A;  3KVD D;  2ERV A;  5FVN A;  2J1N A;  2GE4 A;  4RJW A;  2K4T A;  2JQY A;  4JCH A;  3AA6 A;  2Y2X A;  3POR A;  4FUV A;  4N59 A;  4KRA A;  1G90 A;  3AA0 A;  2XTR A;  3DWO X;  2Y0H A;  1IZN A;  3C5O A;  3LK4 2;  3SYB A;  3WI5 A;  5B66 O;  2Y0L A;  2IWW A;  2FGR A;  4LSI A;  4AFK A;  2QTK A;  2R88 A;  4UB6 O;  3DA4 A;  5KAI O;  4LSH A;  3AA6 B;  3VZW X;  8PRN A;  1Q9F A;  3UU2 A;  4C4V A;  3A2S X;  5GTH O;  3EMN X;  2KZ7 B;  3AAE A;  3PQU A;  3DZM A;  1QJ8 A;  1E54 A;  4K3B A;  2XG6 A;  2Y7S A;  5DL7 A;  3HOE A;  3NSG A;  2KDY A;  2KC0 A;  3LK4 1;  1ZHX A;  2LHF A;  4N74 A;  4AYE C;  2PRN A;  2XE2 A;  2X9K A;  3DA3 A;  3PGU A;  1BH3 A;  4KR4 A;  4AUI A;  4C4V B;  4U9C A;  3AAE B;  1PRN A;  1ZHZ A;  2W80 C;  3AA7 A;  2AXT O;  2IWV A;  4FQE A;  3SY9 A;  1T1L A;  2XE3 A;  4CTD A;  5E79 O;  4FZL A;  1BXW A;  5GTI O;  1ZHY A; 
#chains in the Genus database with same CATH homology
 2F1V A;  3SZV A;  1HXX A;  1ORM A;  2W81 C;  4AKM A;  3AA1 A;  4LSE A;  4AYN A;  2XE5 A;  1BT9 A;  3LK3 A;  1GFM A;  3AA7 B;  4FT6 A;  1ZHT A;  3K19 A;  2ZFG A;  3O0E A;  3FYX A;  2ODJ A;  4XNL A;  1MM5 A;  3AA0 B;  1OSM A;  1ZHW A;  3T0S A;  1IZN B;  4E1S A;  1GFN A;  1QJ9 A;  4FSP A;  3VY8 X;  3LK3 B;  4GCS A;  2Y0K A;  7PRN A;  2MNH A;  2M07 A;  2N2L A;  4RJX A;  4D5U A;  2LFU A;  4D64 A;  1OPF A;  2K0L A;  3JTY A;  4O4U A;  5ADX L;  2MHL A;  2XE1 A;  3UAQ A;  4GCP A;  2KXP A;  4FES A;  3HOL A;  4GF4 A;  1H6S 1;  4O3Z A;  4O49 A;  4KR8 A;  1Q9G A;  1P4T A;  4AKR A;  5G26 A;  2JMM A;  4AYD C;  2J4U P;  3HWB A;  4F4B A;  5DL5 A;  3SZD A;  4AZL A;  4GCQ A;  4RL9 A;  2KXP B;  4FZN A;  4AYI D;  2YNK A;  4FRT A;  2X27 X;  1THQ A;  5EE2 A;  5JDP A;  1GFO A;  3PQS A;  4FOZ A;  4AKR B;  1HXT A;  4G76 A;  4Z3T A;  3V8U A;  4BUM X;  1MM4 A;  3PRN A;  3AA1 B;  3VE2 A;  2M06 A;  2OMF A;  4C69 X;  4GHB A;  1GFQ A;  2XTQ A;  4LSF A;  3POU A;  5AFU L;  4FRX A;  6PRN A;  3AAA A;  3LK2 A;  5ADX K;  5D5D A;  5IYU A;  3RBH A;  4O3X B;  4PUX A;  1YS5 A;  5PRN A;  4D65 A;  3G7G A;  3POQ A;  4FZM A;  3QRA A;  1MPF A;  1QJP A;  2YPV A;  5DL8 A;  4RLC A;  4FMS A;  5GV0 A;  2KZ7 A;  2N2M A;  3AAA B;  3LK2 B;  3GP6 A;  3SY7 A;  1HXU A;  3VZU X;  4O3Y A;  3HW9 A;  4XNK A;  3VY9 X;  4B61 A;  3T20 A;  2O4V A;  2FGQ X;  2POR A;  3WI4 A;  2ZLD A;  4JFB A;  3TZG A;  4O4X A;  1PHO A;  4FSO A;  4N58 A;  4E1T A;  4RLB A;  3T24 A;  4AYM C;  1GFP A;  3POX A;  4O3W A;  3UPG A;  4G75 A;  5DL6 A;  3VE1 A;  3QRC A;  5T5F A;  4QQ1 A;  2F1T A;  3SYS A;  3VZT X;  5AFU K;  2XMX A;  3KVD D;  2ERV A;  5FVN A;  2J1N A;  2GE4 A;  4RJW A;  2K4T A;  4JCH A;  3AA6 A;  2Y2X A;  3POR A;  4FUV A;  4N59 A;  4KRA A;  1G90 A;  3AA0 A;  2XTR A;  3SYB A;  2Y0H A;  1IZN A;  3C5O A;  3LK4 2;  3WI5 A;  2Y0L A;  2FGR A;  4LSI A;  4AFK A;  2QTK A;  3DA4 A;  3VZW X;  4LSH A;  3AA6 B;  8PRN A;  1Q9F A;  3UU2 A;  3A2S X;  3EMN X;  2KZ7 B;  3AAE A;  3PQU A;  1QJ8 A;  1E54 A;  2XG6 A;  2Y7S A;  5DL7 A;  3HOE A;  3NSG A;  2KDY A;  2KC0 A;  3LK4 1;  1ZHX A;  2LHF A;  4AYE C;  2PRN A;  2XE2 A;  4KR4 A;  3DA3 A;  4AUI A;  1BH3 A;  4U9C A;  3AAE B;  1PRN A;  1ZHZ A;  2W80 C;  3AA7 A;  3SY9 A;  2XE3 A;  4FZL A;  1BXW A;  1ZHY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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