8PRNA

E1m, k50a, r52a, d97a, e99a mutant of rh. blastica porin
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
289
structure length
289
Chain Sequence
b'MISLNGYGRFGLQYVEDRGVGLEDTIISSRLRINIVGTTETDQGVTFGAALAMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTYASAMGYEASSFGDAQSSFFAYNSKYDASGALDNYNGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETVADVGVRFDF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Porin mutants with new channel properties.
pubmed rcsb
molecule keywords PORIN
source organism Rhodobacter blasticus
molecule tags Membrane protein
total genus 74
structure length 289
sequence length 289
ec nomenclature
pdb deposition date 1998-06-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 8prnA00
2XG6A 4LSHA 2Y0HA 3T20A 5DL6A 3VZTX 4AUIA 2Y0KA 3SYBA 1E54A 3VY9X 3VZUX 3POXA 4RJWA 3WI4A 6PRNA 1GFMA 4FRXA 1GFQA 4FSPA 3SYSA 2ZFGA 1OPFA 4GCQA 2Y0LA 1GFNA 1H6S1 2XE2A 3EMNX 3VZWX 1GFPA 2XE5A 2J1NA 4FSOA 4LSEA 4D64A 5JDPA 1HXXA 2O4VA 3UU2A 2ZLDA 2FGRA 4FMSA 3SZDA 4LSIA 5DL8A 2Y2XA 3PRNA 1HXTA 3T0SA 4JFBA 7PRNA 2OMFA 5DL7A 4RJXA 1PRNA 3WI5A 2XE3A 4D65A 4GCSA 3HW9A 8PRNA 3VY8X 2J4UP 3POQA 1OSMA 3SY7A 4C69X 4KR4A 3POUA 1MPFA 3T24A 2ODJA 2XE1A 4KR8A 3FYXA 2FGQX 5DL5A 3UPGA 4D5UA 1BT9A 2K4TA 1PHOA 3NSGA 5FVNA 3SY9A 2QTKA 4LSFA 3JTYA 3O0EA 4KRAA 2PRNA 4BUMX 1GFOA 1HXUA 3A2SX 4GCPA 4FRTA 3HWBA 1BH3A 2PORA 5PRNA 3SZVA 3PORA 4FOZA 3K19A 4FT6A
chains in the Genus database with same CATH superfamily
2XG6A 2N2LA 3AA7A 2ERVA 4FZMA 4LSHA 4O3XB 2GE4A 2JMMA 2Y0HA 3QRAA 5AFUL 2IWVA 5DL6A 3T20A 2F1TA 3LK41 4RLCA 2M06A 1IZNA 3VZTX 4AUIA 3KZIO 4CTDA 4AYDC 5B66O 2Y0KA 5EE2A 3PGUA 2X27X 5E79O 2KXPB 3SYBA 3JCUO 3TZGA 1E54A 3VY9X 4B61A 2LHFA 2Y7SA 5B5EO 3VZUX 3POXA 5G39A 4RL9A 4K3BA 3HOEA 3C5OA 3DZMA 4RJWA 3G7GA 3WI4A 1ZHZA 3BRYA 6PRNA 1GFMA 2AXTO 1GFQA 1ZHYA 3DA3A 3LK3B 4FRXA 4FSPA 3SYSA 2ZFGA 4AYEC 1OPFA 4XNKA 4GCQA 5KAIO 5ADXK 4AZLA 4C00A 4FZLA 1IZNB 4XNLA 2Y0LA 1GFNA 1H6S1 2XE2A 3EMNX 3BRZA 3VZWX 1Q9FA 3LK3A 1GFPA 4AYNA 2XE5A 5D5DA 2J1NA 4FSOA 4LSEA 2F1CX 3BS0A 4N75A 4D64A 4QQ1A 2JQYA 5JDPA 3PGRA 1HXXA 2O4VA 3AAAB 3LK42 2R4LA 2KDYA 5H2FO 1T1LA 4AKRB 1YS5A 4O4XA 2KZ7B 2R8AA 5T5FA 1P4TA 3UU2A 2ZLDA 4C4VB 2FGRA 4FMSA 3SZDA 5ADXL 4LSIA 5KAFO 1ZHTA 5DL8A 2Y2XA 3AAAA 3NJTA 1HXTA 3AA0B 2M07A 3PRNA 1ZHXA 2YPVA 3T0SA 4JFBA 4AKRA 1MM5A 4N58A 2R89A 4AYMC 2KC0A 2KZ7A 3PGSA 3VE1A 7PRNA 2OMFA 5GTHO 2X9KA 4C4VA 2MHLA 1MM4A 5DL7A 4O49A 3RBHA 1QJ9A 4K3CA 4RJXA 4FQEA 5GTIO 1PRNA 3DA4A 3AA0A 1G90A 4G75A 3AA6B 3WI5A 2XE3A 4D65A 2K0LA 3A0BO 4JCHA 2XMXA 4FESA 5G26A 5GV0A 5G3AA 2IWWA 3KVDD 4GCSA 4PJ0O 3HW9A 4GF4A 8PRNA 2F1VA 2W80C 3VY8X 1ORMA 2J4UP 1ZHWA 4RLBA 3DWNA 1OSMA 3POQA 4GHBA 4PUXA 3SY7A 5IYUA 2N2MA 2LFUA 3AA6A 4C69X 4KR4A 5G38A 2XTQA 1MPFA 3POUA 4O3ZA 3T24A 4O3YA 2ODJA 2R4OA 2W81C 2XE1A 4KR8A 4N59A 4UB8O 4E1SA 4FZNA 3WU2O 4U9CA 1T16A 3FYXA 2WJRA 2FGQX 5DL5A 3UPGA 4D5UA 1BT9A 3GP6A 3HOLA 3LK2B 2XTRA 2K4TA 4N74A 1PHOA 3NSGA 3PQUA 5FVNA 2MNHA 3PQSA 3SY9A 5AFUK 1S5LO 4G76A 4IL6O 4F4BA 2QTKA 3A0HO 3AA1B 4LSFA 1BXWA 5TISO 3LK2A 4FUVA 4PR7A 4UB6O 1QJ8A 3JTYA 4AYID 3PF1A 4E1TA 4O4UA 3UAQA 3O0EA 1QJPA 4KRAA 3DWOX 2PRNA 4BUMX 3AAEB 4AKMA 1GFOA 2R4PA 1HXUA 2WVPA 2KXPA 3QRCA 3AA7B 4O3WA 3A2SX 4FRTA 3AA1A 4GCPA 3HWBA 3VE2A 1BH3A 1THQA 2PORA 5PRNA 2R4NA 3SZVA 1Q9GA 3V8UA 2YNKA 4Z3TA 2R88A 3PORA 2WJQA 4FOZA 3AAEA 4AFKA 3K19A 4FT6A
chains in the Genus database with same CATH topology
2XG6A 2N2LA 3AA7A 2ERVA 4FZMA 4LSHA 4O3XB 2GE4A 2JMMA 2Y0HA 3QRAA 5AFUL 5DL6A 3T20A 2F1TA 3LK41 4RLCA 2M06A 1IZNA 3VZTX 4AUIA 4AYDC 2Y0KA 5EE2A 2X27X 2KXPB 3SYBA 3TZGA 1E54A 3VY9X 4B61A 2LHFA 2Y7SA 3VZUX 3POXA 4RL9A 3HOEA 3C5OA 4RJWA 3G7GA 3WI4A 1ZHZA 6PRNA 1GFMA 3DA3A 1GFQA 1ZHYA 3LK3B 4FRXA 4FSPA 3SYSA 2ZFGA 4AYEC 1OPFA 4XNKA 4GCQA 5ADXK 4AZLA 4FZLA 1IZNB 4XNLA 2Y0LA 1GFNA 1H6S1 2XE2A 3EMNX 3VZWX 1Q9FA 3LK3A 1GFPA 4AYNA 2XE5A 5D5DA 2J1NA 4FSOA 4LSEA 4D64A 4QQ1A 5JDPA 1HXXA 2O4VA 3AAAB 3LK42 2KDYA 4AKRB 1YS5A 4O4XA 2KZ7B 5T5FA 1P4TA 3UU2A 2ZLDA 2FGRA 4FMSA 3SZDA 5ADXL 4LSIA 1ZHTA 5DL8A 2Y2XA 3AAAA 3PRNA 1HXTA 3AA0B 2M07A 1ZHXA 2YPVA 3T0SA 4JFBA 4AKRA 1MM5A 4N58A 4AYMC 7PRNA 2KC0A 2KZ7A 3VE1A 2OMFA 2MHLA 1MM4A 5DL7A 4O49A 3RBHA 1QJ9A 4RJXA 1PRNA 3DA4A 3AA0A 1G90A 4G75A 3AA6B 3WI5A 2XE3A 4D65A 2K0LA 4JCHA 5G26A 2XMXA 4FESA 5GV0A 3KVDD 4GCSA 3HW9A 4GF4A 8PRNA 2F1VA 2W80C 3VY8X 1ORMA 2J4UP 1ZHWA 4RLBA 3POQA 1OSMA 4GHBA 4PUXA 3SY7A 5IYUA 2N2MA 2LFUA 3AA6A 4C69X 4KR4A 2XTQA 1MPFA 3POUA 4O3ZA 3T24A 4O3YA 2ODJA 2W81C 2XE1A 4KR8A 4N59A 4E1SA 4FZNA 4U9CA 3FYXA 2FGQX 5DL5A 3UPGA 4D5UA 1BT9A 3GP6A 3HOLA 3LK2B 2XTRA 2K4TA 1PHOA 3NSGA 3PQUA 5FVNA 2MNHA 3PQSA 3SY9A 5AFUK 4G76A 4F4BA 2QTKA 3AA1B 4LSFA 1BXWA 3LK2A 4FUVA 1QJ8A 3JTYA 4AYID 4E1TA 4O4UA 3UAQA 3O0EA 1QJPA 4KRAA 2PRNA 4BUMX 3AAEB 4AKMA 1GFOA 1HXUA 2KXPA 3QRCA 3AA7B 4O3WA 3A2SX 4FRTA 3AA1A 4GCPA 3HWBA 3VE2A 1BH3A 1THQA 2PORA 5PRNA 3SZVA 1Q9GA 3V8UA 2YNKA 4Z3TA 3PORA 4FOZA 3AAEA 4AFKA 3K19A 4FT6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XG6 A;  4LSH A;  2Y0H A;  3T20 A;  5DL6 A;  3VZT X;  4AUI A;  2Y0K A;  3SYB A;  1E54 A;  3VY9 X;  3VZU X;  3POX A;  4RJW A;  3WI4 A;  6PRN A;  1GFM A;  4FRX A;  1GFQ A;  4FSP A;  3SYS A;  2ZFG A;  1OPF A;  4GCQ A;  2Y0L A;  1GFN A;  1H6S 1;  2XE2 A;  3EMN X;  3VZW X;  1GFP A;  2XE5 A;  2J1N A;  4FSO A;  4LSE A;  4D64 A;  5JDP A;  1HXX A;  2O4V A;  3UU2 A;  2ZLD A;  2FGR A;  4FMS A;  3SZD A;  4LSI A;  5DL8 A;  2Y2X A;  3PRN A;  1HXT A;  3T0S A;  4JFB A;  7PRN A;  2OMF A;  5DL7 A;  4RJX A;  1PRN A;  3WI5 A;  2XE3 A;  4D65 A;  4GCS A;  3HW9 A;  8PRN A;  3VY8 X;  2J4U P;  3POQ A;  1OSM A;  3SY7 A;  4C69 X;  4KR4 A;  3POU A;  1MPF A;  3T24 A;  2ODJ A;  2XE1 A;  4KR8 A;  3FYX A;  2FGQ X;  5DL5 A;  3UPG A;  4D5U A;  1BT9 A;  2K4T A;  1PHO A;  3NSG A;  5FVN A;  3SY9 A;  2QTK A;  4LSF A;  3JTY A;  3O0E A;  4KRA A;  2PRN A;  4BUM X;  1GFO A;  1HXU A;  3A2S X;  4GCP A;  4FRT A;  3HWB A;  1BH3 A;  2POR A;  5PRN A;  3SZV A;  3POR A;  4FOZ A;  3K19 A;  4FT6 A; 
#chains in the Genus database with same CATH topology
 2XG6 A;  2N2L A;  3AA7 A;  2ERV A;  4FZM A;  4LSH A;  4O3X B;  2GE4 A;  2JMM A;  2Y0H A;  3QRA A;  5AFU L;  2IWV A;  5DL6 A;  3T20 A;  2F1T A;  3LK4 1;  4RLC A;  2M06 A;  1IZN A;  3VZT X;  4AUI A;  3KZI O;  4CTD A;  4AYD C;  5B66 O;  2Y0K A;  5EE2 A;  3PGU A;  2X27 X;  5E79 O;  2KXP B;  3SYB A;  3JCU O;  3TZG A;  1E54 A;  3VY9 X;  4B61 A;  2LHF A;  2Y7S A;  5B5E O;  3VZU X;  3POX A;  5G39 A;  4RL9 A;  4K3B A;  3HOE A;  3C5O A;  3DZM A;  4RJW A;  3G7G A;  3WI4 A;  1ZHZ A;  3BRY A;  6PRN A;  1GFM A;  2AXT O;  1GFQ A;  1ZHY A;  3DA3 A;  3LK3 B;  4FRX A;  4FSP A;  3SYS A;  2ZFG A;  4AYE C;  1OPF A;  4XNK A;  4GCQ A;  5KAI O;  5ADX K;  4AZL A;  4C00 A;  4FZL A;  1IZN B;  4XNL A;  2Y0L A;  1GFN A;  1H6S 1;  2XE2 A;  3EMN X;  3BRZ A;  3VZW X;  1Q9F A;  3LK3 A;  1GFP A;  4AYN A;  2XE5 A;  5D5D A;  2J1N A;  4FSO A;  4LSE A;  2F1C X;  3BS0 A;  4N75 A;  4D64 A;  4QQ1 A;  2JQY A;  5JDP A;  3PGR A;  1HXX A;  2O4V A;  3AAA B;  3LK4 2;  2R4L A;  2KDY A;  5H2F O;  1T1L A;  4AKR B;  1YS5 A;  4O4X A;  2KZ7 B;  2R8A A;  5T5F A;  1P4T A;  3UU2 A;  2ZLD A;  4C4V B;  2FGR A;  4FMS A;  3SZD A;  5ADX L;  4LSI A;  5KAF O;  1ZHT A;  5DL8 A;  2Y2X A;  3AAA A;  3NJT A;  1HXT A;  3AA0 B;  2M07 A;  3PRN A;  1ZHX A;  2YPV A;  3T0S A;  4JFB A;  4AKR A;  1MM5 A;  4N58 A;  2R89 A;  4AYM C;  2KC0 A;  2KZ7 A;  3PGS A;  3VE1 A;  7PRN A;  2OMF A;  5GTH O;  2X9K A;  4C4V A;  2MHL A;  1MM4 A;  5DL7 A;  4O49 A;  3RBH A;  1QJ9 A;  4K3C A;  4RJX A;  4FQE A;  5GTI O;  1PRN A;  3DA4 A;  3AA0 A;  1G90 A;  4G75 A;  3AA6 B;  3WI5 A;  2XE3 A;  4D65 A;  2K0L A;  3A0B O;  4JCH A;  2XMX A;  4FES A;  5G26 A;  5GV0 A;  5G3A A;  2IWW A;  3KVD D;  4GCS A;  4PJ0 O;  3HW9 A;  4GF4 A;  8PRN A;  2F1V A;  2W80 C;  3VY8 X;  1ORM A;  2J4U P;  1ZHW A;  4RLB A;  3DWN A;  1OSM A;  3POQ A;  4GHB A;  4PUX A;  3SY7 A;  5IYU A;  2N2M A;  2LFU A;  3AA6 A;  4C69 X;  4KR4 A;  5G38 A;  2XTQ A;  1MPF A;  3POU A;  4O3Z A;  3T24 A;  4O3Y A;  2ODJ A;  2R4O A;  2W81 C;  2XE1 A;  4KR8 A;  4N59 A;  4UB8 O;  4E1S A;  4FZN A;  3WU2 O;  4U9C A;  1T16 A;  3FYX A;  2WJR A;  2FGQ X;  5DL5 A;  3UPG A;  4D5U A;  1BT9 A;  3GP6 A;  3HOL A;  3LK2 B;  2XTR A;  2K4T A;  4N74 A;  1PHO A;  3NSG A;  3PQU A;  5FVN A;  2MNH A;  3PQS A;  3SY9 A;  5AFU K;  1S5L O;  4G76 A;  4IL6 O;  4F4B A;  2QTK A;  3A0H O;  3AA1 B;  4LSF A;  1BXW A;  5TIS O;  3LK2 A;  4FUV A;  4PR7 A;  4UB6 O;  1QJ8 A;  3JTY A;  4AYI D;  3PF1 A;  4E1T A;  4O4U A;  3UAQ A;  3O0E A;  1QJP A;  4KRA A;  3DWO X;  2PRN A;  4BUM X;  3AAE B;  4AKM A;  1GFO A;  2R4P A;  1HXU A;  2WVP A;  2KXP A;  3QRC A;  3AA7 B;  4O3W A;  3A2S X;  4FRT A;  3AA1 A;  4GCP A;  3HWB A;  3VE2 A;  1BH3 A;  1THQ A;  2POR A;  5PRN A;  2R4N A;  3SZV A;  1Q9G A;  3V8U A;  2YNK A;  4Z3T A;  2R88 A;  3POR A;  2WJQ A;  4FOZ A;  3AAE A;  4AFK A;  3K19 A;  4FT6 A; 
#chains in the Genus database with same CATH homology
 2XG6 A;  2N2L A;  3AA7 A;  2ERV A;  4FZM A;  4LSH A;  4O3X B;  2GE4 A;  2JMM A;  2Y0H A;  3QRA A;  5AFU L;  5DL6 A;  3T20 A;  2F1T A;  3LK4 1;  4RLC A;  2M06 A;  1IZN A;  3VZT X;  4AUI A;  4AYD C;  2Y0K A;  5EE2 A;  2X27 X;  2KXP B;  3SYB A;  3TZG A;  1E54 A;  3VY9 X;  4B61 A;  2LHF A;  2Y7S A;  3VZU X;  3POX A;  4RL9 A;  3HOE A;  3C5O A;  4RJW A;  3G7G A;  3WI4 A;  1ZHZ A;  6PRN A;  1GFM A;  3DA3 A;  1GFQ A;  1ZHY A;  3LK3 B;  4FRX A;  4FSP A;  3SYS A;  2ZFG A;  4AYE C;  1OPF A;  4XNK A;  4GCQ A;  5ADX K;  4AZL A;  4FZL A;  1IZN B;  4XNL A;  2Y0L A;  1GFN A;  1H6S 1;  2XE2 A;  3EMN X;  3VZW X;  1Q9F A;  3LK3 A;  1GFP A;  4AYN A;  2XE5 A;  5D5D A;  2J1N A;  4FSO A;  4LSE A;  4D64 A;  4QQ1 A;  5JDP A;  1HXX A;  2O4V A;  3AAA B;  3LK4 2;  2KDY A;  4AKR B;  1YS5 A;  4O4X A;  2KZ7 B;  5T5F A;  1P4T A;  3UU2 A;  2ZLD A;  2FGR A;  4FMS A;  3SZD A;  5ADX L;  4LSI A;  1ZHT A;  5DL8 A;  2Y2X A;  3AAA A;  3PRN A;  1HXT A;  3AA0 B;  2M07 A;  1ZHX A;  2YPV A;  3T0S A;  4JFB A;  4AKR A;  1MM5 A;  4N58 A;  4AYM C;  7PRN A;  2KC0 A;  2KZ7 A;  3VE1 A;  2OMF A;  2MHL A;  1MM4 A;  5DL7 A;  4O49 A;  3RBH A;  1QJ9 A;  4RJX A;  1PRN A;  3DA4 A;  3AA0 A;  1G90 A;  4G75 A;  3AA6 B;  3WI5 A;  2XE3 A;  4D65 A;  2K0L A;  4JCH A;  5G26 A;  2XMX A;  4FES A;  5GV0 A;  3KVD D;  4GCS A;  3HW9 A;  4GF4 A;  8PRN A;  2F1V A;  2W80 C;  3VY8 X;  1ORM A;  2J4U P;  1ZHW A;  4RLB A;  3POQ A;  1OSM A;  4GHB A;  4PUX A;  3SY7 A;  5IYU A;  2N2M A;  2LFU A;  3AA6 A;  4C69 X;  4KR4 A;  2XTQ A;  1MPF A;  3POU A;  4O3Z A;  3T24 A;  4O3Y A;  2ODJ A;  2W81 C;  2XE1 A;  4KR8 A;  4N59 A;  4E1S A;  4FZN A;  4U9C A;  3FYX A;  2FGQ X;  5DL5 A;  3UPG A;  4D5U A;  1BT9 A;  3GP6 A;  3HOL A;  3LK2 B;  2XTR A;  2K4T A;  1PHO A;  3NSG A;  3PQU A;  5FVN A;  2MNH A;  3PQS A;  3SY9 A;  5AFU K;  4G76 A;  4F4B A;  2QTK A;  3AA1 B;  4LSF A;  1BXW A;  3LK2 A;  4FUV A;  1QJ8 A;  3JTY A;  4AYI D;  4E1T A;  4O4U A;  3UAQ A;  3O0E A;  1QJP A;  4KRA A;  2PRN A;  4BUM X;  3AAE B;  4AKM A;  1GFO A;  1HXU A;  2KXP A;  3QRC A;  3AA7 B;  4O3W A;  3A2S X;  4FRT A;  3AA1 A;  4GCP A;  3HWB A;  3VE2 A;  1BH3 A;  1THQ A;  2POR A;  5PRN A;  3SZV A;  1Q9G A;  3V8U A;  2YNK A;  4Z3T A;  3POR A;  4FOZ A;  3AAE A;  4AFK A;  3K19 A;  4FT6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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