4GF4A

Low ph structure of pseudomonas putida oprb
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
418
structure length
299
Chain Sequence
FSSESKWMTGDWGGTRTELLDKGYDFTLDYVGEVAGNLDDKTARYSDQFALGAHLDLQKILGWHDAEFKLAITERSGRNLSNDRFSSVQEVWGRGQTWRLTQMWIKQKYFDGALDVKFGRFGEGEDFNSNWPVSQWALRVKYNITPAFFVQVGAFEQTKGAIMPMEAVWSPKVNGLPGEYRLGYYYSTSKHGWWVVAQQQVTAHGGDVNRGLSLFANFTVHDKVDNYQQVGLVYKGAFDARPKDDIGFGVARIHVNQRTEYNAELYYGFHVTNWLTVRPNLQYIKSNALVAGMKMQSSF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for outer membrane sugar uptake in pseudomonads.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Transport protein
molecule keywords Porin B
total genus 75
structure length 299
sequence length 418
ec nomenclature
pdb deposition date 2012-08-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04966 OprB Carbohydrate-selective porin, OprB family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.180 Mainly Beta Beta Barrel Porin Porin 4gf4A00
4GF4A
chains in the Genus database with same CATH superfamily
2M07A 2R4NA 3C5OA 3LK41 3POUA 4FZMA 4JCHA 4K3CA 1THQA 4O4UA 3NSGA 2R8AA 4FESA 2Y0LA 1OPFA 2J1NA 4AUIA 3PRNA 3PF1A 3POQA 3SY7A 2F1CX 3PQSA 8PRNA 4UB8O 4AKRB 5DL5A 2XE5A 2MNHA 3VE1A 2F1TA 3BRYA 3AAEA 4AYMC 1ZHTA 3JCUO 2YNKA 1GFPA 3BS0A 4RL9A 3WU2O 2ERVA 3SYBA 3NJTA 2GE4A 4O4XA 3G7GA 3LK3B 5GTHO 3JTYA 3SZVA 2JMMA 1QJ9A 4D64A 3EMNX 3AAAB 4LSFA 2ODJA 4C69X 5KAIO 1PRNA 1PHOA 4AYNA 3PORA 4FUVA 4O49A 4AYDC 7PRNA 2X9KA 3T24A 2PORA 2F1VA 4FT6A 4N75A 4C00A 2JQYA 5ADXL 4AZLA 2KC0A 3LK3A 3A2SX 2W81C 4GCPA 3AA0A 2XTQA 1S5LO 3HOLA 1ZHWA 3RBHA 1GFNA 2XTRA 3SY9A 4E1SA 2R88A 1GFQA 2KXPA 3LK2B 5ADXK 4LSEA 4Z3TA 5G26A 1ORMA 3WI5A 3K19A 5H2FO 2M06A 1IZNA 2ZLDA 1G90A 2WJRA 5DL8A 4BUMX 2WJQA 3AA7B 2KZ7B 4FRTA 1Q9FA 4FZNA 4FZLA 3DWNA 1P4TA 3POXA 4KR4A 4FQEA 5B66O 2IWWA 3AA6A 1IZNB 3GP6A 4N59A 1MM4A 4FRXA 4RJXA 2R4PA 4RLBA 4AKMA 4AFKA 3A0BO 1GFMA 5B5EO 4FSPA 3HW9A 2N2MA 3VY9X 1BH3A 1OSMA 3PGUA 4GHBA 4IL6O 3HOEA 4O3WA 1GFOA 1HXTA 4PR7A 4LSHA 5T5FA 2KZ7A 3VE2A 3AA7A 4E1TA 2OMFA 1T16A 2K4TA 4U9CA 4CTDA 2WVPA 2R89A 3AA0B 2Y7SA 2R4OA 3SZDA 3VZTX 5PRNA 3FYXA 3QRAA 4QQ1A 5DL6A 4F4BA 5G38A 3TZGA 4AYID 4LSIA 3PGSA 4FSOA 4KR8A 2ZFGA 2KXPB 3AA1A 1H6S1 1BXWA 3LK2A 3SYSA 4RLCA 3KZIO 6PRNA 3O0EA 4G75A 3PQUA 2XE1A 3VZUX 4XNLA 4C4VA 5GV0A 2AXTO 1QJ8A 5E79O 1ZHXA 4GF4A 4KRAA 3QRCA 3VZWX 3UPGA 5AFUL 1ZHYA 4O3ZA 4PUXA 2QTKA 4G76A 5AFUK 2XE3A 4N74A 2FGQX 4C4VB 3BRZA 1MPFA 5GTIO 3VY8X 4RJWA 3LK42 1ZHZA 1HXXA 2Y2XA 3AAAA 3AAEB 2Y0KA 5IYUA 3AA1B 4UB6O 1QJPA 3DA4A 2KDYA 4GCSA 4AKRA 2XE2A 5G3AA 4PJ0O 2W80C 3HWBA 1BT9A 3PGRA 3DZMA 2IWVA 4K3BA 3AA6B 5KAFO 3T20A 3KVDD 5FVNA 2O4VA 4O3YA 2XMXA 5D5DA 2K0LA 5TISO 2FGRA 3WI4A 4AYEC 4FMSA 1T1LA 3V8UA 5JDPA 2MHLA 1MM5A 4N58A 4D5UA 4O3XB 2Y0HA 5G39A 1E54A 2LFUA 3UAQA 2X27X 3UU2A 1Q9GA 2XG6A 4GCQA 2YPVA 1HXUA 1YS5A 4XNKA 3DA3A 2PRNA 4JFBA 5DL7A 4FOZA 4D65A 2LHFA 3T0SA 2N2LA 3A0HO 3DWOX 4B61A 2J4UP 5EE2A 2R4LA
chains in the Genus database with same CATH topology
2M07A 3LK41 3C5OA 3POUA 4JCHA 4FZMA 1THQA 4O4UA 3NSGA 4FESA 2Y0LA 1OPFA 2J1NA 4AUIA 3PRNA 3POQA 3SY7A 3PQSA 8PRNA 4AKRB 5DL5A 2XE5A 2MNHA 3VE1A 2F1TA 3AAEA 4AYMC 1ZHTA 2YNKA 1GFPA 4RL9A 2ERVA 3SYBA 2GE4A 4O4XA 3G7GA 3LK3B 3JTYA 3SZVA 2JMMA 1QJ9A 4D64A 3EMNX 3AAAB 4LSFA 2ODJA 4C69X 1PRNA 1PHOA 4AYNA 3PORA 4FUVA 4O49A 4AYDC 7PRNA 3T24A 2PORA 2F1VA 4FT6A 5ADXL 4AZLA 2KC0A 3LK3A 3A2SX 2W81C 4GCPA 3AA0A 2XTQA 3HOLA 3SY9A 1ZHWA 3RBHA 1GFNA 2XTRA 4E1SA 1GFQA 2KXPA 3LK2B 5ADXK 4LSEA 4Z3TA 5G26A 1ORMA 3WI5A 3K19A 2M06A 1IZNA 2ZLDA 1G90A 5DL8A 4BUMX 3AA7B 2KZ7B 4FRTA 1Q9FA 4FZNA 4FZLA 1P4TA 3POXA 4KR4A 3AA6A 1IZNB 3GP6A 4N59A 1MM4A 4FRXA 4RJXA 4AKMA 4RLBA 4AFKA 1GFMA 4FSPA 3HW9A 2N2MA 3VY9X 1BH3A 1OSMA 4GHBA 4O3WA 3HOEA 1GFOA 1HXTA 5T5FA 4LSHA 3VE2A 2KZ7A 3AA7A 4E1TA 2OMFA 2K4TA 4U9CA 3AA0B 3VZTX 2Y7SA 3SZDA 5PRNA 3FYXA 3QRAA 4QQ1A 5DL6A 4F4BA 3TZGA 4AYID 4LSIA 4FSOA 4KR8A 2ZFGA 2KXPB 3AA1A 1H6S1 1BXWA 3LK2A 3SYSA 4RLCA 6PRNA 3O0EA 4G75A 3PQUA 2XE1A 3VZUX 4XNLA 5GV0A 1QJ8A 1ZHXA 4GF4A 4KRAA 3QRCA 3VZWX 3UPGA 5AFUL 1ZHYA 4O3ZA 4PUXA 2QTKA 4G76A 5AFUK 2XE3A 2FGQX 1MPFA 3VY8X 4RJWA 3LK42 1ZHZA 1HXXA 2Y2XA 3AAAA 3AAEB 2Y0KA 5IYUA 3AA1B 1QJPA 3DA4A 4GCSA 4AKRA 2XE2A 2W80C 3HWBA 1BT9A 3T20A 3AA6B 3KVDD 5FVNA 2O4VA 4O3YA 2XMXA 5D5DA 2K0LA 3WI4A 2FGRA 4AYEC 4FMSA 3V8UA 5JDPA 2MHLA 1MM5A 4N58A 4D5UA 4O3XB 2Y0HA 1E54A 2LFUA 3UAQA 2X27X 3UU2A 1Q9GA 2XG6A 4GCQA 2YPVA 1HXUA 1YS5A 4XNKA 3DA3A 2PRNA 4JFBA 5DL7A 4FOZA 4D65A 2LHFA 3T0SA 2N2LA 4B61A 2J4UP 5EE2A 2KDYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GF4 A; 
#chains in the Genus database with same CATH topology
 2M07 A;  2R4N A;  3C5O A;  3LK4 1;  3POU A;  4FZM A;  4JCH A;  4K3C A;  1THQ A;  4O4U A;  3NSG A;  2R8A A;  4FES A;  2Y0L A;  1OPF A;  2J1N A;  4AUI A;  3PRN A;  3PF1 A;  3POQ A;  3SY7 A;  2F1C X;  3PQS A;  8PRN A;  4UB8 O;  4AKR B;  5DL5 A;  2XE5 A;  2MNH A;  3VE1 A;  2F1T A;  3BRY A;  3AAE A;  4AYM C;  1ZHT A;  3JCU O;  2YNK A;  1GFP A;  3BS0 A;  4RL9 A;  3WU2 O;  2ERV A;  3SYB A;  3NJT A;  2GE4 A;  4O4X A;  3G7G A;  3LK3 B;  5GTH O;  3JTY A;  3SZV A;  2JMM A;  1QJ9 A;  4D64 A;  3EMN X;  3AAA B;  4LSF A;  2ODJ A;  4C69 X;  5KAI O;  1PRN A;  1PHO A;  4AYN A;  3POR A;  4FUV A;  4O49 A;  4AYD C;  7PRN A;  2X9K A;  3T24 A;  2POR A;  2F1V A;  4FT6 A;  4N75 A;  4C00 A;  2JQY A;  5ADX L;  4AZL A;  2KC0 A;  3LK3 A;  3A2S X;  2W81 C;  4GCP A;  3AA0 A;  2XTQ A;  1S5L O;  3HOL A;  1ZHW A;  3RBH A;  1GFN A;  2XTR A;  3SY9 A;  4E1S A;  2R88 A;  1GFQ A;  2KXP A;  3LK2 B;  5ADX K;  4LSE A;  4Z3T A;  5G26 A;  1ORM A;  3WI5 A;  3K19 A;  5H2F O;  2M06 A;  1IZN A;  2ZLD A;  1G90 A;  2WJR A;  5DL8 A;  4BUM X;  2WJQ A;  3AA7 B;  2KZ7 B;  4FRT A;  1Q9F A;  4FZN A;  4FZL A;  3DWN A;  1P4T A;  3POX A;  4KR4 A;  4FQE A;  5B66 O;  2IWW A;  3AA6 A;  1IZN B;  3GP6 A;  4N59 A;  1MM4 A;  4FRX A;  4RJX A;  2R4P A;  4RLB A;  4AKM A;  4AFK A;  3A0B O;  1GFM A;  5B5E O;  4FSP A;  3HW9 A;  2N2M A;  3VY9 X;  1BH3 A;  1OSM A;  3PGU A;  4GHB A;  4IL6 O;  3HOE A;  4O3W A;  1GFO A;  1HXT A;  4PR7 A;  4LSH A;  5T5F A;  2KZ7 A;  3VE2 A;  3AA7 A;  4E1T A;  2OMF A;  1T16 A;  2K4T A;  4U9C A;  4CTD A;  2WVP A;  2R89 A;  3AA0 B;  2Y7S A;  2R4O A;  3SZD A;  3VZT X;  5PRN A;  3FYX A;  3QRA A;  4QQ1 A;  5DL6 A;  4F4B A;  5G38 A;  3TZG A;  4AYI D;  4LSI A;  3PGS A;  4FSO A;  4KR8 A;  2ZFG A;  2KXP B;  3AA1 A;  1H6S 1;  1BXW A;  3LK2 A;  3SYS A;  4RLC A;  3KZI O;  6PRN A;  3O0E A;  4G75 A;  3PQU A;  2XE1 A;  3VZU X;  4XNL A;  4C4V A;  5GV0 A;  2AXT O;  1QJ8 A;  5E79 O;  1ZHX A;  4GF4 A;  4KRA A;  3QRC A;  3VZW X;  3UPG A;  5AFU L;  1ZHY A;  4O3Z A;  4PUX A;  2QTK A;  4G76 A;  5AFU K;  2XE3 A;  4N74 A;  2FGQ X;  4C4V B;  3BRZ A;  1MPF A;  5GTI O;  3VY8 X;  4RJW A;  3LK4 2;  1ZHZ A;  1HXX A;  2Y2X A;  3AAA A;  3AAE B;  2Y0K A;  5IYU A;  3AA1 B;  4UB6 O;  1QJP A;  3DA4 A;  2KDY A;  4GCS A;  4AKR A;  2XE2 A;  5G3A A;  4PJ0 O;  2W80 C;  3HWB A;  1BT9 A;  3PGR A;  3DZM A;  2IWV A;  4K3B A;  3AA6 B;  5KAF O;  3T20 A;  3KVD D;  5FVN A;  2O4V A;  4O3Y A;  2XMX A;  5D5D A;  2K0L A;  5TIS O;  2FGR A;  3WI4 A;  4AYE C;  4FMS A;  1T1L A;  3V8U A;  5JDP A;  2MHL A;  1MM5 A;  4N58 A;  4D5U A;  4O3X B;  2Y0H A;  5G39 A;  1E54 A;  2LFU A;  3UAQ A;  2X27 X;  3UU2 A;  1Q9G A;  2XG6 A;  4GCQ A;  2YPV A;  1HXU A;  1YS5 A;  4XNK A;  3DA3 A;  2PRN A;  4JFB A;  5DL7 A;  4FOZ A;  4D65 A;  2LHF A;  3T0S A;  2N2L A;  3A0H O;  3DWO X;  4B61 A;  2J4U P;  5EE2 A;  2R4L A; 
#chains in the Genus database with same CATH homology
 2M07 A;  3LK4 1;  3C5O A;  3POU A;  4JCH A;  4FZM A;  1THQ A;  4O4U A;  3NSG A;  4FES A;  2Y0L A;  1OPF A;  2J1N A;  4AUI A;  3PRN A;  3POQ A;  3SY7 A;  3PQS A;  8PRN A;  4AKR B;  5DL5 A;  2XE5 A;  2MNH A;  3VE1 A;  2F1T A;  3AAE A;  4AYM C;  1ZHT A;  2YNK A;  1GFP A;  4RL9 A;  2ERV A;  3SYB A;  2GE4 A;  4O4X A;  3G7G A;  3LK3 B;  3JTY A;  3SZV A;  2JMM A;  1QJ9 A;  4D64 A;  3EMN X;  3AAA B;  4LSF A;  2ODJ A;  4C69 X;  1PRN A;  1PHO A;  4AYN A;  3POR A;  4FUV A;  4O49 A;  4AYD C;  7PRN A;  3T24 A;  2POR A;  2F1V A;  4FT6 A;  5ADX L;  4AZL A;  2KC0 A;  3LK3 A;  3A2S X;  2W81 C;  4GCP A;  3AA0 A;  2XTQ A;  3HOL A;  3SY9 A;  1ZHW A;  3RBH A;  1GFN A;  2XTR A;  4E1S A;  1GFQ A;  2KXP A;  3LK2 B;  5ADX K;  4LSE A;  4Z3T A;  5G26 A;  1ORM A;  3WI5 A;  3K19 A;  2M06 A;  1IZN A;  2ZLD A;  1G90 A;  5DL8 A;  4BUM X;  3AA7 B;  2KZ7 B;  4FRT A;  1Q9F A;  4FZN A;  4FZL A;  1P4T A;  3POX A;  4KR4 A;  3AA6 A;  1IZN B;  3GP6 A;  4N59 A;  1MM4 A;  4FRX A;  4RJX A;  4AKM A;  4RLB A;  4AFK A;  1GFM A;  4FSP A;  3HW9 A;  2N2M A;  3VY9 X;  1BH3 A;  1OSM A;  4GHB A;  4O3W A;  3HOE A;  1GFO A;  1HXT A;  5T5F A;  4LSH A;  3VE2 A;  2KZ7 A;  3AA7 A;  4E1T A;  2OMF A;  2K4T A;  4U9C A;  3AA0 B;  3VZT X;  2Y7S A;  3SZD A;  5PRN A;  3FYX A;  3QRA A;  4QQ1 A;  5DL6 A;  4F4B A;  3TZG A;  4AYI D;  4LSI A;  4FSO A;  4KR8 A;  2ZFG A;  2KXP B;  3AA1 A;  1H6S 1;  1BXW A;  3LK2 A;  3SYS A;  4RLC A;  6PRN A;  3O0E A;  4G75 A;  3PQU A;  2XE1 A;  3VZU X;  4XNL A;  5GV0 A;  1QJ8 A;  1ZHX A;  4GF4 A;  4KRA A;  3QRC A;  3VZW X;  3UPG A;  5AFU L;  1ZHY A;  4O3Z A;  4PUX A;  2QTK A;  4G76 A;  5AFU K;  2XE3 A;  2FGQ X;  1MPF A;  3VY8 X;  4RJW A;  3LK4 2;  1ZHZ A;  1HXX A;  2Y2X A;  3AAA A;  3AAE B;  2Y0K A;  5IYU A;  3AA1 B;  1QJP A;  3DA4 A;  4GCS A;  4AKR A;  2XE2 A;  2W80 C;  3HWB A;  1BT9 A;  3T20 A;  3AA6 B;  3KVD D;  5FVN A;  2O4V A;  4O3Y A;  2XMX A;  5D5D A;  2K0L A;  3WI4 A;  2FGR A;  4AYE C;  4FMS A;  3V8U A;  5JDP A;  2MHL A;  1MM5 A;  4N58 A;  4D5U A;  4O3X B;  2Y0H A;  1E54 A;  2LFU A;  3UAQ A;  2X27 X;  3UU2 A;  1Q9G A;  2XG6 A;  4GCQ A;  2YPV A;  1HXU A;  1YS5 A;  4XNK A;  3DA3 A;  2PRN A;  4JFB A;  5DL7 A;  4FOZ A;  4D65 A;  2LHF A;  3T0S A;  2N2L A;  4B61 A;  2J4U P;  5EE2 A;  2KDY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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