4GF4A

Low ph structure of pseudomonas putida oprb
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
418
structure length
299
Chain Sequence
FSSESKWMTGDWGGTRTELLDKGYDFTLDYVGEVAGNLDDKTARYSDQFALGAHLDLQKILGWHDAEFKLAITERSGRNLSNDRFSSVQEVWGRGQTWRLTQMWIKQKYFDGALDVKFGRFGEGEDFNSNWPVSQWALRVKYNITPAFFVQVGAFEQTKGAIMPMEAVWSPKVNGLPGEYRLGYYYSTSKHGWWVVAQQQVTAHGGDVNRGLSLFANFTVHDKVDNYQQVGLVYKGAFDARPKDDIGFGVARIHVNQRTEYNAELYYGFHVTNWLTVRPNLQYIKSNALVAGMKMQSSF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Porin B
publication title Structural basis for outer membrane sugar uptake in pseudomonads.
pubmed doi rcsb
source organism Pseudomonas putida
total genus 75
structure length 299
sequence length 418
ec nomenclature
pdb deposition date 2012-08-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04966 OprB Carbohydrate-selective porin, OprB family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.180 Mainly Beta Beta Barrel Porin Porin 4gf4A00
4GF4A
chains in the Genus database with same CATH superfamily
2QTKA 3V8UA 2KZ7A 3T0SA 3SY9A 4AYDC 7PRNA 5JDPA 3GP6A 4FUVA 3PGSA 2YPVA 3UAQA 4AYID 2XMXA 2KC0A 4RJWA 4AYMC 4AZLA 5D5DA 5TISO 5KAFO 2IWVA 2R88A 3RBHA 1GFQA 2KDYA 5EE2A 3LK2B 3NJTA 3SYBA 4AYEC 3G7GA 2N2MA 3O0EA 3C5OA 5T5FA 3POUA 2M06A 1MM5A 4AFKA 4FZNA 4RLCA 1PRNA 2K0LA 2K4TA 1Q9GA 2R4PA 1MM4A 2X27X 3SYSA 5AFUK 1IZNB 2YNKA 3VZWX 1HXUA 4FRXA 4O3XB 2R4OA 4GCSA 4FOZA 2KXPA 6PRNA 3QRCA 2W80C 2N2LA 5AFUL 3VY8X 2KZ7B 2WVPA 3AA1B 3LK42 4KR8A 4FESA 4N74A 2F1TA 2R89A 3LK41 4O3YA 1ZHZA 3AA1A 4D64A 2J4UP 3VZUX 2GE4A 3WU2O 4RL9A 1GFOA 1T16A 5GTIO 2WJQA 4LSFA 2PRNA 4G75A 4O4UA 3POXA 4F4BA 1GFNA 5KAIO 5B66O 5ADXK 1QJ8A 4LSIA 4O3WA 4CTDA 4UB6O 2R8AA 2XE2A 2ODJA 4IL6O 3SZVA 4D65A 2R4NA 4KRAA 4FT6A 1P4TA 3NSGA 1HXTA 4N58A 3HW9A 2KXPB 4RLBA 4XNKA 3AA6A 1PHOA 4K3CA 4C69X 5ADXL 4GHBA 1G90A 2XG6A 3AA7B 4G76A 3BRYA 2R4LA 2X9KA 3TZGA 4AKRB 2J1NA 1Q9FA 2JQYA 4FSOA 2AXTO 3KVDD 3KZIO 4XNLA 3BS0A 2PORA 3AA7A 4AKMA 3UPGA 3AA0B 2WJRA 3DWNA 4AKRA 3PGUA 3PQUA 3WI4A 4FZMA 4UB8O 4FZLA 4N59A 4PJ0O 4C00A 3LK3B 3AAAA 4O49A 2ZLDA 4FSPA 3DZMA 1S5LO 2W81C 3AA0A 2OMFA 2Y0HA 3POQA 4GCPA 4O4XA 4PUXA 4AUIA 3A2SX 3T20A 3LK3A 3JTYA 3DA3A 1ZHWA 3QRAA 2JMMA 4LSHA 4LSEA 5DL5A 4Z3TA 2IWWA 4QQ1A 3PF1A 8PRNA 3AA6B 2XE5A 3BRZA 1THQA 2M07A 2XE1A 1QJPA 2MHLA 3UU2A 1GFMA 5G38A 3PGRA 1OPFA 1BT9A 5DL6A 2FGRA 3PQSA 5E79O 2F1CX 4FQEA 3AAEB 4BUMX 2LHFA 2ZFGA 3A0BO 3DA4A 1ORMA 1T1LA 2Y0KA 2ERVA 2Y7SA 3K19A 4GF4A 5G3AA 3HOLA 4B61A 5IYUA 4RJXA 1HXXA 3AAEA 1E54A 3AAAB 2XTQA 3HOEA 4O3ZA 2Y2XA 2Y0LA 4C4VB 3JCUO 4KR4A 3SY7A 1BH3A 5DL8A 3SZDA 1OSMA 2LFUA 4E1TA 1GFPA 4C4VA 1MPFA 5FVNA 5H2FO 5GTHO 2XTRA 3DWOX 1ZHYA 1BXWA 4GCQA 5PRNA 3EMNX 4JFBA 5B5EO 3LK2A 3VE2A 4PR7A 2FGQX 5DL7A 1H6S1 2MNHA 4JCHA 4K3BA 3T24A 2O4VA 5G39A 3A0HO 3PRNA 4FMSA 2F1VA 1YS5A 5G26A 4D5UA 1IZNA 2XE3A 3VE1A 3FYXA 4N75A 3WI5A 3VY9X 5GV0A 4FRTA 3HWBA 4U9CA 3VZTX 1QJ9A 4E1SA 3PORA 1ZHTA 1ZHXA 4AYNA
chains in the Genus database with same CATH topology
2QTKA 3V8UA 2KZ7A 3T0SA 3SY9A 4AYDC 7PRNA 5JDPA 3GP6A 4FUVA 2YPVA 3UAQA 4AYID 2XMXA 2KC0A 4RJWA 4AYMC 4AZLA 5D5DA 3RBHA 1GFQA 2KDYA 5EE2A 3LK2B 3SYBA 4AYEC 3G7GA 2N2MA 3O0EA 3C5OA 5T5FA 3POUA 2M06A 1MM5A 4AFKA 4FZNA 4RLCA 1PRNA 2K0LA 2K4TA 1Q9GA 1MM4A 2X27X 3SYSA 5AFUK 1IZNB 2YNKA 3VZWX 1HXUA 4FRXA 4O3XB 4GCSA 4FOZA 2KXPA 6PRNA 3QRCA 2W80C 2N2LA 5AFUL 3VY8X 2KZ7B 3AA1B 3LK42 4KR8A 4FESA 2F1TA 3LK41 4O3YA 1ZHZA 3AA1A 4D64A 2J4UP 3VZUX 2GE4A 4RL9A 1GFOA 4LSFA 2PRNA 4G75A 4O4UA 3POXA 4F4BA 1GFNA 5ADXK 1QJ8A 4LSIA 4O3WA 2XE2A 2ODJA 3SZVA 4D65A 4KRAA 4FT6A 1P4TA 3NSGA 1HXTA 4N58A 3HW9A 2KXPB 4RLBA 4XNKA 3AA6A 1PHOA 4C69X 5ADXL 4GHBA 1G90A 2XG6A 3AA7B 4G76A 3TZGA 4AKRB 2J1NA 1Q9FA 4FSOA 3KVDD 4XNLA 4AKMA 3UPGA 2PORA 3AA7A 3AA0B 4AKRA 3PQUA 3WI4A 4FZMA 5GV0A 4FZLA 4N59A 3LK3B 3AAAA 4O49A 2ZLDA 4FSPA 4GCPA 4AUIA 2W81C 3AA0A 2OMFA 2Y0HA 3POQA 4O4XA 4PUXA 3A2SX 3T20A 3LK3A 3JTYA 3DA3A 1ZHWA 3QRAA 2JMMA 4LSHA 4LSEA 5DL5A 4Z3TA 4QQ1A 8PRNA 3AA6B 2XE5A 1THQA 2M07A 2XE1A 1QJPA 2MHLA 3UU2A 1GFMA 1OPFA 1BT9A 5DL6A 2FGRA 3PQSA 3AAEB 4BUMX 2LHFA 2ZFGA 3DA4A 1ORMA 2Y0KA 3K19A 2ERVA 2Y7SA 4GF4A 4B61A 5IYUA 3HOLA 4RJXA 1HXXA 3AAEA 1E54A 3AAAB 2XTQA 3HOEA 4O3ZA 2Y2XA 2Y0LA 4KR4A 3SY7A 1BH3A 5DL8A 3SZDA 1OSMA 2LFUA 4E1TA 1GFPA 1MPFA 5FVNA 2XTRA 1ZHYA 1BXWA 4GCQA 5PRNA 3EMNX 4JFBA 3LK2A 3VE2A 2FGQX 5DL7A 1H6S1 2MNHA 4JCHA 3T24A 2O4VA 3PRNA 4FMSA 2F1VA 1YS5A 5G26A 4D5UA 1IZNA 2XE3A 3VE1A 3FYXA 3WI5A 3VY9X 4FRTA 3HWBA 4U9CA 3VZTX 1QJ9A 4E1SA 3PORA 1ZHTA 1ZHXA 4AYNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GF4 A; 
#chains in the Genus database with same CATH topology
 2QTK A;  3V8U A;  2KZ7 A;  3T0S A;  3SY9 A;  4AYD C;  7PRN A;  5JDP A;  3GP6 A;  4FUV A;  3PGS A;  2YPV A;  3UAQ A;  4AYI D;  2XMX A;  2KC0 A;  4RJW A;  4AYM C;  4AZL A;  5D5D A;  5TIS O;  5KAF O;  2IWV A;  2R88 A;  3RBH A;  1GFQ A;  2KDY A;  5EE2 A;  3LK2 B;  3NJT A;  3SYB A;  4AYE C;  3G7G A;  2N2M A;  3O0E A;  3C5O A;  5T5F A;  3POU A;  2M06 A;  1MM5 A;  4AFK A;  4FZN A;  4RLC A;  1PRN A;  2K0L A;  2K4T A;  1Q9G A;  2R4P A;  1MM4 A;  2X27 X;  3SYS A;  5AFU K;  1IZN B;  2YNK A;  3VZW X;  1HXU A;  4FRX A;  4O3X B;  2R4O A;  4GCS A;  4FOZ A;  2KXP A;  6PRN A;  3QRC A;  2W80 C;  2N2L A;  5AFU L;  3VY8 X;  2KZ7 B;  2WVP A;  3AA1 B;  3LK4 2;  4KR8 A;  4FES A;  4N74 A;  2F1T A;  2R89 A;  3LK4 1;  4O3Y A;  1ZHZ A;  3AA1 A;  4D64 A;  2J4U P;  3VZU X;  2GE4 A;  3WU2 O;  4RL9 A;  1GFO A;  1T16 A;  5GTI O;  2WJQ A;  4LSF A;  2PRN A;  4G75 A;  4O4U A;  3POX A;  4F4B A;  1GFN A;  5KAI O;  5B66 O;  5ADX K;  1QJ8 A;  4LSI A;  4O3W A;  4CTD A;  4UB6 O;  2R8A A;  2XE2 A;  2ODJ A;  4IL6 O;  3SZV A;  4D65 A;  2R4N A;  4KRA A;  4FT6 A;  1P4T A;  3NSG A;  1HXT A;  4N58 A;  3HW9 A;  2KXP B;  4RLB A;  4XNK A;  3AA6 A;  1PHO A;  4K3C A;  4C69 X;  5ADX L;  4GHB A;  1G90 A;  2XG6 A;  3AA7 B;  4G76 A;  3BRY A;  2R4L A;  2X9K A;  3TZG A;  4AKR B;  2J1N A;  1Q9F A;  2JQY A;  4FSO A;  2AXT O;  3KVD D;  3KZI O;  4XNL A;  3BS0 A;  2POR A;  3AA7 A;  4AKM A;  3UPG A;  3AA0 B;  2WJR A;  3DWN A;  4AKR A;  3PGU A;  3PQU A;  3WI4 A;  4FZM A;  4UB8 O;  4FZL A;  4N59 A;  4PJ0 O;  4C00 A;  3LK3 B;  3AAA A;  4O49 A;  2ZLD A;  4FSP A;  3DZM A;  1S5L O;  2W81 C;  3AA0 A;  2OMF A;  2Y0H A;  3POQ A;  4GCP A;  4O4X A;  4PUX A;  4AUI A;  3A2S X;  3T20 A;  3LK3 A;  3JTY A;  3DA3 A;  1ZHW A;  3QRA A;  2JMM A;  4LSH A;  4LSE A;  5DL5 A;  4Z3T A;  2IWW A;  4QQ1 A;  3PF1 A;  8PRN A;  3AA6 B;  2XE5 A;  3BRZ A;  1THQ A;  2M07 A;  2XE1 A;  1QJP A;  2MHL A;  3UU2 A;  1GFM A;  5G38 A;  3PGR A;  1OPF A;  1BT9 A;  5DL6 A;  2FGR A;  3PQS A;  5E79 O;  2F1C X;  4FQE A;  3AAE B;  4BUM X;  2LHF A;  2ZFG A;  3A0B O;  3DA4 A;  1ORM A;  1T1L A;  2Y0K A;  2ERV A;  2Y7S A;  3K19 A;  4GF4 A;  5G3A A;  3HOL A;  4B61 A;  5IYU A;  4RJX A;  1HXX A;  3AAE A;  1E54 A;  3AAA B;  2XTQ A;  3HOE A;  4O3Z A;  2Y2X A;  2Y0L A;  4C4V B;  3JCU O;  4KR4 A;  3SY7 A;  1BH3 A;  5DL8 A;  3SZD A;  1OSM A;  2LFU A;  4E1T A;  1GFP A;  4C4V A;  1MPF A;  5FVN A;  5H2F O;  5GTH O;  2XTR A;  3DWO X;  1ZHY A;  1BXW A;  4GCQ A;  5PRN A;  3EMN X;  4JFB A;  5B5E O;  3LK2 A;  3VE2 A;  4PR7 A;  2FGQ X;  5DL7 A;  1H6S 1;  2MNH A;  4JCH A;  4K3B A;  3T24 A;  2O4V A;  5G39 A;  3A0H O;  3PRN A;  4FMS A;  2F1V A;  1YS5 A;  5G26 A;  4D5U A;  1IZN A;  2XE3 A;  3VE1 A;  3FYX A;  4N75 A;  3WI5 A;  3VY9 X;  5GV0 A;  4FRT A;  3HWB A;  4U9C A;  3VZT X;  1QJ9 A;  4E1S A;  3POR A;  1ZHT A;  1ZHX A;  4AYN A; 
#chains in the Genus database with same CATH homology
 2QTK A;  3V8U A;  2KZ7 A;  3T0S A;  3SY9 A;  4AYD C;  7PRN A;  5JDP A;  3GP6 A;  4FUV A;  2YPV A;  3UAQ A;  4AYI D;  2XMX A;  2KC0 A;  4RJW A;  4AYM C;  4AZL A;  5D5D A;  3RBH A;  1GFQ A;  2KDY A;  5EE2 A;  3LK2 B;  3SYB A;  4AYE C;  3G7G A;  2N2M A;  3O0E A;  3C5O A;  5T5F A;  3POU A;  2M06 A;  1MM5 A;  4AFK A;  4FZN A;  4RLC A;  1PRN A;  2K0L A;  2K4T A;  1Q9G A;  1MM4 A;  2X27 X;  3SYS A;  5AFU K;  1IZN B;  2YNK A;  3VZW X;  1HXU A;  4FRX A;  4O3X B;  4GCS A;  4FOZ A;  2KXP A;  6PRN A;  3QRC A;  2W80 C;  2N2L A;  5AFU L;  3VY8 X;  2KZ7 B;  3AA1 B;  3LK4 2;  4KR8 A;  4FES A;  2F1T A;  3LK4 1;  4O3Y A;  1ZHZ A;  3AA1 A;  4D64 A;  2J4U P;  3VZU X;  2GE4 A;  4RL9 A;  1GFO A;  4LSF A;  2PRN A;  4G75 A;  4O4U A;  3POX A;  4F4B A;  1GFN A;  5ADX K;  1QJ8 A;  4LSI A;  4O3W A;  2XE2 A;  2ODJ A;  3SZV A;  4D65 A;  4KRA A;  4FT6 A;  1P4T A;  3NSG A;  1HXT A;  4N58 A;  3HW9 A;  2KXP B;  4RLB A;  4XNK A;  3AA6 A;  1PHO A;  4C69 X;  5ADX L;  4GHB A;  1G90 A;  2XG6 A;  3AA7 B;  4G76 A;  3TZG A;  4AKR B;  2J1N A;  1Q9F A;  4FSO A;  3KVD D;  4XNL A;  4AKM A;  3UPG A;  2POR A;  3AA7 A;  3AA0 B;  4AKR A;  3PQU A;  3WI4 A;  4FZM A;  5GV0 A;  4FZL A;  4N59 A;  3LK3 B;  3AAA A;  4O49 A;  2ZLD A;  4FSP A;  4GCP A;  4AUI A;  2W81 C;  3AA0 A;  2OMF A;  2Y0H A;  3POQ A;  4O4X A;  4PUX A;  3A2S X;  3T20 A;  3LK3 A;  3JTY A;  3DA3 A;  1ZHW A;  3QRA A;  2JMM A;  4LSH A;  4LSE A;  5DL5 A;  4Z3T A;  4QQ1 A;  8PRN A;  3AA6 B;  2XE5 A;  1THQ A;  2M07 A;  2XE1 A;  1QJP A;  2MHL A;  3UU2 A;  1GFM A;  1OPF A;  1BT9 A;  5DL6 A;  2FGR A;  3PQS A;  3AAE B;  4BUM X;  2LHF A;  2ZFG A;  3DA4 A;  1ORM A;  2Y0K A;  3K19 A;  2ERV A;  2Y7S A;  4GF4 A;  4B61 A;  5IYU A;  3HOL A;  4RJX A;  1HXX A;  3AAE A;  1E54 A;  3AAA B;  2XTQ A;  3HOE A;  4O3Z A;  2Y2X A;  2Y0L A;  4KR4 A;  3SY7 A;  1BH3 A;  5DL8 A;  3SZD A;  1OSM A;  2LFU A;  4E1T A;  1GFP A;  1MPF A;  5FVN A;  2XTR A;  1ZHY A;  1BXW A;  4GCQ A;  5PRN A;  3EMN X;  4JFB A;  3LK2 A;  3VE2 A;  2FGQ X;  5DL7 A;  1H6S 1;  2MNH A;  4JCH A;  3T24 A;  2O4V A;  3PRN A;  4FMS A;  2F1V A;  1YS5 A;  5G26 A;  4D5U A;  1IZN A;  2XE3 A;  3VE1 A;  3FYX A;  3WI5 A;  3VY9 X;  4FRT A;  3HWB A;  4U9C A;  3VZT X;  1QJ9 A;  4E1S A;  3POR A;  1ZHT A;  1ZHX A;  4AYN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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