4GF4A

Low ph structure of pseudomonas putida oprb
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
418
structure length
299
Chain Sequence
b'FSSESKWMTGDWGGTRTELLDKGYDFTLDYVGEVAGNLDDKTARYSDQFALGAHLDLQKILGWHDAEFKLAITERSGRNLSNDRFSSVQEVWGRGQTWRLTQMWIKQKYFDGALDVKFGRFGEGEDFNSNWPVSQWALRVKYNITPAFFVQVGAFEQTKGAIMPMEAVWSPKVNGLPGEYRLGYYYSTSKHGWWVVAQQQVTAHGGDVNRGLSLFANFTVHDKVDNYQQVGLVYKGAFDARPKDDIGFGVARIHVNQRTEYNAELYYGFHVTNWLTVRPNLQYIKSNALVAGMKMQSSF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Porin B
publication title Structural basis for outer membrane sugar uptake in pseudomonads.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Transport protein
total genus 75
structure length 299
sequence length 418
ec nomenclature
pdb deposition date 2012-08-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04966 OprB Carbohydrate-selective porin, OprB family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.180 Mainly Beta Beta Barrel Porin Porin 4gf4A00
4GF4A
chains in the Genus database with same CATH superfamily
3VY9X 4LSEA 3DZMA 2FGRA 2YNKA 3JTYA 4JCHA 4LSFA 2ERVA 4KR4A 1IZNA 4AKMA 3BRYA 3AA1A 3C5OA 2XG6A 5GTIO 3SYSA 3DA4A 2XE5A 2KZ7B 2J1NA 4G76A 4LSHA 4AYNA 4O4UA 4FSPA 1HXUA 2R4LA 2IWWA 6PRNA 3VZUX 2YPVA 4D64A 8PRNA 2Y0LA 4AKRB 3AA6A 3KVDD 4AYMC 3PGRA 4RLBA 5JDPA 4O3YA 2JMMA 3AAEB 3T24A 7PRNA 4FRTA 3KZIO 3V8UA 2F1VA 2M06A 3AA0B 3WI4A 2IWVA 2K0LA 2MHLA 2Y2XA 3LK42 4E1SA 2PORA 2KDYA 2X27X 3AAAB 4K3CA 4K3BA 4N58A 4C4VA 2KC0A 3LK2A 3PQUA 1BT9A 1H6S1 5G39A 4FOZA 1ZHYA 4XNKA 4RL9A 4AFKA 1OPFA 2R4NA 3LK3B 3VY8X 5H2FO 4O49A 4C69X 2ZLDA 2LHFA 1Q9GA 3DA3A 4E1TA 1T1LA 4BUMX 1HXXA 4F4BA 5AFUK 4Z3TA 3SY9A 1IZNB 5FVNA 4PJ0O 4AYDC 2R8AA 5DL7A 3UU2A 2WVPA 3SYBA 4C00A 2JQYA 3VE1A 4FSOA 4RJWA 4O3WA 1THQA 3G7GA 2XMXA 5KAIO 4FZMA 3A0HO 3GP6A 3AA6B 4GCQA 4PR7A 3VZWX 3UAQA 2XE3A 3POQA 2WJQA 4FZLA 2N2LA 2ZFGA 5G3AA 5ADXK 4B61A 1ZHZA 5ADXL 3K19A 2R4OA 2XTRA 5B66O 5G26A 4FESA 5PRNA 4KRAA 4UB6O 3HOEA 4GHBA 4JFBA 1S5LO 4C4VB 3LK41 3PGSA 3PRNA 4XNLA 5T5FA 5TISO 2XTQA 4LSIA 2XE2A 2X9KA 1PHOA 4AYID 1MPFA 1Q9FA 3POUA 2F1TA 4N75A 4QQ1A 4FT6A 5GTHO 1G90A 1OSMA 4CTDA 4PUXA 5AFUL 1MM5A 3DWOX 1HXTA 3NSGA 3QRAA 3AA1B 3WI5A 2LFUA 4O3XB 2KXPA 3EMNX 1YS5A 3PGUA 1E54A 4IL6O 4FRXA 4AZLA 3AA7A 5GV0A 1GFPA 5D5DA 5EE2A 3PORA 3HOLA 4FMSA 5DL8A 2GE4A 2K4TA 3O0EA 4GF4A 3POXA 4FZNA 5DL6A 3VZTX 1ORMA 1ZHWA 4UB8O 2W81C 5IYUA 3FYXA 4AUIA 3T20A 2ODJA 4O3ZA 1GFOA 2Y0KA 1QJ9A 2XE1A 4FQEA 1PRNA 3A0BO 5DL5A 3T0SA 4U9CA 2M07A 3BRZA 3RBHA 4N74A 4KR8A 3LK2B 3A2SX 3WU2O 4D65A 2J4UP 2KZ7A 2W80C 2N2MA 4GCSA 4O4XA 4RLCA 3SZVA 3SZDA 4D5UA 1GFQA 3BS0A 2F1CX 2R88A 4AKRA 2Y0HA 3UPGA 2WJRA 2PRNA 4G75A 3VE2A 2QTKA 3HWBA 4FUVA 1BH3A 3NJTA 4RJXA 2Y7SA 3AAEA 4GCPA 2KXPB 4AYEC 2OMFA 3HW9A 1ZHXA 3SY7A 3AA7B 3DWNA 1ZHTA 3AA0A 1GFNA 1QJ8A 3QRCA 1MM4A 5B5EO 1GFMA 3JCUO 3PQSA 3PF1A 4N59A 2O4VA 3AAAA 5G38A 2MNHA 2AXTO 3TZGA 1T16A 2R4PA 1P4TA 5E79O 2R89A 5KAFO 1BXWA 1QJPA 3LK3A 2FGQX
chains in the Genus database with same CATH topology
3VY9X 4LSEA 2FGRA 2YNKA 3JTYA 4JCHA 4LSFA 2ERVA 4KR4A 1IZNA 4AKMA 3AA1A 3C5OA 2XG6A 3SYSA 3DA4A 2XE5A 2KZ7B 2J1NA 4G76A 4LSHA 4AYNA 4O4UA 4FSPA 1HXUA 6PRNA 3VZUX 2YPVA 4D64A 8PRNA 2Y0LA 4AKRB 3AA6A 3KVDD 4AYMC 4RLBA 5JDPA 4O3YA 2JMMA 3AAEB 3T24A 7PRNA 4FRTA 3V8UA 2F1VA 2M06A 3AA0B 3WI4A 2K0LA 2MHLA 2Y2XA 3LK42 4E1SA 2PORA 2KDYA 2X27X 3AAAB 4N58A 1G90A 2KC0A 3LK2A 3PQUA 1BT9A 1H6S1 4FOZA 1ZHYA 4XNKA 4RL9A 4AFKA 1OPFA 3VY8X 3LK3B 4O49A 4C69X 2ZLDA 2LHFA 1Q9GA 3DA3A 4E1TA 5AFUK 4BUMX 1HXXA 4F4BA 4Z3TA 3SY9A 1IZNB 5FVNA 4AYDC 5DL7A 3UU2A 3SYBA 3VE1A 4FSOA 4RJWA 4O3WA 1THQA 3G7GA 2XMXA 4FZMA 3GP6A 3VZWX 3AA6B 4GCQA 3UAQA 2XE3A 3POQA 4FZLA 5ADXK 2N2LA 2ZFGA 4B61A 1ZHZA 5ADXL 3K19A 2XTRA 5G26A 4FESA 5PRNA 4KRAA 3HOEA 4GHBA 4JFBA 3LK41 3PRNA 4XNLA 5T5FA 2XTQA 4LSIA 2XE2A 4AYID 1PHOA 1MPFA 1Q9FA 3POUA 2F1TA 4QQ1A 4FT6A 1OSMA 5AFUL 4PUXA 1MM5A 3NSGA 1HXTA 3QRAA 3WI5A 3AA1B 2LFUA 4O3XB 2KXPA 3EMNX 1YS5A 5GV0A 1E54A 4AZLA 4FRXA 3AA7A 1GFPA 5D5DA 5EE2A 3PORA 3HOLA 4FMSA 5DL8A 2GE4A 2K4TA 3O0EA 4GF4A 3POXA 4FZNA 5DL6A 3VZTX 1ORMA 1ZHWA 2W81C 5IYUA 3FYXA 4AUIA 3T20A 2ODJA 4O3ZA 1GFOA 2Y0KA 1QJ9A 2XE1A 5DL5A 1PRNA 3T0SA 4U9CA 2M07A 3RBHA 4D65A 4KR8A 3LK2B 3A2SX 2J4UP 2KZ7A 2W80C 2N2MA 4GCSA 4O4XA 4RLCA 3SZVA 3SZDA 4D5UA 1GFQA 3UPGA 4AKRA 2Y0HA 2PRNA 4G75A 3VE2A 2QTKA 3HWBA 4FUVA 1BH3A 4RJXA 2Y7SA 3AAEA 4GCPA 2KXPB 4AYEC 2OMFA 3HW9A 1ZHXA 3SY7A 3AA7B 1ZHTA 3AA0A 1GFNA 1QJ8A 3QRCA 1MM4A 1GFMA 3PQSA 4N59A 2O4VA 3AAAA 2MNHA 3TZGA 1P4TA 1BXWA 1QJPA 3LK3A 2FGQX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GF4 A; 
#chains in the Genus database with same CATH topology
 3VY9 X;  4LSE A;  3DZM A;  2FGR A;  2YNK A;  3JTY A;  4JCH A;  4LSF A;  2ERV A;  4KR4 A;  1IZN A;  4AKM A;  3BRY A;  3AA1 A;  3C5O A;  2XG6 A;  5GTI O;  3SYS A;  3DA4 A;  2XE5 A;  2KZ7 B;  2J1N A;  4G76 A;  4LSH A;  4AYN A;  4O4U A;  4FSP A;  1HXU A;  2R4L A;  2IWW A;  6PRN A;  3VZU X;  2YPV A;  4D64 A;  8PRN A;  2Y0L A;  4AKR B;  3AA6 A;  3KVD D;  4AYM C;  3PGR A;  4RLB A;  5JDP A;  4O3Y A;  2JMM A;  3AAE B;  3T24 A;  7PRN A;  4FRT A;  3KZI O;  3V8U A;  2F1V A;  2M06 A;  3AA0 B;  3WI4 A;  2IWV A;  2K0L A;  2MHL A;  2Y2X A;  3LK4 2;  4E1S A;  2POR A;  2KDY A;  2X27 X;  3AAA B;  4K3C A;  4K3B A;  4N58 A;  4C4V A;  2KC0 A;  3LK2 A;  3PQU A;  1BT9 A;  1H6S 1;  5G39 A;  4FOZ A;  1ZHY A;  4XNK A;  4RL9 A;  4AFK A;  1OPF A;  2R4N A;  3LK3 B;  3VY8 X;  5H2F O;  4O49 A;  4C69 X;  2ZLD A;  2LHF A;  1Q9G A;  3DA3 A;  4E1T A;  1T1L A;  4BUM X;  1HXX A;  4F4B A;  5AFU K;  4Z3T A;  3SY9 A;  1IZN B;  5FVN A;  4PJ0 O;  4AYD C;  2R8A A;  5DL7 A;  3UU2 A;  2WVP A;  3SYB A;  4C00 A;  2JQY A;  3VE1 A;  4FSO A;  4RJW A;  4O3W A;  1THQ A;  3G7G A;  2XMX A;  5KAI O;  4FZM A;  3A0H O;  3GP6 A;  3AA6 B;  4GCQ A;  4PR7 A;  3VZW X;  3UAQ A;  2XE3 A;  3POQ A;  2WJQ A;  4FZL A;  2N2L A;  2ZFG A;  5G3A A;  5ADX K;  4B61 A;  1ZHZ A;  5ADX L;  3K19 A;  2R4O A;  2XTR A;  5B66 O;  5G26 A;  4FES A;  5PRN A;  4KRA A;  4UB6 O;  3HOE A;  4GHB A;  4JFB A;  1S5L O;  4C4V B;  3LK4 1;  3PGS A;  3PRN A;  4XNL A;  5T5F A;  5TIS O;  2XTQ A;  4LSI A;  2XE2 A;  2X9K A;  1PHO A;  4AYI D;  1MPF A;  1Q9F A;  3POU A;  2F1T A;  4N75 A;  4QQ1 A;  4FT6 A;  5GTH O;  1G90 A;  1OSM A;  4CTD A;  4PUX A;  5AFU L;  1MM5 A;  3DWO X;  1HXT A;  3NSG A;  3QRA A;  3AA1 B;  3WI5 A;  2LFU A;  4O3X B;  2KXP A;  3EMN X;  1YS5 A;  3PGU A;  1E54 A;  4IL6 O;  4FRX A;  4AZL A;  3AA7 A;  5GV0 A;  1GFP A;  5D5D A;  5EE2 A;  3POR A;  3HOL A;  4FMS A;  5DL8 A;  2GE4 A;  2K4T A;  3O0E A;  4GF4 A;  3POX A;  4FZN A;  5DL6 A;  3VZT X;  1ORM A;  1ZHW A;  4UB8 O;  2W81 C;  5IYU A;  3FYX A;  4AUI A;  3T20 A;  2ODJ A;  4O3Z A;  1GFO A;  2Y0K A;  1QJ9 A;  2XE1 A;  4FQE A;  1PRN A;  3A0B O;  5DL5 A;  3T0S A;  4U9C A;  2M07 A;  3BRZ A;  3RBH A;  4N74 A;  4KR8 A;  3LK2 B;  3A2S X;  3WU2 O;  4D65 A;  2J4U P;  2KZ7 A;  2W80 C;  2N2M A;  4GCS A;  4O4X A;  4RLC A;  3SZV A;  3SZD A;  4D5U A;  1GFQ A;  3BS0 A;  2F1C X;  2R88 A;  4AKR A;  2Y0H A;  3UPG A;  2WJR A;  2PRN A;  4G75 A;  3VE2 A;  2QTK A;  3HWB A;  4FUV A;  1BH3 A;  3NJT A;  4RJX A;  2Y7S A;  3AAE A;  4GCP A;  2KXP B;  4AYE C;  2OMF A;  3HW9 A;  1ZHX A;  3SY7 A;  3AA7 B;  3DWN A;  1ZHT A;  3AA0 A;  1GFN A;  1QJ8 A;  3QRC A;  1MM4 A;  5B5E O;  1GFM A;  3JCU O;  3PQS A;  3PF1 A;  4N59 A;  2O4V A;  3AAA A;  5G38 A;  2MNH A;  2AXT O;  3TZG A;  1T16 A;  2R4P A;  1P4T A;  5E79 O;  2R89 A;  5KAF O;  1BXW A;  1QJP A;  3LK3 A;  2FGQ X; 
#chains in the Genus database with same CATH homology
 3VY9 X;  4LSE A;  2FGR A;  2YNK A;  3JTY A;  4JCH A;  4LSF A;  2ERV A;  4KR4 A;  1IZN A;  4AKM A;  3AA1 A;  3C5O A;  2XG6 A;  3SYS A;  3DA4 A;  2XE5 A;  2KZ7 B;  2J1N A;  4G76 A;  4LSH A;  4AYN A;  4O4U A;  4FSP A;  1HXU A;  6PRN A;  3VZU X;  2YPV A;  4D64 A;  8PRN A;  2Y0L A;  4AKR B;  3AA6 A;  3KVD D;  4AYM C;  4RLB A;  5JDP A;  4O3Y A;  2JMM A;  3AAE B;  3T24 A;  7PRN A;  4FRT A;  3V8U A;  2F1V A;  2M06 A;  3AA0 B;  3WI4 A;  2K0L A;  2MHL A;  2Y2X A;  3LK4 2;  4E1S A;  2POR A;  2KDY A;  2X27 X;  3AAA B;  4N58 A;  1G90 A;  2KC0 A;  3LK2 A;  3PQU A;  1BT9 A;  1H6S 1;  4FOZ A;  1ZHY A;  4XNK A;  4RL9 A;  4AFK A;  1OPF A;  3VY8 X;  3LK3 B;  4O49 A;  4C69 X;  2ZLD A;  2LHF A;  1Q9G A;  3DA3 A;  4E1T A;  5AFU K;  4BUM X;  1HXX A;  4F4B A;  4Z3T A;  3SY9 A;  1IZN B;  5FVN A;  4AYD C;  5DL7 A;  3UU2 A;  3SYB A;  3VE1 A;  4FSO A;  4RJW A;  4O3W A;  1THQ A;  3G7G A;  2XMX A;  4FZM A;  3GP6 A;  3VZW X;  3AA6 B;  4GCQ A;  3UAQ A;  2XE3 A;  3POQ A;  4FZL A;  5ADX K;  2N2L A;  2ZFG A;  4B61 A;  1ZHZ A;  5ADX L;  3K19 A;  2XTR A;  5G26 A;  4FES A;  5PRN A;  4KRA A;  3HOE A;  4GHB A;  4JFB A;  3LK4 1;  3PRN A;  4XNL A;  5T5F A;  2XTQ A;  4LSI A;  2XE2 A;  4AYI D;  1PHO A;  1MPF A;  1Q9F A;  3POU A;  2F1T A;  4QQ1 A;  4FT6 A;  1OSM A;  5AFU L;  4PUX A;  1MM5 A;  3NSG A;  1HXT A;  3QRA A;  3WI5 A;  3AA1 B;  2LFU A;  4O3X B;  2KXP A;  3EMN X;  1YS5 A;  5GV0 A;  1E54 A;  4AZL A;  4FRX A;  3AA7 A;  1GFP A;  5D5D A;  5EE2 A;  3POR A;  3HOL A;  4FMS A;  5DL8 A;  2GE4 A;  2K4T A;  3O0E A;  4GF4 A;  3POX A;  4FZN A;  5DL6 A;  3VZT X;  1ORM A;  1ZHW A;  2W81 C;  5IYU A;  3FYX A;  4AUI A;  3T20 A;  2ODJ A;  4O3Z A;  1GFO A;  2Y0K A;  1QJ9 A;  2XE1 A;  5DL5 A;  1PRN A;  3T0S A;  4U9C A;  2M07 A;  3RBH A;  4D65 A;  4KR8 A;  3LK2 B;  3A2S X;  2J4U P;  2KZ7 A;  2W80 C;  2N2M A;  4GCS A;  4O4X A;  4RLC A;  3SZV A;  3SZD A;  4D5U A;  1GFQ A;  3UPG A;  4AKR A;  2Y0H A;  2PRN A;  4G75 A;  3VE2 A;  2QTK A;  3HWB A;  4FUV A;  1BH3 A;  4RJX A;  2Y7S A;  3AAE A;  4GCP A;  2KXP B;  4AYE C;  2OMF A;  3HW9 A;  1ZHX A;  3SY7 A;  3AA7 B;  1ZHT A;  3AA0 A;  1GFN A;  1QJ8 A;  3QRC A;  1MM4 A;  1GFM A;  3PQS A;  4N59 A;  2O4V A;  3AAA A;  2MNH A;  3TZG A;  1P4T A;  1BXW A;  1QJP A;  3LK3 A;  2FGQ X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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