4FSOA

Crystal structure of pseudomonas aeruginosa occk10 (opdn)
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
397
structure length
354
Chain Sequence
EDGSARLEARTVYFNRDFKREEAAQGFILDLRSGYTEGALGFGVDTLAMLGIQYAKAGVAGKMRFSQTQFRYGAMLPDMPLLKYNDGRLLPTLFHGAQLTSEEIAGLRFSATRLERYTAAQDIRLHCKNKRYACDTTGNRFDAYQLDYQVNDGLLLQYAQGGLRNVYRQRYLGAVGKRQVGAGKLSADLRWFDSEDAGAARAGKIDNRALSLLLAYAQGGHTLSAGWQRMNGASSMPYLDGSNPYLANYLQVNDFANPEERSWQLRYDFDLRSVGVPGLSFMTRYVNGDHIRLANGDEGKEWERDIELKYIVQSGRFKDLSLRLRNATYRTDFERSARDVDEVRLIASYNLSLF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable porin
publication title Crystal Structures of OccK Subfamily Proteins
rcsb
source organism Pseudomonas aeruginosa
molecule tags Transport protein
total genus 86
structure length 354
sequence length 397
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4fsoA01
2ODJA 1OSMA 2FGRA 3SZVA 4D5UA 4RJWA 3PORA 3JTYA 3POUA 3VY8X 5FVNA 2Y2XA 3NSGA 3T20A 4LSEA 2FGQX 2XE5A 3SY7A 3VZUX 1E54A 4LSIA 1GFMA 2ZFGA 3SZDA 2O4VA 4FSOA 4FT6A 2OMFA 3PRNA 3UPGA 3O0EA 4C69X 2XE2A 1HXTA 3FYXA 2XG6A 2J4UP 3K19A 2ZLDA 6PRNA 5DL6A 4FSPA 2Y0KA 4GCQA 4KRAA 5DL8A 3SY9A 2J1NA 3WI5A 3POXA 4GCPA 2XE3A 1BT9A 3HW9A 2PRNA 4BUMX 1BH3A 2PORA 1PHOA 4LSFA 1GFNA 2Y0LA 4JFBA 1H6S1 4AUIA 4KR4A 2QTKA 4FRTA 4KR8A 1MPFA 3SYBA 4FMSA 1HXXA 3A2SX 3POQA 4LSHA 1HXUA 3HWBA 4GCSA 2XE1A 1PRNA 5DL5A 4FOZA 3EMNX 4D65A 1GFPA 3VZTX 3SYSA 3WI4A 5DL7A 7PRNA 3UU2A 5JDPA 3VY9X 1GFQA 3VZWX 1GFOA 4D64A 2K4TA 3T24A 8PRNA 5PRNA 1OPFA 4FRXA 3T0SA 4RJXA 2Y0HA
chains in the Genus database with same CATH superfamily
5E79O 2YPVA 2ODJA 1OSMA 1ZHYA 2FGRA 3G7GA 4G76A 3SZVA 3DA3A 1T16A 3PORA 4RJWA 3JTYA 4CTDA 4D5UA 2AXTO 3POUA 5KAIO 3VY8X 5H2FO 4XNLA 2IWWA 2R4NA 4AYEC 2XTRA 5FVNA 2Y2XA 3NSGA 4AYMC 1Q9FA 2YNKA 4XNKA 3T20A 2JQYA 3BRZA 2ERVA 2KZ7A 3QRCA 3DZMA 4N75A 3DA4A 1IZNA 4LSEA 1S5LO 2FGQX 3QRAA 5EE2A 2F1VA 2XE5A 3AA0A 3SY7A 1BXWA 4RL9A 2M07A 3VZUX 4AYDC 1E54A 4FQEA 4LSIA 1MM5A 3AA7B 1GFMA 2ZFGA 3PF1A 3SZDA 2O4VA 4FSOA 4N74A 3KVDD 4QQ1A 2LHFA 4FZNA 4AYNA 5IYUA 3AAEB 3PGSA 1ZHZA 2IWVA 5ADXL 2LFUA 4U9CA 4FT6A 1ORMA 2OMFA 3PRNA 3UPGA 3O0EA 1ZHXA 4C69X 2WJRA 2XE2A 4RLCA 1HXTA 4AFKA 3FYXA 2XG6A 3LK41 2J4UP 3V8UA 3K19A 1Q9GA 1YS5A 2ZLDA 6PRNA 5DL6A 2W80C 4FSPA 5AFUL 2N2LA 2Y0KA 4GCQA 4KRAA 4O3YA 5DL8A 3SY9A 4AKRB 2J1NA 3AAAA 4AYID 3WI5A 4FZLA 1QJ8A 3POXA 4GCPA 4K3CA 4C4VA 5B5EO 2WVPA 3AA1A 3PGRA 3LK3A 4O3XB 2XE3A 2KXPB 4PJ0O 3LK42 4PR7A 3A0HO 5GTIO 5TISO 4UB6O 1BT9A 3HW9A 4JCHA 2PRNA 5G26A 4BUMX 4F4BA 3WU2O 1BH3A 3C5OA 2PORA 1ZHTA 4FUVA 1PHOA 4PUXA 4LSFA 1GFNA 2Y0LA 4JFBA 5GV0A 2KZ7B 4E1SA 1H6S1 4IL6O 4AUIA 3A0BO 2F1CX 3PQUA 1IZNB 2R8AA 2XTQA 3DWNA 3DWOX 2W81C 3AA0B 3AA6A 3HOLA 4KR4A 2QTKA 4FRTA 2KDYA 4O3ZA 2Y7SA 2MHLA 4KR8A 4K3BA 4O4UA 5D5DA 1MPFA 3SYBA 4FMSA 2GE4A 1MM4A 3BS0A 1HXXA 1QJ9A 2M06A 3A2SX 3POQA 3UAQA 4LSHA 1HXUA 3HWBA 3TZGA 2WJQA 1THQA 3BRYA 2MNHA 2F1TA 5KAFO 4FESA 4AZLA 4B61A 4GCSA 2R4LA 4AKMA 2XMXA 4N59A 2XE1A 3LK2A 4UB8O 2KC0A 5GTHO 5G39A 1PRNA 1P4TA 3AAAB 3AA7A 4FOZA 5DL5A 4C00A 3EMNX 4C4VB 4D65A 3AA1B 3PGUA 3LK3B 1GFPA 3VZTX 3SYSA 3AAEA 3WI4A 5DL7A 3HOEA 2N2MA 3KZIO 4N58A 4Z3TA 1ZHWA 3PQSA 7PRNA 2R88A 3UU2A 5JDPA 3VY9X 1GFQA 4GF4A 3VE1A 3VZWX 1GFOA 4D64A 5B66O 4O4XA 4E1TA 3NJTA 5ADXK 2K4TA 3T24A 1G90A 4G75A 3LK2B 2K0LA 4RLBA 5G38A 3VE2A 1QJPA 8PRNA 4GHBA 3RBHA 5PRNA 1OPFA 4FRXA 3T0SA 4AKRA 2R4OA 2R4PA 4RJXA 2X27X 4O3WA 2JMMA 5T5FA 3GP6A 2R89A 2Y0HA 2KXPA 2X9KA 1T1LA 5AFUK 3JCUO 4O49A 3AA6B 4FZMA 5G3AA
chains in the Genus database with same CATH topology
2YPVA 2ODJA 1OSMA 1ZHYA 2FGRA 3G7GA 4G76A 3SZVA 3DA3A 4RJWA 3PORA 4D5UA 3JTYA 3POUA 3VY8X 4XNLA 4AYEC 2XTRA 5FVNA 2Y2XA 3NSGA 4AYMC 1Q9FA 2YNKA 4XNKA 3T20A 2ERVA 2KZ7A 3QRCA 3DA4A 1IZNA 4LSEA 2FGQX 3QRAA 5EE2A 2F1VA 2XE5A 3AA0A 3SY7A 1BXWA 4RL9A 2M07A 3VZUX 4AYDC 1E54A 4LSIA 1MM5A 3AA7B 1GFMA 2ZFGA 3SZDA 2O4VA 4FSOA 4QQ1A 3KVDD 2LHFA 4FZNA 4AYNA 5IYUA 3AAEB 5ADXL 1ZHZA 2LFUA 4U9CA 4FT6A 1ORMA 2OMFA 3PRNA 3UPGA 3O0EA 1ZHXA 4C69X 2XE2A 4RLCA 4AFKA 1HXTA 3FYXA 2XG6A 3LK41 2J4UP 3V8UA 3K19A 1Q9GA 1YS5A 2ZLDA 6PRNA 5DL6A 2W80C 4FSPA 5AFUL 2N2LA 2Y0KA 4GCQA 4KRAA 4O3YA 5DL8A 3SY9A 4AKRB 2J1NA 3AAAA 4AYID 3WI5A 4FZLA 1QJ8A 3POXA 4GCPA 3AA1A 3LK3A 4O3XB 2XE3A 2KXPB 3LK42 1BT9A 3HW9A 4JCHA 2PRNA 5G26A 4BUMX 4F4BA 1BH3A 3C5OA 2PORA 1ZHTA 4FUVA 1PHOA 4PUXA 4LSFA 1GFNA 2Y0LA 4JFBA 5GV0A 2KZ7B 4E1SA 1H6S1 4AUIA 3PQUA 1IZNB 2XTQA 2W81C 3AA0B 3AA6A 3HOLA 4KR4A 2QTKA 4FRTA 2KDYA 4O3ZA 2Y7SA 2MHLA 4KR8A 4O4UA 5D5DA 1MPFA 3SYBA 4FMSA 2GE4A 1MM4A 1HXXA 1QJ9A 2M06A 3A2SX 3POQA 3UAQA 4LSHA 1HXUA 3HWBA 3TZGA 1THQA 2MNHA 2F1TA 4FESA 4AZLA 4B61A 4GCSA 4AKMA 2XMXA 4N59A 2XE1A 3LK2A 2KC0A 1PRNA 1P4TA 3AAAB 3AA7A 4FOZA 5DL5A 3EMNX 4D65A 3AA1B 3LK3B 1GFPA 3VZTX 3SYSA 3AAEA 3WI4A 5DL7A 3HOEA 2N2MA 4N58A 4Z3TA 1ZHWA 3PQSA 7PRNA 3UU2A 5JDPA 3VY9X 1GFQA 4GF4A 3VE1A 3VZWX 1GFOA 4D64A 4O4XA 4E1TA 5ADXK 2K4TA 3T24A 1G90A 4G75A 3LK2B 2K0LA 4RLBA 3VE2A 1QJPA 8PRNA 4GHBA 3RBHA 5PRNA 1OPFA 4FRXA 3T0SA 4AKRA 4RJXA 2X27X 4O3WA 2JMMA 5T5FA 3GP6A 2Y0HA 2KXPA 5AFUK 4O49A 3AA6B 4FZMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ODJ A;  1OSM A;  2FGR A;  3SZV A;  4D5U A;  4RJW A;  3POR A;  3JTY A;  3POU A;  3VY8 X;  5FVN A;  2Y2X A;  3NSG A;  3T20 A;  4LSE A;  2FGQ X;  2XE5 A;  3SY7 A;  3VZU X;  1E54 A;  4LSI A;  1GFM A;  2ZFG A;  3SZD A;  2O4V A;  4FSO A;  4FT6 A;  2OMF A;  3PRN A;  3UPG A;  3O0E A;  4C69 X;  2XE2 A;  1HXT A;  3FYX A;  2XG6 A;  2J4U P;  3K19 A;  2ZLD A;  6PRN A;  5DL6 A;  4FSP A;  2Y0K A;  4GCQ A;  4KRA A;  5DL8 A;  3SY9 A;  2J1N A;  3WI5 A;  3POX A;  4GCP A;  2XE3 A;  1BT9 A;  3HW9 A;  2PRN A;  4BUM X;  1BH3 A;  2POR A;  1PHO A;  4LSF A;  1GFN A;  2Y0L A;  4JFB A;  1H6S 1;  4AUI A;  4KR4 A;  2QTK A;  4FRT A;  4KR8 A;  1MPF A;  3SYB A;  4FMS A;  1HXX A;  3A2S X;  3POQ A;  4LSH A;  1HXU A;  3HWB A;  4GCS A;  2XE1 A;  1PRN A;  5DL5 A;  4FOZ A;  3EMN X;  4D65 A;  1GFP A;  3VZT X;  3SYS A;  3WI4 A;  5DL7 A;  7PRN A;  3UU2 A;  5JDP A;  3VY9 X;  1GFQ A;  3VZW X;  1GFO A;  4D64 A;  2K4T A;  3T24 A;  8PRN A;  5PRN A;  1OPF A;  4FRX A;  3T0S A;  4RJX A;  2Y0H A; 
#chains in the Genus database with same CATH topology
 5E79 O;  2YPV A;  2ODJ A;  1OSM A;  1ZHY A;  2FGR A;  3G7G A;  4G76 A;  3SZV A;  3DA3 A;  1T16 A;  3POR A;  4RJW A;  3JTY A;  4CTD A;  4D5U A;  2AXT O;  3POU A;  5KAI O;  3VY8 X;  5H2F O;  4XNL A;  2IWW A;  2R4N A;  4AYE C;  2XTR A;  5FVN A;  2Y2X A;  3NSG A;  4AYM C;  1Q9F A;  2YNK A;  4XNK A;  3T20 A;  2JQY A;  3BRZ A;  2ERV A;  2KZ7 A;  3QRC A;  3DZM A;  4N75 A;  3DA4 A;  1IZN A;  4LSE A;  1S5L O;  2FGQ X;  3QRA A;  5EE2 A;  2F1V A;  2XE5 A;  3AA0 A;  3SY7 A;  1BXW A;  4RL9 A;  2M07 A;  3VZU X;  4AYD C;  1E54 A;  4FQE A;  4LSI A;  1MM5 A;  3AA7 B;  1GFM A;  2ZFG A;  3PF1 A;  3SZD A;  2O4V A;  4FSO A;  4N74 A;  3KVD D;  4QQ1 A;  2LHF A;  4FZN A;  4AYN A;  5IYU A;  3AAE B;  3PGS A;  1ZHZ A;  2IWV A;  5ADX L;  2LFU A;  4U9C A;  4FT6 A;  1ORM A;  2OMF A;  3PRN A;  3UPG A;  3O0E A;  1ZHX A;  4C69 X;  2WJR A;  2XE2 A;  4RLC A;  1HXT A;  4AFK A;  3FYX A;  2XG6 A;  3LK4 1;  2J4U P;  3V8U A;  3K19 A;  1Q9G A;  1YS5 A;  2ZLD A;  6PRN A;  5DL6 A;  2W80 C;  4FSP A;  5AFU L;  2N2L A;  2Y0K A;  4GCQ A;  4KRA A;  4O3Y A;  5DL8 A;  3SY9 A;  4AKR B;  2J1N A;  3AAA A;  4AYI D;  3WI5 A;  4FZL A;  1QJ8 A;  3POX A;  4GCP A;  4K3C A;  4C4V A;  5B5E O;  2WVP A;  3AA1 A;  3PGR A;  3LK3 A;  4O3X B;  2XE3 A;  2KXP B;  4PJ0 O;  3LK4 2;  4PR7 A;  3A0H O;  5GTI O;  5TIS O;  4UB6 O;  1BT9 A;  3HW9 A;  4JCH A;  2PRN A;  5G26 A;  4BUM X;  4F4B A;  3WU2 O;  1BH3 A;  3C5O A;  2POR A;  1ZHT A;  4FUV A;  1PHO A;  4PUX A;  4LSF A;  1GFN A;  2Y0L A;  4JFB A;  5GV0 A;  2KZ7 B;  4E1S A;  1H6S 1;  4IL6 O;  4AUI A;  3A0B O;  2F1C X;  3PQU A;  1IZN B;  2R8A A;  2XTQ A;  3DWN A;  3DWO X;  2W81 C;  3AA0 B;  3AA6 A;  3HOL A;  4KR4 A;  2QTK A;  4FRT A;  2KDY A;  4O3Z A;  2Y7S A;  2MHL A;  4KR8 A;  4K3B A;  4O4U A;  5D5D A;  1MPF A;  3SYB A;  4FMS A;  2GE4 A;  1MM4 A;  3BS0 A;  1HXX A;  1QJ9 A;  2M06 A;  3A2S X;  3POQ A;  3UAQ A;  4LSH A;  1HXU A;  3HWB A;  3TZG A;  2WJQ A;  1THQ A;  3BRY A;  2MNH A;  2F1T A;  5KAF O;  4FES A;  4AZL A;  4B61 A;  4GCS A;  2R4L A;  4AKM A;  2XMX A;  4N59 A;  2XE1 A;  3LK2 A;  4UB8 O;  2KC0 A;  5GTH O;  5G39 A;  1PRN A;  1P4T A;  3AAA B;  3AA7 A;  4FOZ A;  5DL5 A;  4C00 A;  3EMN X;  4C4V B;  4D65 A;  3AA1 B;  3PGU A;  3LK3 B;  1GFP A;  3VZT X;  3SYS A;  3AAE A;  3WI4 A;  5DL7 A;  3HOE A;  2N2M A;  3KZI O;  4N58 A;  4Z3T A;  1ZHW A;  3PQS A;  7PRN A;  2R88 A;  3UU2 A;  5JDP A;  3VY9 X;  1GFQ A;  4GF4 A;  3VE1 A;  3VZW X;  1GFO A;  4D64 A;  5B66 O;  4O4X A;  4E1T A;  3NJT A;  5ADX K;  2K4T A;  3T24 A;  1G90 A;  4G75 A;  3LK2 B;  2K0L A;  4RLB A;  5G38 A;  3VE2 A;  1QJP A;  8PRN A;  4GHB A;  3RBH A;  5PRN A;  1OPF A;  4FRX A;  3T0S A;  4AKR A;  2R4O A;  2R4P A;  4RJX A;  2X27 X;  4O3W A;  2JMM A;  5T5F A;  3GP6 A;  2R89 A;  2Y0H A;  2KXP A;  2X9K A;  1T1L A;  5AFU K;  3JCU O;  4O49 A;  3AA6 B;  4FZM A;  5G3A A; 
#chains in the Genus database with same CATH homology
 2YPV A;  2ODJ A;  1OSM A;  1ZHY A;  2FGR A;  3G7G A;  4G76 A;  3SZV A;  3DA3 A;  4RJW A;  3POR A;  4D5U A;  3JTY A;  3POU A;  3VY8 X;  4XNL A;  4AYE C;  2XTR A;  5FVN A;  2Y2X A;  3NSG A;  4AYM C;  1Q9F A;  2YNK A;  4XNK A;  3T20 A;  2ERV A;  2KZ7 A;  3QRC A;  3DA4 A;  1IZN A;  4LSE A;  2FGQ X;  3QRA A;  5EE2 A;  2F1V A;  2XE5 A;  3AA0 A;  3SY7 A;  1BXW A;  4RL9 A;  2M07 A;  3VZU X;  4AYD C;  1E54 A;  4LSI A;  1MM5 A;  3AA7 B;  1GFM A;  2ZFG A;  3SZD A;  2O4V A;  4FSO A;  4QQ1 A;  3KVD D;  2LHF A;  4FZN A;  4AYN A;  5IYU A;  3AAE B;  5ADX L;  1ZHZ A;  2LFU A;  4U9C A;  4FT6 A;  1ORM A;  2OMF A;  3PRN A;  3UPG A;  3O0E A;  1ZHX A;  4C69 X;  2XE2 A;  4RLC A;  4AFK A;  1HXT A;  3FYX A;  2XG6 A;  3LK4 1;  2J4U P;  3V8U A;  3K19 A;  1Q9G A;  1YS5 A;  2ZLD A;  6PRN A;  5DL6 A;  2W80 C;  4FSP A;  5AFU L;  2N2L A;  2Y0K A;  4GCQ A;  4KRA A;  4O3Y A;  5DL8 A;  3SY9 A;  4AKR B;  2J1N A;  3AAA A;  4AYI D;  3WI5 A;  4FZL A;  1QJ8 A;  3POX A;  4GCP A;  3AA1 A;  3LK3 A;  4O3X B;  2XE3 A;  2KXP B;  3LK4 2;  1BT9 A;  3HW9 A;  4JCH A;  2PRN A;  5G26 A;  4BUM X;  4F4B A;  1BH3 A;  3C5O A;  2POR A;  1ZHT A;  4FUV A;  1PHO A;  4PUX A;  4LSF A;  1GFN A;  2Y0L A;  4JFB A;  5GV0 A;  2KZ7 B;  4E1S A;  1H6S 1;  4AUI A;  3PQU A;  1IZN B;  2XTQ A;  2W81 C;  3AA0 B;  3AA6 A;  3HOL A;  4KR4 A;  2QTK A;  4FRT A;  2KDY A;  4O3Z A;  2Y7S A;  2MHL A;  4KR8 A;  4O4U A;  5D5D A;  1MPF A;  3SYB A;  4FMS A;  2GE4 A;  1MM4 A;  1HXX A;  1QJ9 A;  2M06 A;  3A2S X;  3POQ A;  3UAQ A;  4LSH A;  1HXU A;  3HWB A;  3TZG A;  1THQ A;  2MNH A;  2F1T A;  4FES A;  4AZL A;  4B61 A;  4GCS A;  4AKM A;  2XMX A;  4N59 A;  2XE1 A;  3LK2 A;  2KC0 A;  1PRN A;  1P4T A;  3AAA B;  3AA7 A;  4FOZ A;  5DL5 A;  3EMN X;  4D65 A;  3AA1 B;  3LK3 B;  1GFP A;  3VZT X;  3SYS A;  3AAE A;  3WI4 A;  5DL7 A;  3HOE A;  2N2M A;  4N58 A;  4Z3T A;  1ZHW A;  3PQS A;  7PRN A;  3UU2 A;  5JDP A;  3VY9 X;  1GFQ A;  4GF4 A;  3VE1 A;  3VZW X;  1GFO A;  4D64 A;  4O4X A;  4E1T A;  5ADX K;  2K4T A;  3T24 A;  1G90 A;  4G75 A;  3LK2 B;  2K0L A;  4RLB A;  3VE2 A;  1QJP A;  8PRN A;  4GHB A;  3RBH A;  5PRN A;  1OPF A;  4FRX A;  3T0S A;  4AKR A;  4RJX A;  2X27 X;  4O3W A;  2JMM A;  5T5F A;  3GP6 A;  2Y0H A;  2KXP A;  5AFU K;  4O49 A;  3AA6 B;  4FZM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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