4FSOA

Crystal structure of pseudomonas aeruginosa occk10 (opdn)
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
397
structure length
354
Chain Sequence
EDGSARLEARTVYFNRDFKREEAAQGFILDLRSGYTEGALGFGVDTLAMLGIQYAKAGVAGKMRFSQTQFRYGAMLPDMPLLKYNDGRLLPTLFHGAQLTSEEIAGLRFSATRLERYTAAQDIRLHCKNKRYACDTTGNRFDAYQLDYQVNDGLLLQYAQGGLRNVYRQRYLGAVGKRQVGAGKLSADLRWFDSEDAGAARAGKIDNRALSLLLAYAQGGHTLSAGWQRMNGASSMPYLDGSNPYLANYLQVNDFANPEERSWQLRYDFDLRSVGVPGLSFMTRYVNGDHIRLANGDEGKEWERDIELKYIVQSGRFKDLSLRLRNATYRTDFERSARDVDEVRLIASYNLSLF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Probable porin
publication title Crystal Structures of OccK Subfamily Proteins
rcsb
source organism Pseudomonas aeruginosa
total genus 86
structure length 354
sequence length 397
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4fsoA01
5DL8A 4LSEA 1GFMA 1GFNA 2J1NA 4D64A 1E54A 3HWBA 1GFQA 3POQA 2Y0KA 4KRAA 1PRNA 2XE2A 5DL7A 3SZDA 3WI5A 6PRNA 3SYSA 1PHOA 3T0SA 3UPGA 3NSGA 4KR8A 1HXUA 2PORA 4AUIA 4D5UA 2K4TA 3FYXA 3SYBA 1MPFA 3VY8X 4FRTA 3SY9A 4C69X 3HW9A 5PRNA 2Y2XA 3SY7A 3K19A 3VZUX 3VZWX 3T20A 4FSPA 5DL6A 2O4VA 2XE5A 4FRXA 2Y0HA 3POUA 4FMSA 4LSFA 2XE1A 1HXXA 2Y0LA 4FSOA 1HXTA 4KR4A 4D65A 4GCQA 3SZVA 3VZTX 3WI4A 1OPFA 1GFOA 1BH3A 3VY9X 2ZFGA 2FGQX 5DL5A 7PRNA 4GCPA 1GFPA 3UU2A 4RJXA 3JTYA 4GCSA 4BUMX 2OMFA 4FOZA 2ODJA 2XG6A 3PRNA 3PORA 5FVNA 2J4UP 1OSMA 5JDPA 3O0EA 3POXA 8PRNA 3T24A 2XE3A 4LSHA 1H6S1 4JFBA 2FGRA 1BT9A 4RJWA 2QTKA 4FT6A 2PRNA 2ZLDA 3A2SX 3EMNX 4LSIA
chains in the Genus database with same CATH superfamily
5DL8A 2R4OA 4LSEA 5D5DA 1GFMA 3LK2B 1GFNA 4C4VB 5B66O 3C5OA 2J1NA 3A0BO 2Y7SA 4N75A 2KZ7A 2R89A 1THQA 3LK41 3BS0A 4CTDA 4D64A 1G90A 1E54A 3HWBA 1GFQA 4U9CA 2N2MA 2WJRA 3POQA 5GTHO 3AA6B 2Y0KA 4KRAA 1PRNA 2XE2A 5DL7A 5GV0A 3DA3A 3GP6A 2R8AA 3PGSA 4K3CA 3SZDA 3WI5A 4O3YA 6PRNA 4AYID 3SYSA 3AA7A 1PHOA 3PGRA 3T0SA 5T5FA 3UPGA 1IZNA 3LK3A 4FUVA 4RLBA 3NSGA 5AFUK 4KR8A 3AAEA 1HXUA 5AFUL 4JCHA 5E79O 3AA0B 2PORA 4O4UA 4UB6O 3VE2A 5B5EO 4FZNA 3AAAB 4AUIA 4D5UA 2R4NA 3LK42 2K4TA 2W80C 4RLCA 3FYXA 2R88A 3SYBA 1MPFA 3VY8X 2KC0A 1ZHYA 4O3XB 2W81C 4FRTA 2MHLA 5KAFO 2N2LA 3SY9A 4FZLA 3HW9A 4N59A 3DZMA 5PRNA 4C69X 1MM4A 2IWWA 2LFUA 2Y2XA 4F4BA 3SY7A 2F1TA 3K19A 3VZUX 2WJQA 2X27X 4XNLA 3VZWX 3T20A 4FSPA 3VE1A 4E1SA 4PUXA 1ORMA 5G38A 4O49A 2JMMA 3LK3B 1ZHZA 3AA1B 5DL6A 3PF1A 4AYDC 4G75A 3AAEB 2O4VA 2XE5A 3DA4A 4GHBA 4AKRA 4FRXA 5GTIO 1QJ8A 2Y0HA 3KZIO 2GE4A 3HOEA 3POUA 4FMSA 4LSFA 5ADXL 2XE1A 2M06A 2XMXA 3KVDD 1T1LA 1HXXA 2Y0LA 3DWNA 3NJTA 3HOLA 4FQEA 2YNKA 4IL6O 4N58A 1S5LO 4O3ZA 4AYMC 3BRYA 4FSOA 4UB8O 4B61A 1HXTA 3LK2A 2X9KA 4FESA 4C4VA 2KZ7B 2F1VA 4KR4A 2J4UP 3WU2O 3TZGA 4D65A 1Q9FA 4GCQA 4PR7A 5KAIO 3SZVA 3VZTX 3WI4A 1OPFA 3A0HO 4RL9A 2R4PA 4E1TA 4K3BA 2XTRA 3UAQA 3AA6A 4Z3TA 5G3AA 5IYUA 4O4XA 1GFOA 1BH3A 3AA7B 1MM5A 2AXTO 3VY9X 3RBHA 2LHFA 2ZFGA 1IZNB 2FGQX 5DL5A 2R4LA 4AFKA 2KXPA 4GCPA 1GFPA 7PRNA 3UU2A 1T16A 4RJXA 3QRCA 3JTYA 4GCSA 4C00A 4BUMX 5ADXK 4XNKA 1ZHWA 2JQYA 3JCUO 5EE2A 2ERVA 2OMFA 1P4TA 3AA0A 1YS5A 2ODJA 4FOZA 2XG6A 4GF4A 4QQ1A 4AZLA 1Q9GA 1ZHTA 3AAAA 3PRNA 2IWVA 3PORA 1BXWA 2M07A 1OSMA 2K0LA 5FVNA 3O0EA 3PGUA 3G7GA 3POXA 5JDPA 2F1CX 4PJ0O 5TISO 1QJ9A 8PRNA 2KDYA 3QRAA 2MNHA 4AKMA 3T24A 2YPVA 5H2FO 2XE3A 4AYNA 2XTQA 4FZMA 1H6S1 4LSHA 4JFBA 2FGRA 2KXPB 1BT9A 4RJWA 3PQSA 2QTKA 4AKRB 3AA1A 4O3WA 4N74A 1QJPA 1ZHXA 4AYEC 4FT6A 4G76A 3PQUA 3BRZA 3DWOX 2PRNA 5G39A 2WVPA 3V8UA 2ZLDA 3A2SX 3EMNX 4LSIA 5G26A
chains in the Genus database with same CATH topology
5DL8A 4LSEA 5D5DA 1GFMA 3LK2B 1GFNA 3C5OA 2J1NA 2Y7SA 2KZ7A 3LK41 1THQA 4D64A 1G90A 1E54A 3HWBA 1GFQA 4U9CA 2N2MA 3POQA 3AA6B 2Y0KA 4KRAA 1PRNA 2XE2A 5DL7A 5GV0A 3DA3A 3GP6A 3SZDA 3WI5A 6PRNA 4O3YA 4AYID 3SYSA 3AA7A 1PHOA 3T0SA 5T5FA 3UPGA 1IZNA 3LK3A 4FUVA 4RLBA 3NSGA 5AFUK 4KR8A 3AAEA 1HXUA 5AFUL 4JCHA 3AA0B 2PORA 4O4UA 3VE2A 4FZNA 3AAAB 4AUIA 4D5UA 3LK42 2K4TA 2W80C 4RLCA 3FYXA 3SYBA 1MPFA 3VY8X 2KC0A 1ZHYA 4O3XB 2W81C 4FRTA 2MHLA 2N2LA 3SY9A 4FZLA 3HW9A 4N59A 5PRNA 4C69X 1MM4A 2LFUA 2Y2XA 4F4BA 3SY7A 2F1TA 3K19A 3VZUX 2X27X 4XNLA 3VZWX 3T20A 4FSPA 3VE1A 4E1SA 4PUXA 1ORMA 4O49A 2JMMA 3LK3B 1ZHZA 3AA1B 5DL6A 4AYDC 4G75A 3AAEB 2O4VA 2XE5A 3DA4A 4GHBA 4AKRA 4FRXA 1QJ8A 2Y0HA 3POUA 2GE4A 3HOEA 4FMSA 4LSFA 5ADXL 2XE1A 2M06A 2XMXA 3KVDD 1HXXA 2Y0LA 3HOLA 4AYMC 2YNKA 4N58A 4O3ZA 4FSOA 4B61A 1HXTA 3LK2A 4FESA 2KZ7B 2F1VA 4KR4A 2J4UP 3TZGA 4D65A 1Q9FA 4GCQA 3SZVA 3VZTX 3WI4A 1OPFA 4RL9A 4E1TA 2XTRA 3UAQA 3AA6A 4Z3TA 5IYUA 4O4XA 1GFOA 1BH3A 3AA7B 1MM5A 3VY9X 3RBHA 2LHFA 2ZFGA 1IZNB 2FGQX 5DL5A 4AFKA 7PRNA 2KXPA 4GCPA 1GFPA 3UU2A 4RJXA 3QRCA 3JTYA 4GCSA 4BUMX 5ADXK 4XNKA 1ZHWA 5EE2A 2ERVA 2OMFA 1P4TA 3AA0A 1YS5A 2ODJA 4FOZA 2XG6A 4GF4A 4QQ1A 4AZLA 1Q9GA 1ZHTA 3AAAA 3PRNA 3PORA 5FVNA 1BXWA 2M07A 1OSMA 2K0LA 5JDPA 3O0EA 3POXA 3G7GA 1QJ9A 8PRNA 2KDYA 3QRAA 2MNHA 4AKMA 3T24A 2YPVA 2XE3A 4AYNA 2XTQA 4FZMA 1H6S1 4LSHA 4JFBA 2FGRA 2KXPB 1BT9A 4RJWA 3PQSA 2QTKA 4AKRB 3AA1A 4O3WA 1QJPA 1ZHXA 4AYEC 4FT6A 4G76A 3PQUA 2PRNA 3V8UA 2ZLDA 3A2SX 3EMNX 4LSIA 5G26A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DL8 A;  4LSE A;  1GFM A;  1GFN A;  2J1N A;  4D64 A;  1E54 A;  3HWB A;  1GFQ A;  3POQ A;  2Y0K A;  4KRA A;  1PRN A;  2XE2 A;  5DL7 A;  3SZD A;  3WI5 A;  6PRN A;  3SYS A;  1PHO A;  3T0S A;  3UPG A;  3NSG A;  4KR8 A;  1HXU A;  2POR A;  4AUI A;  4D5U A;  2K4T A;  3FYX A;  3SYB A;  1MPF A;  3VY8 X;  4FRT A;  3SY9 A;  4C69 X;  3HW9 A;  5PRN A;  2Y2X A;  3SY7 A;  3K19 A;  3VZU X;  3VZW X;  3T20 A;  4FSP A;  5DL6 A;  2O4V A;  2XE5 A;  4FRX A;  2Y0H A;  3POU A;  4FMS A;  4LSF A;  2XE1 A;  1HXX A;  2Y0L A;  4FSO A;  1HXT A;  4KR4 A;  4D65 A;  4GCQ A;  3SZV A;  3VZT X;  3WI4 A;  1OPF A;  1GFO A;  1BH3 A;  3VY9 X;  2ZFG A;  2FGQ X;  5DL5 A;  7PRN A;  4GCP A;  1GFP A;  3UU2 A;  4RJX A;  3JTY A;  4GCS A;  4BUM X;  2OMF A;  4FOZ A;  2ODJ A;  2XG6 A;  3PRN A;  3POR A;  5FVN A;  2J4U P;  1OSM A;  5JDP A;  3O0E A;  3POX A;  8PRN A;  3T24 A;  2XE3 A;  4LSH A;  1H6S 1;  4JFB A;  2FGR A;  1BT9 A;  4RJW A;  2QTK A;  4FT6 A;  2PRN A;  2ZLD A;  3A2S X;  3EMN X;  4LSI A; 
#chains in the Genus database with same CATH topology
 5DL8 A;  2R4O A;  4LSE A;  5D5D A;  1GFM A;  3LK2 B;  1GFN A;  4C4V B;  5B66 O;  3C5O A;  2J1N A;  3A0B O;  2Y7S A;  4N75 A;  2KZ7 A;  2R89 A;  1THQ A;  3LK4 1;  3BS0 A;  4CTD A;  4D64 A;  1G90 A;  1E54 A;  3HWB A;  1GFQ A;  4U9C A;  2N2M A;  2WJR A;  3POQ A;  5GTH O;  3AA6 B;  2Y0K A;  4KRA A;  1PRN A;  2XE2 A;  5DL7 A;  5GV0 A;  3DA3 A;  3GP6 A;  2R8A A;  3PGS A;  4K3C A;  3SZD A;  3WI5 A;  4O3Y A;  6PRN A;  4AYI D;  3SYS A;  3AA7 A;  1PHO A;  3PGR A;  3T0S A;  5T5F A;  3UPG A;  1IZN A;  3LK3 A;  4FUV A;  4RLB A;  3NSG A;  5AFU K;  4KR8 A;  3AAE A;  1HXU A;  5AFU L;  4JCH A;  5E79 O;  3AA0 B;  2POR A;  4O4U A;  4UB6 O;  3VE2 A;  5B5E O;  4FZN A;  3AAA B;  4AUI A;  4D5U A;  2R4N A;  3LK4 2;  2K4T A;  2W80 C;  4RLC A;  3FYX A;  2R88 A;  3SYB A;  1MPF A;  3VY8 X;  2KC0 A;  1ZHY A;  4O3X B;  2W81 C;  4FRT A;  2MHL A;  5KAF O;  2N2L A;  3SY9 A;  4FZL A;  3HW9 A;  4N59 A;  3DZM A;  5PRN A;  4C69 X;  1MM4 A;  2IWW A;  2LFU A;  2Y2X A;  4F4B A;  3SY7 A;  2F1T A;  3K19 A;  3VZU X;  2WJQ A;  2X27 X;  4XNL A;  3VZW X;  3T20 A;  4FSP A;  3VE1 A;  4E1S A;  4PUX A;  1ORM A;  5G38 A;  4O49 A;  2JMM A;  3LK3 B;  1ZHZ A;  3AA1 B;  5DL6 A;  3PF1 A;  4AYD C;  4G75 A;  3AAE B;  2O4V A;  2XE5 A;  3DA4 A;  4GHB A;  4AKR A;  4FRX A;  5GTI O;  1QJ8 A;  2Y0H A;  3KZI O;  2GE4 A;  3HOE A;  3POU A;  4FMS A;  4LSF A;  5ADX L;  2XE1 A;  2M06 A;  2XMX A;  3KVD D;  1T1L A;  1HXX A;  2Y0L A;  3DWN A;  3NJT A;  3HOL A;  4FQE A;  2YNK A;  4IL6 O;  4N58 A;  1S5L O;  4O3Z A;  4AYM C;  3BRY A;  4FSO A;  4UB8 O;  4B61 A;  1HXT A;  3LK2 A;  2X9K A;  4FES A;  4C4V A;  2KZ7 B;  2F1V A;  4KR4 A;  2J4U P;  3WU2 O;  3TZG A;  4D65 A;  1Q9F A;  4GCQ A;  4PR7 A;  5KAI O;  3SZV A;  3VZT X;  3WI4 A;  1OPF A;  3A0H O;  4RL9 A;  2R4P A;  4E1T A;  4K3B A;  2XTR A;  3UAQ A;  3AA6 A;  4Z3T A;  5G3A A;  5IYU A;  4O4X A;  1GFO A;  1BH3 A;  3AA7 B;  1MM5 A;  2AXT O;  3VY9 X;  3RBH A;  2LHF A;  2ZFG A;  1IZN B;  2FGQ X;  5DL5 A;  2R4L A;  4AFK A;  2KXP A;  4GCP A;  1GFP A;  7PRN A;  3UU2 A;  1T16 A;  4RJX A;  3QRC A;  3JTY A;  4GCS A;  4C00 A;  4BUM X;  5ADX K;  4XNK A;  1ZHW A;  2JQY A;  3JCU O;  5EE2 A;  2ERV A;  2OMF A;  1P4T A;  3AA0 A;  1YS5 A;  2ODJ A;  4FOZ A;  2XG6 A;  4GF4 A;  4QQ1 A;  4AZL A;  1Q9G A;  1ZHT A;  3AAA A;  3PRN A;  2IWV A;  3POR A;  1BXW A;  2M07 A;  1OSM A;  2K0L A;  5FVN A;  3O0E A;  3PGU A;  3G7G A;  3POX A;  5JDP A;  2F1C X;  4PJ0 O;  5TIS O;  1QJ9 A;  8PRN A;  2KDY A;  3QRA A;  2MNH A;  4AKM A;  3T24 A;  2YPV A;  5H2F O;  2XE3 A;  4AYN A;  2XTQ A;  4FZM A;  1H6S 1;  4LSH A;  4JFB A;  2FGR A;  2KXP B;  1BT9 A;  4RJW A;  3PQS A;  2QTK A;  4AKR B;  3AA1 A;  4O3W A;  4N74 A;  1QJP A;  1ZHX A;  4AYE C;  4FT6 A;  4G76 A;  3PQU A;  3BRZ A;  3DWO X;  2PRN A;  5G39 A;  2WVP A;  3V8U A;  2ZLD A;  3A2S X;  3EMN X;  4LSI A;  5G26 A; 
#chains in the Genus database with same CATH homology
 5DL8 A;  4LSE A;  5D5D A;  1GFM A;  3LK2 B;  1GFN A;  3C5O A;  2J1N A;  2Y7S A;  2KZ7 A;  3LK4 1;  1THQ A;  4D64 A;  1G90 A;  1E54 A;  3HWB A;  1GFQ A;  4U9C A;  2N2M A;  3POQ A;  3AA6 B;  2Y0K A;  4KRA A;  1PRN A;  2XE2 A;  5DL7 A;  5GV0 A;  3DA3 A;  3GP6 A;  3SZD A;  3WI5 A;  6PRN A;  4O3Y A;  4AYI D;  3SYS A;  3AA7 A;  1PHO A;  3T0S A;  5T5F A;  3UPG A;  1IZN A;  3LK3 A;  4FUV A;  4RLB A;  3NSG A;  5AFU K;  4KR8 A;  3AAE A;  1HXU A;  5AFU L;  4JCH A;  3AA0 B;  2POR A;  4O4U A;  3VE2 A;  4FZN A;  3AAA B;  4AUI A;  4D5U A;  3LK4 2;  2K4T A;  2W80 C;  4RLC A;  3FYX A;  3SYB A;  1MPF A;  3VY8 X;  2KC0 A;  1ZHY A;  4O3X B;  2W81 C;  4FRT A;  2MHL A;  2N2L A;  3SY9 A;  4FZL A;  3HW9 A;  4N59 A;  5PRN A;  4C69 X;  1MM4 A;  2LFU A;  2Y2X A;  4F4B A;  3SY7 A;  2F1T A;  3K19 A;  3VZU X;  2X27 X;  4XNL A;  3VZW X;  3T20 A;  4FSP A;  3VE1 A;  4E1S A;  4PUX A;  1ORM A;  4O49 A;  2JMM A;  3LK3 B;  1ZHZ A;  3AA1 B;  5DL6 A;  4AYD C;  4G75 A;  3AAE B;  2O4V A;  2XE5 A;  3DA4 A;  4GHB A;  4AKR A;  4FRX A;  1QJ8 A;  2Y0H A;  3POU A;  2GE4 A;  3HOE A;  4FMS A;  4LSF A;  5ADX L;  2XE1 A;  2M06 A;  2XMX A;  3KVD D;  1HXX A;  2Y0L A;  3HOL A;  4AYM C;  2YNK A;  4N58 A;  4O3Z A;  4FSO A;  4B61 A;  1HXT A;  3LK2 A;  4FES A;  2KZ7 B;  2F1V A;  4KR4 A;  2J4U P;  3TZG A;  4D65 A;  1Q9F A;  4GCQ A;  3SZV A;  3VZT X;  3WI4 A;  1OPF A;  4RL9 A;  4E1T A;  2XTR A;  3UAQ A;  3AA6 A;  4Z3T A;  5IYU A;  4O4X A;  1GFO A;  1BH3 A;  3AA7 B;  1MM5 A;  3VY9 X;  3RBH A;  2LHF A;  2ZFG A;  1IZN B;  2FGQ X;  5DL5 A;  4AFK A;  7PRN A;  2KXP A;  4GCP A;  1GFP A;  3UU2 A;  4RJX A;  3QRC A;  3JTY A;  4GCS A;  4BUM X;  5ADX K;  4XNK A;  1ZHW A;  5EE2 A;  2ERV A;  2OMF A;  1P4T A;  3AA0 A;  1YS5 A;  2ODJ A;  4FOZ A;  2XG6 A;  4GF4 A;  4QQ1 A;  4AZL A;  1Q9G A;  1ZHT A;  3AAA A;  3PRN A;  3POR A;  5FVN A;  1BXW A;  2M07 A;  1OSM A;  2K0L A;  5JDP A;  3O0E A;  3POX A;  3G7G A;  1QJ9 A;  8PRN A;  2KDY A;  3QRA A;  2MNH A;  4AKM A;  3T24 A;  2YPV A;  2XE3 A;  4AYN A;  2XTQ A;  4FZM A;  1H6S 1;  4LSH A;  4JFB A;  2FGR A;  2KXP B;  1BT9 A;  4RJW A;  3PQS A;  2QTK A;  4AKR B;  3AA1 A;  4O3W A;  1QJP A;  1ZHX A;  4AYE C;  4FT6 A;  4G76 A;  3PQU A;  2PRN A;  3V8U A;  2ZLD A;  3A2S X;  3EMN X;  4LSI A;  5G26 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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