4FSOA

Crystal structure of pseudomonas aeruginosa occk10 (opdn)
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
397
structure length
354
Chain Sequence
EDGSARLEARTVYFNRDFKREEAAQGFILDLRSGYTEGALGFGVDTLAMLGIQYAKAGVAGKMRFSQTQFRYGAMLPDMPLLKYNDGRLLPTLFHGAQLTSEEIAGLRFSATRLERYTAAQDIRLHCKNKRYACDTTGNRFDAYQLDYQVNDGLLLQYAQGGLRNVYRQRYLGAVGKRQVGAGKLSADLRWFDSEDAGAARAGKIDNRALSLLLAYAQGGHTLSAGWQRMNGASSMPYLDGSNPYLANYLQVNDFANPEERSWQLRYDFDLRSVGVPGLSFMTRYVNGDHIRLANGDEGKEWERDIELKYIVQSGRFKDLSLRLRNATYRTDFERSARDVDEVRLIASYNLSLF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
source organism Pseudomonas aeruginosa
publication title Crystal Structures of OccK Subfamily Proteins
rcsb
molecule keywords Probable porin
total genus 86
structure length 354
sequence length 397
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4fsoA01
3SY7A 3PRNA 4RJWA 2K4TA 3T0SA 3A2SX 5PRNA 2FGRA 2PORA 4D64A 4FRTA 1HXUA 4LSHA 2XE5A 2QTKA 2O4VA 3JTYA 4FMSA 3VZWX 3EMNX 3HWBA 4C69X 4GCPA 1MPFA 4FRXA 1BT9A 4KRAA 2J1NA 1E54A 3NSGA 4BUMX 3VZTX 2XG6A 3UU2A 3WI4A 2Y0LA 4GCSA 2PRNA 2J4UP 2FGQX 2Y0KA 4D65A 3VY8X 4FT6A 1GFNA 1HXTA 2ZLDA 1GFQA 3WI5A 2OMFA 3POUA 3SYBA 1PRNA 5DL7A 4KR8A 5FVNA 4D5UA 5DL5A 3SZDA 4FSPA 5DL8A 3SZVA 4JFBA 4KR4A 1HXXA 3VY9X 3HW9A 3SY9A 8PRNA 1GFMA 2XE1A 3K19A 1BH3A 1OPFA 4LSFA 3FYXA 1H6S1 2Y2XA 5JDPA 5DL6A 3T20A 1PHOA 6PRNA 3T24A 3POQA 2ODJA 4AUIA 2ZFGA 3SYSA 2Y0HA 2XE2A 3POXA 4FOZA 3O0EA 1GFPA 4RJXA 4LSIA 3UPGA 3PORA 1GFOA 2XE3A 1OSMA 3VZUX 4LSEA 4GCQA 4FSOA 7PRNA
chains in the Genus database with same CATH superfamily
3SY7A 2WJRA 1YS5A 3PRNA 5GV0A 4QQ1A 4RJWA 2K4TA 3G7GA 2KXPA 3DA3A 1Q9FA 3T0SA 3A2SX 3LK2B 4FZNA 1ZHWA 2KZ7B 5PRNA 4AKRB 4K3BA 2FGRA 2PORA 5EE2A 4AYDC 4AYEC 5G3AA 2Y7SA 4FRTA 4D64A 1HXUA 4LSHA 4RLCA 5ADXK 3LK2A 4XNLA 3DZMA 2KZ7A 2XE5A 4PR7A 4XNKA 4AYID 2QTKA 4G76A 2O4VA 3JTYA 3BS0A 3QRAA 4UB8O 4AFKA 4AKRA 3LK3B 1THQA 2XTQA 2IWWA 4FMSA 4UB6O 4PJ0O 3VZWX 4O4UA 3EMNX 3HWBA 4C69X 4GCPA 1MPFA 3PGRA 3AAEB 1BT9A 4FRXA 5KAIO 4KRAA 5G26A 1T1LA 2KC0A 3LK3A 5D5DA 2J1NA 4O3WA 3VE2A 3LK41 2MHLA 2W80C 2XMXA 5ADXL 1E54A 3AAEA 3PF1A 4N75A 5H2FO 5IYUA 3A0HO 3NSGA 1ZHXA 4AYMC 4BUMX 4FZLA 2F1CX 3GP6A 2R4LA 3VZTX 4AZLA 5TISO 2XG6A 5G38A 3UU2A 3QRCA 3WI4A 2Y0LA 4O49A 3RBHA 2LHFA 3VE1A 3C5OA 3HOLA 5AFUL 1G90A 4CTDA 4GCSA 2PRNA 4U9CA 5T5FA 2J4UP 5KAFO 1BXWA 2AXTO 5B5EO 2R88A 5G39A 2FGQX 5GTHO 4FZMA 1QJPA 2N2LA 2Y0KA 4D65A 3VY8X 2R4PA 1ZHTA 4AYNA 3AAAB 4FT6A 1GFNA 1HXTA 4E1TA 2W81C 2ZLDA 5E79O 2M06A 4C00A 4N59A 2K0LA 3AA0B 1GFQA 2M07A 5GTIO 4C4VB 3WI5A 2OMFA 4B61A 3AAAA 3POUA 3SYBA 1PRNA 5DL7A 1ZHZA 3AA0A 4KR8A 5FVNA 3TZGA 4D5UA 4PUXA 5DL5A 4GHBA 2ERVA 3SZDA 4FSPA 5DL8A 3SZVA 4JFBA 4KR4A 1MM4A 3NJTA 2WJQA 2R89A 2WVPA 3HOEA 3PGUA 4FESA 3JCUO 3UAQA 3DA4A 3LK42 3WU2O 4O3ZA 1HXXA 1MM5A 4FUVA 3VY9X 2YNKA 2R8AA 4O3YA 4RLBA 2GE4A 2R4OA 3HW9A 3SY9A 4GF4A 2R4NA 8PRNA 2MNHA 1ZHYA 3AA6B 3BRZA 2JMMA 3PQUA 3PQSA 1GFMA 1QJ8A 2XE1A 3DWNA 3K19A 1BH3A 4FQEA 1OPFA 2JQYA 3FYXA 4LSFA 2XTRA 1H6S1 2Y2XA 5JDPA 3AA6A 5B66O 5DL6A 4RL9A 3T20A 1PHOA 1IZNB 2KDYA 6PRNA 2F1TA 3T24A 1S5LO 2X27X 3AA1B 3POQA 4G75A 2ODJA 4JCHA 4N74A 4C4VA 4N58A 2N2MA 4F4BA 3PGSA 2F1VA 2ZFGA 3SYSA 2Y0HA 4AUIA 2XE2A 1P4TA 3AA7B 1IZNA 3BRYA 3POXA 4FOZA 3O0EA 4IL6O 3A0BO 1GFPA 1Q9GA 4RJXA 4AKMA 4LSIA 3AA1A 1T16A 4E1SA 1QJ9A 3KVDD 4O4XA 3PORA 4O3XB 2LFUA 1GFOA 3UPGA 2XE3A 1ORMA 1OSMA 2KXPB 2YPVA 3DWOX 3KZIO 4LSEA 3VZUX 3AA7A 2IWVA 4GCQA 4Z3TA 4FSOA 5AFUK 3V8UA 4K3CA 7PRNA 2X9KA
chains in the Genus database with same CATH topology
3SY7A 1YS5A 3PRNA 5GV0A 4QQ1A 4RJWA 2K4TA 3G7GA 2KXPA 3DA3A 1Q9FA 3T0SA 3A2SX 3LK2B 4FZNA 1ZHWA 2KZ7B 5PRNA 4AKRB 2FGRA 2PORA 5EE2A 4AYDC 4AYEC 4D64A 2Y7SA 4FRTA 5ADXK 1HXUA 4LSHA 4RLCA 3LK2A 4XNLA 2KZ7A 2XE5A 4XNKA 4AYID 2QTKA 4G76A 2O4VA 3JTYA 3QRAA 4AFKA 4AKRA 3LK3B 1THQA 2XTQA 4FMSA 3VZWX 4O4UA 3EMNX 3HWBA 4C69X 4GCPA 1MPFA 4FRXA 3AAEB 1BT9A 4KRAA 5G26A 3LK3A 2KC0A 5D5DA 2J1NA 4O3WA 3VE2A 3LK41 2MHLA 2W80C 2XMXA 5ADXL 1E54A 3AAEA 5IYUA 3NSGA 1ZHXA 4AYMC 4BUMX 4FZLA 3GP6A 3VZTX 4AZLA 2XG6A 3UU2A 3QRCA 3WI4A 2Y0LA 4O49A 3RBHA 2LHFA 3VE1A 3C5OA 3HOLA 5AFUL 1G90A 4GCSA 2PRNA 4U9CA 5T5FA 2J4UP 1BXWA 2FGQX 4FZMA 1QJPA 2N2LA 2Y0KA 4D65A 3VY8X 1ZHTA 4AYNA 3AAAB 4FT6A 1GFNA 1HXTA 4E1TA 2W81C 2ZLDA 2M06A 4N59A 2K0LA 3AA0B 1GFQA 2M07A 3WI5A 2OMFA 4B61A 3AAAA 3POUA 3SYBA 1PRNA 5DL7A 1ZHZA 3AA0A 4KR8A 5FVNA 3TZGA 4D5UA 4PUXA 5DL5A 4GHBA 2ERVA 3SZDA 4FSPA 5DL8A 3SZVA 4JFBA 4KR4A 1MM4A 3HOEA 3UAQA 4FESA 3DA4A 3LK42 4O3ZA 1HXXA 1MM5A 4FUVA 3VY9X 2YNKA 4RLBA 4O3YA 2GE4A 3HW9A 3SY9A 4GF4A 8PRNA 2MNHA 1ZHYA 3AA6B 2JMMA 3PQUA 3PQSA 1GFMA 1QJ8A 2XE1A 3K19A 1BH3A 1OPFA 4LSFA 3FYXA 2XTRA 1H6S1 2Y2XA 5JDPA 3AA6A 5DL6A 4RL9A 3T20A 1PHOA 1IZNB 2KDYA 6PRNA 2F1TA 3T24A 2X27X 4G75A 3AA1B 3POQA 4JCHA 2ODJA 4N58A 2N2MA 4F4BA 2F1VA 2ZFGA 3SYSA 2Y0HA 4AUIA 2XE2A 1P4TA 3AA7B 1IZNA 3POXA 4FOZA 3O0EA 1GFPA 1Q9GA 4RJXA 4AKMA 4LSIA 3AA1A 4E1SA 1QJ9A 3KVDD 4O4XA 3PORA 4O3XB 2LFUA 1GFOA 3UPGA 2XE3A 1ORMA 1OSMA 2KXPB 2YPVA 3VZUX 4LSEA 4Z3TA 3AA7A 4GCQA 5AFUK 4FSOA 3V8UA 7PRNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SY7 A;  3PRN A;  4RJW A;  2K4T A;  3T0S A;  3A2S X;  5PRN A;  2FGR A;  2POR A;  4D64 A;  4FRT A;  1HXU A;  4LSH A;  2XE5 A;  2QTK A;  2O4V A;  3JTY A;  4FMS A;  3VZW X;  3EMN X;  3HWB A;  4C69 X;  4GCP A;  1MPF A;  4FRX A;  1BT9 A;  4KRA A;  2J1N A;  1E54 A;  3NSG A;  4BUM X;  3VZT X;  2XG6 A;  3UU2 A;  3WI4 A;  2Y0L A;  4GCS A;  2PRN A;  2J4U P;  2FGQ X;  2Y0K A;  4D65 A;  3VY8 X;  4FT6 A;  1GFN A;  1HXT A;  2ZLD A;  1GFQ A;  3WI5 A;  2OMF A;  3POU A;  3SYB A;  1PRN A;  5DL7 A;  4KR8 A;  5FVN A;  4D5U A;  5DL5 A;  3SZD A;  4FSP A;  5DL8 A;  3SZV A;  4JFB A;  4KR4 A;  1HXX A;  3VY9 X;  3HW9 A;  3SY9 A;  8PRN A;  1GFM A;  2XE1 A;  3K19 A;  1BH3 A;  1OPF A;  4LSF A;  3FYX A;  1H6S 1;  2Y2X A;  5JDP A;  5DL6 A;  3T20 A;  1PHO A;  6PRN A;  3T24 A;  3POQ A;  2ODJ A;  4AUI A;  2ZFG A;  3SYS A;  2Y0H A;  2XE2 A;  3POX A;  4FOZ A;  3O0E A;  1GFP A;  4RJX A;  4LSI A;  3UPG A;  3POR A;  1GFO A;  2XE3 A;  1OSM A;  3VZU X;  4LSE A;  4GCQ A;  4FSO A;  7PRN A; 
#chains in the Genus database with same CATH topology
 3SY7 A;  2WJR A;  1YS5 A;  3PRN A;  5GV0 A;  4QQ1 A;  4RJW A;  2K4T A;  3G7G A;  2KXP A;  3DA3 A;  1Q9F A;  3T0S A;  3A2S X;  3LK2 B;  4FZN A;  1ZHW A;  2KZ7 B;  5PRN A;  4AKR B;  4K3B A;  2FGR A;  2POR A;  5EE2 A;  4AYD C;  4AYE C;  5G3A A;  2Y7S A;  4FRT A;  4D64 A;  1HXU A;  4LSH A;  4RLC A;  5ADX K;  3LK2 A;  4XNL A;  3DZM A;  2KZ7 A;  2XE5 A;  4PR7 A;  4XNK A;  4AYI D;  2QTK A;  4G76 A;  2O4V A;  3JTY A;  3BS0 A;  3QRA A;  4UB8 O;  4AFK A;  4AKR A;  3LK3 B;  1THQ A;  2XTQ A;  2IWW A;  4FMS A;  4UB6 O;  4PJ0 O;  3VZW X;  4O4U A;  3EMN X;  3HWB A;  4C69 X;  4GCP A;  1MPF A;  3PGR A;  3AAE B;  1BT9 A;  4FRX A;  5KAI O;  4KRA A;  5G26 A;  1T1L A;  2KC0 A;  3LK3 A;  5D5D A;  2J1N A;  4O3W A;  3VE2 A;  3LK4 1;  2MHL A;  2W80 C;  2XMX A;  5ADX L;  1E54 A;  3AAE A;  3PF1 A;  4N75 A;  5H2F O;  5IYU A;  3A0H O;  3NSG A;  1ZHX A;  4AYM C;  4BUM X;  4FZL A;  2F1C X;  3GP6 A;  2R4L A;  3VZT X;  4AZL A;  5TIS O;  2XG6 A;  5G38 A;  3UU2 A;  3QRC A;  3WI4 A;  2Y0L A;  4O49 A;  3RBH A;  2LHF A;  3VE1 A;  3C5O A;  3HOL A;  5AFU L;  1G90 A;  4CTD A;  4GCS A;  2PRN A;  4U9C A;  5T5F A;  2J4U P;  5KAF O;  1BXW A;  2AXT O;  5B5E O;  2R88 A;  5G39 A;  2FGQ X;  5GTH O;  4FZM A;  1QJP A;  2N2L A;  2Y0K A;  4D65 A;  3VY8 X;  2R4P A;  1ZHT A;  4AYN A;  3AAA B;  4FT6 A;  1GFN A;  1HXT A;  4E1T A;  2W81 C;  2ZLD A;  5E79 O;  2M06 A;  4C00 A;  4N59 A;  2K0L A;  3AA0 B;  1GFQ A;  2M07 A;  5GTI O;  4C4V B;  3WI5 A;  2OMF A;  4B61 A;  3AAA A;  3POU A;  3SYB A;  1PRN A;  5DL7 A;  1ZHZ A;  3AA0 A;  4KR8 A;  5FVN A;  3TZG A;  4D5U A;  4PUX A;  5DL5 A;  4GHB A;  2ERV A;  3SZD A;  4FSP A;  5DL8 A;  3SZV A;  4JFB A;  4KR4 A;  1MM4 A;  3NJT A;  2WJQ A;  2R89 A;  2WVP A;  3HOE A;  3PGU A;  4FES A;  3JCU O;  3UAQ A;  3DA4 A;  3LK4 2;  3WU2 O;  4O3Z A;  1HXX A;  1MM5 A;  4FUV A;  3VY9 X;  2YNK A;  2R8A A;  4O3Y A;  4RLB A;  2GE4 A;  2R4O A;  3HW9 A;  3SY9 A;  4GF4 A;  2R4N A;  8PRN A;  2MNH A;  1ZHY A;  3AA6 B;  3BRZ A;  2JMM A;  3PQU A;  3PQS A;  1GFM A;  1QJ8 A;  2XE1 A;  3DWN A;  3K19 A;  1BH3 A;  4FQE A;  1OPF A;  2JQY A;  3FYX A;  4LSF A;  2XTR A;  1H6S 1;  2Y2X A;  5JDP A;  3AA6 A;  5B66 O;  5DL6 A;  4RL9 A;  3T20 A;  1PHO A;  1IZN B;  2KDY A;  6PRN A;  2F1T A;  3T24 A;  1S5L O;  2X27 X;  3AA1 B;  3POQ A;  4G75 A;  2ODJ A;  4JCH A;  4N74 A;  4C4V A;  4N58 A;  2N2M A;  4F4B A;  3PGS A;  2F1V A;  2ZFG A;  3SYS A;  2Y0H A;  4AUI A;  2XE2 A;  1P4T A;  3AA7 B;  1IZN A;  3BRY A;  3POX A;  4FOZ A;  3O0E A;  4IL6 O;  3A0B O;  1GFP A;  1Q9G A;  4RJX A;  4AKM A;  4LSI A;  3AA1 A;  1T16 A;  4E1S A;  1QJ9 A;  3KVD D;  4O4X A;  3POR A;  4O3X B;  2LFU A;  1GFO A;  3UPG A;  2XE3 A;  1ORM A;  1OSM A;  2KXP B;  2YPV A;  3DWO X;  3KZI O;  4LSE A;  3VZU X;  3AA7 A;  2IWV A;  4GCQ A;  4Z3T A;  4FSO A;  5AFU K;  3V8U A;  4K3C A;  7PRN A;  2X9K A; 
#chains in the Genus database with same CATH homology
 3SY7 A;  1YS5 A;  3PRN A;  5GV0 A;  4QQ1 A;  4RJW A;  2K4T A;  3G7G A;  2KXP A;  3DA3 A;  1Q9F A;  3T0S A;  3A2S X;  3LK2 B;  4FZN A;  1ZHW A;  2KZ7 B;  5PRN A;  4AKR B;  2FGR A;  2POR A;  5EE2 A;  4AYD C;  4AYE C;  4D64 A;  2Y7S A;  4FRT A;  5ADX K;  1HXU A;  4LSH A;  4RLC A;  3LK2 A;  4XNL A;  2KZ7 A;  2XE5 A;  4XNK A;  4AYI D;  2QTK A;  4G76 A;  2O4V A;  3JTY A;  3QRA A;  4AFK A;  4AKR A;  3LK3 B;  1THQ A;  2XTQ A;  4FMS A;  3VZW X;  4O4U A;  3EMN X;  3HWB A;  4C69 X;  4GCP A;  1MPF A;  4FRX A;  3AAE B;  1BT9 A;  4KRA A;  5G26 A;  3LK3 A;  2KC0 A;  5D5D A;  2J1N A;  4O3W A;  3VE2 A;  3LK4 1;  2MHL A;  2W80 C;  2XMX A;  5ADX L;  1E54 A;  3AAE A;  5IYU A;  3NSG A;  1ZHX A;  4AYM C;  4BUM X;  4FZL A;  3GP6 A;  3VZT X;  4AZL A;  2XG6 A;  3UU2 A;  3QRC A;  3WI4 A;  2Y0L A;  4O49 A;  3RBH A;  2LHF A;  3VE1 A;  3C5O A;  3HOL A;  5AFU L;  1G90 A;  4GCS A;  2PRN A;  4U9C A;  5T5F A;  2J4U P;  1BXW A;  2FGQ X;  4FZM A;  1QJP A;  2N2L A;  2Y0K A;  4D65 A;  3VY8 X;  1ZHT A;  4AYN A;  3AAA B;  4FT6 A;  1GFN A;  1HXT A;  4E1T A;  2W81 C;  2ZLD A;  2M06 A;  4N59 A;  2K0L A;  3AA0 B;  1GFQ A;  2M07 A;  3WI5 A;  2OMF A;  4B61 A;  3AAA A;  3POU A;  3SYB A;  1PRN A;  5DL7 A;  1ZHZ A;  3AA0 A;  4KR8 A;  5FVN A;  3TZG A;  4D5U A;  4PUX A;  5DL5 A;  4GHB A;  2ERV A;  3SZD A;  4FSP A;  5DL8 A;  3SZV A;  4JFB A;  4KR4 A;  1MM4 A;  3HOE A;  3UAQ A;  4FES A;  3DA4 A;  3LK4 2;  4O3Z A;  1HXX A;  1MM5 A;  4FUV A;  3VY9 X;  2YNK A;  4RLB A;  4O3Y A;  2GE4 A;  3HW9 A;  3SY9 A;  4GF4 A;  8PRN A;  2MNH A;  1ZHY A;  3AA6 B;  2JMM A;  3PQU A;  3PQS A;  1GFM A;  1QJ8 A;  2XE1 A;  3K19 A;  1BH3 A;  1OPF A;  4LSF A;  3FYX A;  2XTR A;  1H6S 1;  2Y2X A;  5JDP A;  3AA6 A;  5DL6 A;  4RL9 A;  3T20 A;  1PHO A;  1IZN B;  2KDY A;  6PRN A;  2F1T A;  3T24 A;  2X27 X;  4G75 A;  3AA1 B;  3POQ A;  4JCH A;  2ODJ A;  4N58 A;  2N2M A;  4F4B A;  2F1V A;  2ZFG A;  3SYS A;  2Y0H A;  4AUI A;  2XE2 A;  1P4T A;  3AA7 B;  1IZN A;  3POX A;  4FOZ A;  3O0E A;  1GFP A;  1Q9G A;  4RJX A;  4AKM A;  4LSI A;  3AA1 A;  4E1S A;  1QJ9 A;  3KVD D;  4O4X A;  3POR A;  4O3X B;  2LFU A;  1GFO A;  3UPG A;  2XE3 A;  1ORM A;  1OSM A;  2KXP B;  2YPV A;  3VZU X;  4LSE A;  4Z3T A;  3AA7 A;  4GCQ A;  5AFU K;  4FSO A;  3V8U A;  7PRN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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