4FSOA

Crystal structure of pseudomonas aeruginosa occk10 (opdn)
Total Genus 86
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
397
structure length
354
Chain Sequence
b'EDGSARLEARTVYFNRDFKREEAAQGFILDLRSGYTEGALGFGVDTLAMLGIQYAKAGVAGKMRFSQTQFRYGAMLPDMPLLKYNDGRLLPTLFHGAQLTSEEIAGLRFSATRLERYTAAQDIRLHCKNKRYACDTTGNRFDAYQLDYQVNDGLLLQYAQGGLRNVYRQRYLGAVGKRQVGAGKLSADLRWFDSEDAGAARAGKIDNRALSLLLAYAQGGHTLSAGWQRMNGASSMPYLDGSNPYLANYLQVNDFANPEERSWQLRYDFDLRSVGVPGLSFMTRYVNGDHIRLANGDEGKEWERDIELKYIVQSGRFKDLSLRLRNATYRTDFERSARDVDEVRLIASYNLSLF'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable porin
publication title Crystal Structures of OccK Subfamily Proteins
rcsb
source organism Pseudomonas aeruginosa
molecule tags Transport protein
total genus 86
structure length 354
sequence length 397
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4fsoA01
4LSEA 1MPFA 5PRNA 1BH3A 1PRNA 3SYSA 3SZVA 3POUA 3T0SA 4FMSA 2XG6A 1BT9A 1GFOA 3PRNA 4RJXA 3T20A 2XE1A 8PRNA 3POXA 5JDPA 1HXXA 2OMFA 4FRXA 4FSOA 5DL6A 1HXUA 6PRNA 3T24A 3PORA 4D64A 3VY8X 4KR8A 2Y0KA 7PRNA 4C69X 4RJWA 4FOZA 4KRAA 5DL7A 2J4UP 1H6S1 2ZLDA 3SZDA 4FSPA 3SY7A 1GFNA 4D65A 2Y0HA 4GCSA 3FYXA 2O4VA 3K19A 5DL5A 5FVNA 3A2SX 3EMNX 2XE5A 2FGRA 3HWBA 2XE2A 2ZFGA 4LSFA 4JFBA 2J1NA 3NSGA 3JTYA 3O0EA 1HXTA 2PRNA 1GFQA 2PORA 1GFPA 1GFMA 2XE3A 3VZTX 1OSMA 3WI4A 2FGQX 2ODJA 1OPFA 4BUMX 1PHOA 4AUIA 5DL8A 2Y0LA 3POQA 3HW9A 4FT6A 2K4TA 4D5UA 3UU2A 4FRTA 3UPGA 3VZWX 2QTKA 4GCQA 1E54A 2Y2XA 3VY9X 3SYBA 3SY9A 4GCPA 4LSHA 3WI5A 3VZUX 4LSIA 4KR4A
chains in the Genus database with same CATH superfamily
3BRZA 3A0BO 2GE4A 2JMMA 1MPFA 2AXTO 4LSEA 4O3XB 5PRNA 4FQEA 2WJQA 1BH3A 1ORMA 2R8AA 3AA6B 1PRNA 3SYSA 2N2MA 3KZIO 5ADXL 4KR4A 3SZVA 2R4OA 3POUA 3TZGA 3T0SA 4FMSA 2W80C 2MNHA 2X9KA 1BT9A 1GFOA 2XG6A 3LK3A 3PRNA 5EE2A 1ZHTA 4RJXA 4AYNA 4AYID 3T20A 2XE1A 3KVDD 8PRNA 4RLBA 4PUXA 3POXA 3DZMA 3PQUA 1HXXA 2OMFA 2R4PA 3A0HO 4FZNA 3C5OA 3AA0A 4AYDC 4G76A 4FRXA 4C00A 5B5EO 4FSOA 1Q9FA 5DL6A 3WU2O 1HXUA 1IZNB 4AYMC 3VE2A 2M07A 2YPVA 1T1LA 3G7GA 3HOLA 3T24A 3PORA 4AZLA 3VY8X 4D64A 6PRNA 4KR8A 2KXPB 2Y0KA 2IWVA 3UAQA 4JCHA 1Q9GA 4FZLA 3AA7B 3DWNA 3LK42 4O3ZA 5G39A 5G3AA 4E1SA 5AFUL 7PRNA 4C4VA 2KC0A 4C69X 4RJWA 2KDYA 4FOZA 4O3YA 3AAAA 4KRAA 5DL7A 1QJ8A 4XNLA 5D5DA 2J4UP 1H6S1 3PF1A 2ZLDA 3SZDA 2ERVA 2XTQA 3AAEA 4FSPA 4U9CA 3SY7A 4AFKA 3QRCA 1MM5A 5KAIO 1GFNA 2Y7SA 4D65A 2Y0HA 3V8UA 3LK2A 4GCSA 1THQA 4UB6O 3FYXA 4CTDA 2O4VA 3K19A 3PQSA 2W81C 5DL5A 2R89A 3GP6A 4GF4A 5FVNA 5GTIO 3A2SX 5B66O 4IL6O 4N58A 2MHLA 3AAEB 3EMNX 3LK3B 2XE5A 4XNKA 2FGRA 3PGSA 1BXWA 2XTRA 4F4BA 5IYUA 3HWBA 4K3CA 2XE2A 3RBHA 4FESA 5G26A 4O4XA 2ZFGA 2F1TA 4UB8O 2F1VA 2R88A 2XMXA 2R4NA 3AA0B 4GHBA 3AA1A 4LSFA 5JDPA 4E1TA 2IWWA 2WJRA 2J1NA 4JFBA 3NSGA 3JTYA 1ZHZA 4AKRA 3O0EA 1HXTA 2PRNA 3VE1A 3BS0A 4N59A 1GFQA 2PORA 3DWOX 3JCUO 5ADXK 1GFPA 5E79O 1GFMA 3NJTA 3PGRA 3BRYA 4RL9A 4C4VB 3AA6A 1S5LO 3DA3A 2LHFA 2XE3A 3AAAB 2K0LA 1OSMA 2JQYA 5G38A 3VZTX 4O49A 1ZHWA 3WI4A 2KZ7A 1QJ9A 2FGQX 2ODJA 1OPFA 4N75A 4FZMA 4BUMX 4RLCA 4O3WA 1PHOA 2X27X 2YNKA 4AUIA 1QJPA 3LK2B 4G75A 3QRAA 4K3BA 4B61A 5TISO 4AKMA 5DL8A 2LFUA 2Y0LA 4QQ1A 3POQA 4PR7A 2N2LA 3HW9A 1T16A 2KZ7B 4FT6A 1IZNA 5H2FO 2WVPA 5AFUK 2K4TA 4D5UA 1YS5A 4FRTA 3UU2A 1P4TA 3UPGA 4O4UA 3VZWX 2QTKA 4GCQA 5GV0A 1E54A 2Y2XA 2KXPA 3VY9X 4Z3TA 1MM4A 3DA4A 3SYBA 3SY9A 2M06A 2F1CX 3AA7A 1ZHYA 5GTHO 5T5FA 3AA1B 1G90A 4GCPA 4PJ0O 3LK41 4N74A 1ZHXA 4LSHA 2R4LA 3WI5A 4AKRB 4AYEC 3PGUA 3VZUX 5KAFO 4LSIA 3HOEA 4FUVA
chains in the Genus database with same CATH topology
4LSEA 2GE4A 2JMMA 1MPFA 4O3XB 5PRNA 1BH3A 1ORMA 3AA6B 1PRNA 3SYSA 2N2MA 5ADXL 4KR4A 3SZVA 3POUA 3TZGA 3T0SA 4FMSA 2W80C 2MNHA 2XG6A 1BT9A 1GFOA 3LK3A 3PRNA 5EE2A 4AYNA 1ZHTA 4RJXA 4AYID 3T20A 2XE1A 3KVDD 8PRNA 4RLBA 4PUXA 3POXA 5JDPA 3PQUA 1HXXA 2OMFA 4FZNA 4AYDC 3C5OA 3AA0A 4G76A 4FRXA 4FSOA 1Q9FA 5DL6A 1HXUA 1IZNB 4AYMC 3VE2A 2M07A 2YPVA 3G7GA 3HOLA 3T24A 6PRNA 3PORA 4AZLA 3VY8X 4D64A 4KR8A 2KXPB 2Y0KA 3UAQA 4JCHA 1Q9GA 4FZLA 3AA7B 4O3ZA 3LK42 4E1SA 5AFUL 7PRNA 2KC0A 4C69X 4RJWA 2KDYA 4FOZA 4O3YA 3AAAA 4KRAA 5DL7A 1QJ8A 4XNLA 5D5DA 2J4UP 1H6S1 2ZLDA 3SZDA 2ERVA 2XTQA 3AAEA 4FSPA 4U9CA 3SY7A 4AFKA 3QRCA 1MM5A 5IYUA 1GFNA 2Y7SA 4D65A 2Y0HA 3V8UA 3LK2A 4GCSA 1THQA 3FYXA 2O4VA 3K19A 3PQSA 2W81C 5DL5A 5FVNA 3GP6A 4GF4A 3A2SX 4N58A 2MHLA 3AAEB 3EMNX 3LK3B 2XE5A 4XNKA 2FGRA 4F4BA 1BXWA 2XTRA 3HWBA 3RBHA 2XE2A 4FESA 5G26A 4O4XA 2ZFGA 2F1TA 2F1VA 2XMXA 3AA0B 4GHBA 4LSFA 3AA1A 4E1TA 4JFBA 2J1NA 3NSGA 3JTYA 1ZHZA 4AKRA 3O0EA 1HXTA 2PRNA 3VE1A 4N59A 1GFQA 2PORA 5ADXK 1GFPA 1GFMA 4RL9A 3AA6A 3DA3A 2LHFA 2XE3A 3AAAB 2K0LA 1OSMA 3VZTX 3WI4A 4O49A 1ZHWA 2KZ7A 1QJ9A 2FGQX 2ODJA 1OPFA 4BUMX 4FZMA 4RLCA 4O3WA 1PHOA 2X27X 2YNKA 4AUIA 1QJPA 3LK2B 4G75A 3QRAA 4B61A 4AKMA 5DL8A 2LFUA 2Y0LA 4QQ1A 3POQA 2N2LA 3HW9A 2KZ7B 4FT6A 1IZNA 5AFUK 2K4TA 4D5UA 1YS5A 4FRTA 3UU2A 1P4TA 3UPGA 4O4UA 3VZWX 2QTKA 4GCQA 5GV0A 1E54A 2Y2XA 2KXPA 3VY9X 4Z3TA 1MM4A 3DA4A 3SYBA 3SY9A 2M06A 3AA7A 1ZHYA 5T5FA 3AA1B 1G90A 4GCPA 3LK41 1ZHXA 4LSHA 3WI5A 4AKRB 4AYEC 3VZUX 4LSIA 3HOEA 4FUVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LSE A;  1MPF A;  5PRN A;  1BH3 A;  1PRN A;  3SYS A;  3SZV A;  3POU A;  3T0S A;  4FMS A;  2XG6 A;  1BT9 A;  1GFO A;  3PRN A;  4RJX A;  3T20 A;  2XE1 A;  8PRN A;  3POX A;  5JDP A;  1HXX A;  2OMF A;  4FRX A;  4FSO A;  5DL6 A;  1HXU A;  6PRN A;  3T24 A;  3POR A;  4D64 A;  3VY8 X;  4KR8 A;  2Y0K A;  7PRN A;  4C69 X;  4RJW A;  4FOZ A;  4KRA A;  5DL7 A;  2J4U P;  1H6S 1;  2ZLD A;  3SZD A;  4FSP A;  3SY7 A;  1GFN A;  4D65 A;  2Y0H A;  4GCS A;  3FYX A;  2O4V A;  3K19 A;  5DL5 A;  5FVN A;  3A2S X;  3EMN X;  2XE5 A;  2FGR A;  3HWB A;  2XE2 A;  2ZFG A;  4LSF A;  4JFB A;  2J1N A;  3NSG A;  3JTY A;  3O0E A;  1HXT A;  2PRN A;  1GFQ A;  2POR A;  1GFP A;  1GFM A;  2XE3 A;  3VZT X;  1OSM A;  3WI4 A;  2FGQ X;  2ODJ A;  1OPF A;  4BUM X;  1PHO A;  4AUI A;  5DL8 A;  2Y0L A;  3POQ A;  3HW9 A;  4FT6 A;  2K4T A;  4D5U A;  3UU2 A;  4FRT A;  3UPG A;  3VZW X;  2QTK A;  4GCQ A;  1E54 A;  2Y2X A;  3VY9 X;  3SYB A;  3SY9 A;  4GCP A;  4LSH A;  3WI5 A;  3VZU X;  4LSI A;  4KR4 A; 
#chains in the Genus database with same CATH topology
 3BRZ A;  3A0B O;  2GE4 A;  2JMM A;  1MPF A;  2AXT O;  4LSE A;  4O3X B;  5PRN A;  4FQE A;  2WJQ A;  1BH3 A;  1ORM A;  2R8A A;  3AA6 B;  1PRN A;  3SYS A;  2N2M A;  3KZI O;  5ADX L;  4KR4 A;  3SZV A;  2R4O A;  3POU A;  3TZG A;  3T0S A;  4FMS A;  2W80 C;  2MNH A;  2X9K A;  1BT9 A;  1GFO A;  2XG6 A;  3LK3 A;  3PRN A;  5EE2 A;  1ZHT A;  4RJX A;  4AYN A;  4AYI D;  3T20 A;  2XE1 A;  3KVD D;  8PRN A;  4RLB A;  4PUX A;  3POX A;  3DZM A;  3PQU A;  1HXX A;  2OMF A;  2R4P A;  3A0H O;  4FZN A;  3C5O A;  3AA0 A;  4AYD C;  4G76 A;  4FRX A;  4C00 A;  5B5E O;  4FSO A;  1Q9F A;  5DL6 A;  3WU2 O;  1HXU A;  1IZN B;  4AYM C;  3VE2 A;  2M07 A;  2YPV A;  1T1L A;  3G7G A;  3HOL A;  3T24 A;  3POR A;  4AZL A;  3VY8 X;  4D64 A;  6PRN A;  4KR8 A;  2KXP B;  2Y0K A;  2IWV A;  3UAQ A;  4JCH A;  1Q9G A;  4FZL A;  3AA7 B;  3DWN A;  3LK4 2;  4O3Z A;  5G39 A;  5G3A A;  4E1S A;  5AFU L;  7PRN A;  4C4V A;  2KC0 A;  4C69 X;  4RJW A;  2KDY A;  4FOZ A;  4O3Y A;  3AAA A;  4KRA A;  5DL7 A;  1QJ8 A;  4XNL A;  5D5D A;  2J4U P;  1H6S 1;  3PF1 A;  2ZLD A;  3SZD A;  2ERV A;  2XTQ A;  3AAE A;  4FSP A;  4U9C A;  3SY7 A;  4AFK A;  3QRC A;  1MM5 A;  5KAI O;  1GFN A;  2Y7S A;  4D65 A;  2Y0H A;  3V8U A;  3LK2 A;  4GCS A;  1THQ A;  4UB6 O;  3FYX A;  4CTD A;  2O4V A;  3K19 A;  3PQS A;  2W81 C;  5DL5 A;  2R89 A;  3GP6 A;  4GF4 A;  5FVN A;  5GTI O;  3A2S X;  5B66 O;  4IL6 O;  4N58 A;  2MHL A;  3AAE B;  3EMN X;  3LK3 B;  2XE5 A;  4XNK A;  2FGR A;  3PGS A;  1BXW A;  2XTR A;  4F4B A;  5IYU A;  3HWB A;  4K3C A;  2XE2 A;  3RBH A;  4FES A;  5G26 A;  4O4X A;  2ZFG A;  2F1T A;  4UB8 O;  2F1V A;  2R88 A;  2XMX A;  2R4N A;  3AA0 B;  4GHB A;  3AA1 A;  4LSF A;  5JDP A;  4E1T A;  2IWW A;  2WJR A;  2J1N A;  4JFB A;  3NSG A;  3JTY A;  1ZHZ A;  4AKR A;  3O0E A;  1HXT A;  2PRN A;  3VE1 A;  3BS0 A;  4N59 A;  1GFQ A;  2POR A;  3DWO X;  3JCU O;  5ADX K;  1GFP A;  5E79 O;  1GFM A;  3NJT A;  3PGR A;  3BRY A;  4RL9 A;  4C4V B;  3AA6 A;  1S5L O;  3DA3 A;  2LHF A;  2XE3 A;  3AAA B;  2K0L A;  1OSM A;  2JQY A;  5G38 A;  3VZT X;  4O49 A;  1ZHW A;  3WI4 A;  2KZ7 A;  1QJ9 A;  2FGQ X;  2ODJ A;  1OPF A;  4N75 A;  4FZM A;  4BUM X;  4RLC A;  4O3W A;  1PHO A;  2X27 X;  2YNK A;  4AUI A;  1QJP A;  3LK2 B;  4G75 A;  3QRA A;  4K3B A;  4B61 A;  5TIS O;  4AKM A;  5DL8 A;  2LFU A;  2Y0L A;  4QQ1 A;  3POQ A;  4PR7 A;  2N2L A;  3HW9 A;  1T16 A;  2KZ7 B;  4FT6 A;  1IZN A;  5H2F O;  2WVP A;  5AFU K;  2K4T A;  4D5U A;  1YS5 A;  4FRT A;  3UU2 A;  1P4T A;  3UPG A;  4O4U A;  3VZW X;  2QTK A;  4GCQ A;  5GV0 A;  1E54 A;  2Y2X A;  2KXP A;  3VY9 X;  4Z3T A;  1MM4 A;  3DA4 A;  3SYB A;  3SY9 A;  2M06 A;  2F1C X;  3AA7 A;  1ZHY A;  5GTH O;  5T5F A;  3AA1 B;  1G90 A;  4GCP A;  4PJ0 O;  3LK4 1;  4N74 A;  1ZHX A;  4LSH A;  2R4L A;  3WI5 A;  4AKR B;  4AYE C;  3PGU A;  3VZU X;  5KAF O;  4LSI A;  3HOE A;  4FUV A; 
#chains in the Genus database with same CATH homology
 4LSE A;  2GE4 A;  2JMM A;  1MPF A;  4O3X B;  5PRN A;  1BH3 A;  1ORM A;  3AA6 B;  1PRN A;  3SYS A;  2N2M A;  5ADX L;  4KR4 A;  3SZV A;  3POU A;  3TZG A;  3T0S A;  4FMS A;  2W80 C;  2MNH A;  2XG6 A;  1BT9 A;  1GFO A;  3LK3 A;  3PRN A;  5EE2 A;  4AYN A;  1ZHT A;  4RJX A;  4AYI D;  3T20 A;  2XE1 A;  3KVD D;  8PRN A;  4RLB A;  4PUX A;  3POX A;  5JDP A;  3PQU A;  1HXX A;  2OMF A;  4FZN A;  4AYD C;  3C5O A;  3AA0 A;  4G76 A;  4FRX A;  4FSO A;  1Q9F A;  5DL6 A;  1HXU A;  1IZN B;  4AYM C;  3VE2 A;  2M07 A;  2YPV A;  3G7G A;  3HOL A;  3T24 A;  6PRN A;  3POR A;  4AZL A;  3VY8 X;  4D64 A;  4KR8 A;  2KXP B;  2Y0K A;  3UAQ A;  4JCH A;  1Q9G A;  4FZL A;  3AA7 B;  4O3Z A;  3LK4 2;  4E1S A;  5AFU L;  7PRN A;  2KC0 A;  4C69 X;  4RJW A;  2KDY A;  4FOZ A;  4O3Y A;  3AAA A;  4KRA A;  5DL7 A;  1QJ8 A;  4XNL A;  5D5D A;  2J4U P;  1H6S 1;  2ZLD A;  3SZD A;  2ERV A;  2XTQ A;  3AAE A;  4FSP A;  4U9C A;  3SY7 A;  4AFK A;  3QRC A;  1MM5 A;  5IYU A;  1GFN A;  2Y7S A;  4D65 A;  2Y0H A;  3V8U A;  3LK2 A;  4GCS A;  1THQ A;  3FYX A;  2O4V A;  3K19 A;  3PQS A;  2W81 C;  5DL5 A;  5FVN A;  3GP6 A;  4GF4 A;  3A2S X;  4N58 A;  2MHL A;  3AAE B;  3EMN X;  3LK3 B;  2XE5 A;  4XNK A;  2FGR A;  4F4B A;  1BXW A;  2XTR A;  3HWB A;  3RBH A;  2XE2 A;  4FES A;  5G26 A;  4O4X A;  2ZFG A;  2F1T A;  2F1V A;  2XMX A;  3AA0 B;  4GHB A;  4LSF A;  3AA1 A;  4E1T A;  4JFB A;  2J1N A;  3NSG A;  3JTY A;  1ZHZ A;  4AKR A;  3O0E A;  1HXT A;  2PRN A;  3VE1 A;  4N59 A;  1GFQ A;  2POR A;  5ADX K;  1GFP A;  1GFM A;  4RL9 A;  3AA6 A;  3DA3 A;  2LHF A;  2XE3 A;  3AAA B;  2K0L A;  1OSM A;  3VZT X;  3WI4 A;  4O49 A;  1ZHW A;  2KZ7 A;  1QJ9 A;  2FGQ X;  2ODJ A;  1OPF A;  4BUM X;  4FZM A;  4RLC A;  4O3W A;  1PHO A;  2X27 X;  2YNK A;  4AUI A;  1QJP A;  3LK2 B;  4G75 A;  3QRA A;  4B61 A;  4AKM A;  5DL8 A;  2LFU A;  2Y0L A;  4QQ1 A;  3POQ A;  2N2L A;  3HW9 A;  2KZ7 B;  4FT6 A;  1IZN A;  5AFU K;  2K4T A;  4D5U A;  1YS5 A;  4FRT A;  3UU2 A;  1P4T A;  3UPG A;  4O4U A;  3VZW X;  2QTK A;  4GCQ A;  5GV0 A;  1E54 A;  2Y2X A;  2KXP A;  3VY9 X;  4Z3T A;  1MM4 A;  3DA4 A;  3SYB A;  3SY9 A;  2M06 A;  3AA7 A;  1ZHY A;  5T5F A;  3AA1 B;  1G90 A;  4GCP A;  3LK4 1;  1ZHX A;  4LSH A;  3WI5 A;  4AKR B;  4AYE C;  3VZU X;  4LSI A;  3HOE A;  4FUV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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