4FSOA

Crystal structure of pseudomonas aeruginosa occk10 (opdn)
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
397
structure length
354
Chain Sequence
EDGSARLEARTVYFNRDFKREEAAQGFILDLRSGYTEGALGFGVDTLAMLGIQYAKAGVAGKMRFSQTQFRYGAMLPDMPLLKYNDGRLLPTLFHGAQLTSEEIAGLRFSATRLERYTAAQDIRLHCKNKRYACDTTGNRFDAYQLDYQVNDGLLLQYAQGGLRNVYRQRYLGAVGKRQVGAGKLSADLRWFDSEDAGAARAGKIDNRALSLLLAYAQGGHTLSAGWQRMNGASSMPYLDGSNPYLANYLQVNDFANPEERSWQLRYDFDLRSVGVPGLSFMTRYVNGDHIRLANGDEGKEWERDIELKYIVQSGRFKDLSLRLRNATYRTDFERSARDVDEVRLIASYNLSLF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structures of OccK Subfamily Proteins
rcsb
source organism Pseudomonas aeruginosa
molecule tags Transport protein
molecule keywords Probable porin
total genus 86
structure length 354
sequence length 397
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4fsoA01
2PRNA 3JTYA 3HWBA 6PRNA 3POUA 5JDPA 3SZVA 4LSFA 2Y2XA 2XE3A 2Y0KA 2XG6A 4FMSA 4BUMX 1GFOA 2Y0HA 3HW9A 4FRXA 4D5UA 8PRNA 3A2SX 4LSHA 4FT6A 2XE1A 4KR4A 4LSEA 3SZDA 5DL7A 2J1NA 3VY9X 1GFMA 3PORA 3UPGA 5DL5A 5PRNA 3SY9A 3SY7A 2QTKA 5DL8A 1GFQA 4KRAA 3WI5A 3O0EA 4AUIA 1HXXA 2K4TA 4FSPA 4RJXA 4FSOA 2FGQX 3SYBA 3VZWX 2J4UP 4FRTA 4JFBA 1OSMA 3VY8X 1OPFA 2XE5A 3NSGA 4GCPA 4GCQA 2ZLDA 3POQA 5DL6A 1MPFA 3T0SA 4LSIA 1GFNA 1H6S1 2FGRA 3FYXA 1HXTA 4GCSA 7PRNA 2ZFGA 3SYSA 4FOZA 2XE2A 3PRNA 3UU2A 3VZTX 4C69X 1PRNA 4KR8A 3WI4A 1PHOA 1BH3A 4D65A 1BT9A 3T24A 3POXA 3T20A 1E54A 3EMNX 3K19A 2O4VA 3VZUX 2PORA 4RJWA 4D64A 1HXUA 2Y0LA 2ODJA 1GFPA 5FVNA 2OMFA
chains in the Genus database with same CATH superfamily
2MHLA 2PRNA 3A0HO 3JTYA 3LK3A 3HWBA 6PRNA 1THQA 2WJQA 3AA1B 3AA6B 3AA7A 3DA4A 3RBHA 3POUA 5JDPA 4G76A 3SZVA 3GP6A 4O3XB 2WJRA 4LSFA 5GTIO 4AYEC 5D5DA 5AFUK 3LK41 2Y2XA 3G7GA 4XNLA 2XE3A 2Y0KA 2XG6A 4UB8O 2IWVA 3DA3A 4FMSA 4BUMX 3AAAA 1GFOA 2Y0HA 3HW9A 3AA7B 3AA6A 4FRXA 5G3AA 4AYNA 2LFUA 4D5UA 5AFUL 8PRNA 3A2SX 4LSHA 3UAQA 4FT6A 2XE1A 4KR4A 2R88A 2KXPB 2N2MA 2ERVA 4LSEA 1T16A 2GE4A 3SZDA 4AYDC 2KZ7A 2M07A 3JCUO 5DL7A 2J1NA 3VY9X 4C4VA 1GFMA 3PORA 3UPGA 5DL5A 2YPVA 5T5FA 2R89A 1ZHTA 2F1CX 5PRNA 2WVPA 2X9KA 3QRAA 3SY9A 1G90A 4RLBA 3SY7A 5GTHO 2QTKA 4AKRA 5DL8A 5ADXK 2XTQA 1MM5A 4O4UA 1GFQA 4KRAA 3VE1A 2W80C 3WI5A 5KAIO 1ZHYA 3O0EA 2XMXA 4O3WA 4AUIA 1HXXA 2K4TA 4FSPA 3DZMA 4FUVA 4AYMC 3PQSA 4RJXA 3V8UA 4XNKA 4AKMA 1BXWA 4N59A 4FESA 4AKRB 1QJ9A 2R4OA 2AXTO 2M06A 2MNHA 4FSOA 2FGQX 4N58A 2R4NA 5KAFO 2YNKA 4E1TA 3SYBA 3VZWX 4AYID 3DWNA 2KZ7B 2J4UP 3PGSA 1IZNB 4FZLA 3AAEA 4FRTA 4JFBA 1OSMA 3HOLA 5EE2A 3VY8X 1OPFA 2XE5A 3NSGA 4GCPA 3TZGA 2KDYA 5TISO 4O3ZA 2X27X 1ORMA 3DWOX 4GCQA 1YS5A 2ZLDA 3POQA 4GHBA 3NJTA 4O4XA 5DL6A 3PGUA 4UB6O 3LK42 3PQUA 2JQYA 3AA0A 3C5OA 2XTRA 3BRYA 3BRZA 4E1SA 2LHFA 1MPFA 4RL9A 2N2LA 3QRCA 3T0SA 3AAEB 2KC0A 4LSIA 4F4BA 1GFNA 2IWWA 1ZHWA 2F1VA 5GV0A 1H6S1 2FGRA 3FYXA 4Z3TA 5H2FO 3HOEA 1HXTA 3LK2B 4GCSA 7PRNA 5G39A 2ZFGA 4FZMA 2Y7SA 3KZIO 3SYSA 3AA0B 2F1TA 4GF4A 4K3BA 4N74A 4G75A 4RLCA 1QJPA 5IYUA 4QQ1A 4FOZA 2XE2A 1IZNA 3PRNA 4U9CA 3UU2A 3VZTX 1Q9FA 4PUXA 4C69X 1PRNA 4KR8A 1ZHXA 3BS0A 1P4TA 5E79O 3AAAB 3WI4A 4AFKA 4N75A 3KVDD 1PHOA 3LK2A 1ZHZA 1BH3A 1T1LA 3PGRA 5FVNA 5ADXL 4B61A 2R4PA 4D65A 1MM4A 1BT9A 3T24A 5G38A 1QJ8A 2KXPA 3WU2O 3PF1A 3POXA 4C00A 2JMMA 3T20A 1E54A 3EMNX 3K19A 2O4VA 3VZUX 4JCHA 2PORA 3AA1A 2W81C 2R8AA 4O3YA 5B66O 4RJWA 2K0LA 4CTDA 4D64A 4AZLA 1Q9GA 3VE2A 5B5EO 1HXUA 4FZNA 2R4LA 2Y0LA 2ODJA 4C4VB 4IL6O 3A0BO 4O49A 1GFPA 1S5LO 3LK3B 4K3CA 4FQEA 5G26A 4PR7A 4PJ0O 2OMFA
chains in the Genus database with same CATH topology
2MHLA 2PRNA 3JTYA 3LK3A 3HWBA 6PRNA 1THQA 3AA1B 3AA6B 3AA7A 3DA4A 3RBHA 3POUA 5JDPA 4G76A 3SZVA 3GP6A 4O3XB 4LSFA 4AYEC 5D5DA 5AFUK 3LK41 2Y2XA 3G7GA 4XNLA 2XE3A 2Y0KA 2XG6A 3DA3A 4FMSA 4BUMX 3AAAA 1GFOA 2Y0HA 3HW9A 3AA7B 3AA6A 4FRXA 4AYNA 4D5UA 2LFUA 5AFUL 8PRNA 3A2SX 4LSHA 3UAQA 4FT6A 2XE1A 4KR4A 2KXPB 2N2MA 2ERVA 4LSEA 3SZDA 2GE4A 4AYDC 2KZ7A 2M07A 5DL7A 2J1NA 3VY9X 1GFMA 3PORA 3UPGA 5DL5A 2YPVA 5T5FA 1ZHTA 5PRNA 3QRAA 3SY9A 1G90A 4RLBA 3SY7A 2QTKA 4AKRA 5DL8A 5ADXK 2XTQA 1MM5A 4O4UA 1GFQA 4KRAA 3VE1A 2W80C 3WI5A 1ZHYA 3O0EA 2XMXA 4O3WA 4AUIA 1HXXA 2K4TA 4FSPA 4FUVA 4AYMC 3PQSA 4RJXA 3V8UA 4XNKA 4AKMA 1BXWA 4N59A 4FESA 4AKRB 1QJ9A 2M06A 2MNHA 4FSOA 2FGQX 4N58A 2YNKA 4E1TA 3SYBA 3VZWX 4AYID 2J4UP 2KZ7B 1IZNB 4FZLA 3AAEA 4FRTA 4JFBA 1OSMA 3HOLA 5EE2A 3VY8X 1OPFA 2XE5A 3NSGA 4GCPA 3TZGA 2KDYA 4O3ZA 2X27X 1ORMA 4GCQA 4GHBA 1YS5A 2ZLDA 3POQA 4O4XA 5DL6A 3LK42 3PQUA 3AA0A 3C5OA 2XTRA 4E1SA 2LHFA 1MPFA 4RL9A 2N2LA 3QRCA 3T0SA 3AAEB 2KC0A 4LSIA 4F4BA 1GFNA 1ZHWA 2F1VA 5GV0A 1H6S1 2FGRA 3FYXA 4Z3TA 3HOEA 1HXTA 3LK2B 4GCSA 7PRNA 2ZFGA 4FZMA 2Y7SA 3SYSA 3AA0B 2F1TA 4GF4A 4G75A 4RLCA 1QJPA 5IYUA 4QQ1A 4FOZA 2XE2A 1IZNA 3PRNA 4U9CA 3UU2A 3VZTX 1Q9FA 4PUXA 4C69X 1PRNA 4KR8A 1ZHXA 3WI4A 1P4TA 4AFKA 3AAAB 3KVDD 1PHOA 3LK2A 1ZHZA 1BH3A 5ADXL 4B61A 4D65A 1MM4A 1BT9A 3T24A 1QJ8A 2KXPA 3POXA 3T20A 2JMMA 1E54A 3EMNX 3K19A 2O4VA 3VZUX 4JCHA 2PORA 3AA1A 2W81C 4O3YA 4RJWA 2K0LA 4D64A 4AZLA 1Q9GA 3VE2A 1HXUA 4FZNA 2Y0LA 2ODJA 4O49A 1GFPA 3LK3B 5G26A 5FVNA 2OMFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PRN A;  3JTY A;  3HWB A;  6PRN A;  3POU A;  5JDP A;  3SZV A;  4LSF A;  2Y2X A;  2XE3 A;  2Y0K A;  2XG6 A;  4FMS A;  4BUM X;  1GFO A;  2Y0H A;  3HW9 A;  4FRX A;  4D5U A;  8PRN A;  3A2S X;  4LSH A;  4FT6 A;  2XE1 A;  4KR4 A;  4LSE A;  3SZD A;  5DL7 A;  2J1N A;  3VY9 X;  1GFM A;  3POR A;  3UPG A;  5DL5 A;  5PRN A;  3SY9 A;  3SY7 A;  2QTK A;  5DL8 A;  1GFQ A;  4KRA A;  3WI5 A;  3O0E A;  4AUI A;  1HXX A;  2K4T A;  4FSP A;  4RJX A;  4FSO A;  2FGQ X;  3SYB A;  3VZW X;  2J4U P;  4FRT A;  4JFB A;  1OSM A;  3VY8 X;  1OPF A;  2XE5 A;  3NSG A;  4GCP A;  4GCQ A;  2ZLD A;  3POQ A;  5DL6 A;  1MPF A;  3T0S A;  4LSI A;  1GFN A;  1H6S 1;  2FGR A;  3FYX A;  1HXT A;  4GCS A;  7PRN A;  2ZFG A;  3SYS A;  4FOZ A;  2XE2 A;  3PRN A;  3UU2 A;  3VZT X;  4C69 X;  1PRN A;  4KR8 A;  3WI4 A;  1PHO A;  1BH3 A;  4D65 A;  1BT9 A;  3T24 A;  3POX A;  3T20 A;  1E54 A;  3EMN X;  3K19 A;  2O4V A;  3VZU X;  2POR A;  4RJW A;  4D64 A;  1HXU A;  2Y0L A;  2ODJ A;  1GFP A;  5FVN A;  2OMF A; 
#chains in the Genus database with same CATH topology
 2MHL A;  2PRN A;  3A0H O;  3JTY A;  3LK3 A;  3HWB A;  6PRN A;  1THQ A;  2WJQ A;  3AA1 B;  3AA6 B;  3AA7 A;  3DA4 A;  3RBH A;  3POU A;  5JDP A;  4G76 A;  3SZV A;  3GP6 A;  4O3X B;  2WJR A;  4LSF A;  5GTI O;  4AYE C;  5D5D A;  5AFU K;  3LK4 1;  2Y2X A;  3G7G A;  4XNL A;  2XE3 A;  2Y0K A;  2XG6 A;  4UB8 O;  2IWV A;  3DA3 A;  4FMS A;  4BUM X;  3AAA A;  1GFO A;  2Y0H A;  3HW9 A;  3AA7 B;  3AA6 A;  4FRX A;  5G3A A;  4AYN A;  2LFU A;  4D5U A;  5AFU L;  8PRN A;  3A2S X;  4LSH A;  3UAQ A;  4FT6 A;  2XE1 A;  4KR4 A;  2R88 A;  2KXP B;  2N2M A;  2ERV A;  4LSE A;  1T16 A;  2GE4 A;  3SZD A;  4AYD C;  2KZ7 A;  2M07 A;  3JCU O;  5DL7 A;  2J1N A;  3VY9 X;  4C4V A;  1GFM A;  3POR A;  3UPG A;  5DL5 A;  2YPV A;  5T5F A;  2R89 A;  1ZHT A;  2F1C X;  5PRN A;  2WVP A;  2X9K A;  3QRA A;  3SY9 A;  1G90 A;  4RLB A;  3SY7 A;  5GTH O;  2QTK A;  4AKR A;  5DL8 A;  5ADX K;  2XTQ A;  1MM5 A;  4O4U A;  1GFQ A;  4KRA A;  3VE1 A;  2W80 C;  3WI5 A;  5KAI O;  1ZHY A;  3O0E A;  2XMX A;  4O3W A;  4AUI A;  1HXX A;  2K4T A;  4FSP A;  3DZM A;  4FUV A;  4AYM C;  3PQS A;  4RJX A;  3V8U A;  4XNK A;  4AKM A;  1BXW A;  4N59 A;  4FES A;  4AKR B;  1QJ9 A;  2R4O A;  2AXT O;  2M06 A;  2MNH A;  4FSO A;  2FGQ X;  4N58 A;  2R4N A;  5KAF O;  2YNK A;  4E1T A;  3SYB A;  3VZW X;  4AYI D;  3DWN A;  2KZ7 B;  2J4U P;  3PGS A;  1IZN B;  4FZL A;  3AAE A;  4FRT A;  4JFB A;  1OSM A;  3HOL A;  5EE2 A;  3VY8 X;  1OPF A;  2XE5 A;  3NSG A;  4GCP A;  3TZG A;  2KDY A;  5TIS O;  4O3Z A;  2X27 X;  1ORM A;  3DWO X;  4GCQ A;  1YS5 A;  2ZLD A;  3POQ A;  4GHB A;  3NJT A;  4O4X A;  5DL6 A;  3PGU A;  4UB6 O;  3LK4 2;  3PQU A;  2JQY A;  3AA0 A;  3C5O A;  2XTR A;  3BRY A;  3BRZ A;  4E1S A;  2LHF A;  1MPF A;  4RL9 A;  2N2L A;  3QRC A;  3T0S A;  3AAE B;  2KC0 A;  4LSI A;  4F4B A;  1GFN A;  2IWW A;  1ZHW A;  2F1V A;  5GV0 A;  1H6S 1;  2FGR A;  3FYX A;  4Z3T A;  5H2F O;  3HOE A;  1HXT A;  3LK2 B;  4GCS A;  7PRN A;  5G39 A;  2ZFG A;  4FZM A;  2Y7S A;  3KZI O;  3SYS A;  3AA0 B;  2F1T A;  4GF4 A;  4K3B A;  4N74 A;  4G75 A;  4RLC A;  1QJP A;  5IYU A;  4QQ1 A;  4FOZ A;  2XE2 A;  1IZN A;  3PRN A;  4U9C A;  3UU2 A;  3VZT X;  1Q9F A;  4PUX A;  4C69 X;  1PRN A;  4KR8 A;  1ZHX A;  3BS0 A;  1P4T A;  5E79 O;  3AAA B;  3WI4 A;  4AFK A;  4N75 A;  3KVD D;  1PHO A;  3LK2 A;  1ZHZ A;  1BH3 A;  1T1L A;  3PGR A;  5FVN A;  5ADX L;  4B61 A;  2R4P A;  4D65 A;  1MM4 A;  1BT9 A;  3T24 A;  5G38 A;  1QJ8 A;  2KXP A;  3WU2 O;  3PF1 A;  3POX A;  4C00 A;  2JMM A;  3T20 A;  1E54 A;  3EMN X;  3K19 A;  2O4V A;  3VZU X;  4JCH A;  2POR A;  3AA1 A;  2W81 C;  2R8A A;  4O3Y A;  5B66 O;  4RJW A;  2K0L A;  4CTD A;  4D64 A;  4AZL A;  1Q9G A;  3VE2 A;  5B5E O;  1HXU A;  4FZN A;  2R4L A;  2Y0L A;  2ODJ A;  4C4V B;  4IL6 O;  3A0B O;  4O49 A;  1GFP A;  1S5L O;  3LK3 B;  4K3C A;  4FQE A;  5G26 A;  4PR7 A;  4PJ0 O;  2OMF A; 
#chains in the Genus database with same CATH homology
 2MHL A;  2PRN A;  3JTY A;  3LK3 A;  3HWB A;  6PRN A;  1THQ A;  3AA1 B;  3AA6 B;  3AA7 A;  3DA4 A;  3RBH A;  3POU A;  5JDP A;  4G76 A;  3SZV A;  3GP6 A;  4O3X B;  4LSF A;  4AYE C;  5D5D A;  5AFU K;  3LK4 1;  2Y2X A;  3G7G A;  4XNL A;  2XE3 A;  2Y0K A;  2XG6 A;  3DA3 A;  4FMS A;  4BUM X;  3AAA A;  1GFO A;  2Y0H A;  3HW9 A;  3AA7 B;  3AA6 A;  4FRX A;  4AYN A;  4D5U A;  2LFU A;  5AFU L;  8PRN A;  3A2S X;  4LSH A;  3UAQ A;  4FT6 A;  2XE1 A;  4KR4 A;  2KXP B;  2N2M A;  2ERV A;  4LSE A;  3SZD A;  2GE4 A;  4AYD C;  2KZ7 A;  2M07 A;  5DL7 A;  2J1N A;  3VY9 X;  1GFM A;  3POR A;  3UPG A;  5DL5 A;  2YPV A;  5T5F A;  1ZHT A;  5PRN A;  3QRA A;  3SY9 A;  1G90 A;  4RLB A;  3SY7 A;  2QTK A;  4AKR A;  5DL8 A;  5ADX K;  2XTQ A;  1MM5 A;  4O4U A;  1GFQ A;  4KRA A;  3VE1 A;  2W80 C;  3WI5 A;  1ZHY A;  3O0E A;  2XMX A;  4O3W A;  4AUI A;  1HXX A;  2K4T A;  4FSP A;  4FUV A;  4AYM C;  3PQS A;  4RJX A;  3V8U A;  4XNK A;  4AKM A;  1BXW A;  4N59 A;  4FES A;  4AKR B;  1QJ9 A;  2M06 A;  2MNH A;  4FSO A;  2FGQ X;  4N58 A;  2YNK A;  4E1T A;  3SYB A;  3VZW X;  4AYI D;  2J4U P;  2KZ7 B;  1IZN B;  4FZL A;  3AAE A;  4FRT A;  4JFB A;  1OSM A;  3HOL A;  5EE2 A;  3VY8 X;  1OPF A;  2XE5 A;  3NSG A;  4GCP A;  3TZG A;  2KDY A;  4O3Z A;  2X27 X;  1ORM A;  4GCQ A;  4GHB A;  1YS5 A;  2ZLD A;  3POQ A;  4O4X A;  5DL6 A;  3LK4 2;  3PQU A;  3AA0 A;  3C5O A;  2XTR A;  4E1S A;  2LHF A;  1MPF A;  4RL9 A;  2N2L A;  3QRC A;  3T0S A;  3AAE B;  2KC0 A;  4LSI A;  4F4B A;  1GFN A;  1ZHW A;  2F1V A;  5GV0 A;  1H6S 1;  2FGR A;  3FYX A;  4Z3T A;  3HOE A;  1HXT A;  3LK2 B;  4GCS A;  7PRN A;  2ZFG A;  4FZM A;  2Y7S A;  3SYS A;  3AA0 B;  2F1T A;  4GF4 A;  4G75 A;  4RLC A;  1QJP A;  5IYU A;  4QQ1 A;  4FOZ A;  2XE2 A;  1IZN A;  3PRN A;  4U9C A;  3UU2 A;  3VZT X;  1Q9F A;  4PUX A;  4C69 X;  1PRN A;  4KR8 A;  1ZHX A;  3WI4 A;  1P4T A;  4AFK A;  3AAA B;  3KVD D;  1PHO A;  3LK2 A;  1ZHZ A;  1BH3 A;  5ADX L;  4B61 A;  4D65 A;  1MM4 A;  1BT9 A;  3T24 A;  1QJ8 A;  2KXP A;  3POX A;  3T20 A;  2JMM A;  1E54 A;  3EMN X;  3K19 A;  2O4V A;  3VZU X;  4JCH A;  2POR A;  3AA1 A;  2W81 C;  4O3Y A;  4RJW A;  2K0L A;  4D64 A;  4AZL A;  1Q9G A;  3VE2 A;  1HXU A;  4FZN A;  2Y0L A;  2ODJ A;  4O49 A;  1GFP A;  3LK3 B;  5G26 A;  5FVN A;  2OMF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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