4FSOA

Crystal structure of pseudomonas aeruginosa occk10 (opdn)
Total Genus 86
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
397
structure length
354
Chain Sequence
EDGSARLEARTVYFNRDFKREEAAQGFILDLRSGYTEGALGFGVDTLAMLGIQYAKAGVAGKMRFSQTQFRYGAMLPDMPLLKYNDGRLLPTLFHGAQLTSEEIAGLRFSATRLERYTAAQDIRLHCKNKRYACDTTGNRFDAYQLDYQVNDGLLLQYAQGGLRNVYRQRYLGAVGKRQVGAGKLSADLRWFDSEDAGAARAGKIDNRALSLLLAYAQGGHTLSAGWQRMNGASSMPYLDGSNPYLANYLQVNDFANPEERSWQLRYDFDLRSVGVPGLSFMTRYVNGDHIRLANGDEGKEWERDIELKYIVQSGRFKDLSLRLRNATYRTDFERSARDVDEVRLIASYNLSLF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal Structures of OccK Subfamily Proteins
rcsb
source organism Pseudomonas aeruginosa
molecule tags Transport protein
molecule keywords Probable porin
total genus 86
structure length 354
sequence length 397
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4fsoA01
3K19A 5DL8A 3POXA 3VY8X 3EMNX 2Y0HA 2PORA 2Y2XA 3SZDA 4FSOA 1H6S1 4KRAA 3SYSA 3SY9A 2O4VA 3POQA 5DL6A 1HXXA 3PRNA 5PRNA 4BUMX 1GFPA 4RJXA 3PORA 3HW9A 4D5UA 3FYXA 2Y0KA 4FRXA 4LSIA 3POUA 4LSHA 2PRNA 4FOZA 3VZTX 2XE2A 3SY7A 8PRNA 4RJWA 1BH3A 3WI5A 1GFNA 4FRTA 2J4UP 2XG6A 3VZWX 4FSPA 4GCPA 4FT6A 4LSFA 2ZFGA 3T20A 6PRNA 3SYBA 1HXTA 5FVNA 4AUIA 4GCQA 3O0EA 3T0SA 2ZLDA 4LSEA 3JTYA 1MPFA 4D65A 2FGQX 3T24A 4C69X 1GFQA 2QTKA 5DL5A 1GFMA 2Y0LA 1E54A 4KR8A 5JDPA 3VY9X 3UU2A 2XE1A 3WI4A 5DL7A 1OPFA 4FMSA 4JFBA 4KR4A 3HWBA 1GFOA 2XE5A 3SZVA 2ODJA 3NSGA 1OSMA 4D64A 2K4TA 4GCSA 1HXUA 2J1NA 1BT9A 2FGRA 7PRNA 1PRNA 2XE3A 3A2SX 1PHOA 2OMFA 3VZUX 3UPGA
chains in the Genus database with same CATH superfamily
3K19A 4AKRB 5AFUL 3AA1B 3AA6A 5DL8A 3POXA 3VY8X 3EMNX 3BRZA 5B66O 4FUVA 2Y0HA 3AA1A 2W81C 3AA6B 4K3BA 3AAEB 2PORA 2Y2XA 5ADXL 3SZDA 4FSOA 1ZHXA 1H6S1 1QJ8A 4KRAA 4PUXA 3DA3A 2F1CX 3SYSA 3SY9A 2IWWA 3DWNA 4N58A 2O4VA 4O3ZA 2IWVA 3AA7A 3POQA 1HXXA 1Q9GA 3PRNA 5DL6A 1GFPA 4O49A 4RJXA 2X9KA 3HW9A 3PORA 5PRNA 4D5UA 3VE2A 4FESA 5E79O 4O4XA 3FYXA 2K0LA 2Y0KA 1ZHTA 3HOLA 4FRXA 4CTDA 2M06A 5D5DA 4XNLA 4LSIA 2LFUA 3JCUO 4O4UA 3POUA 2AXTO 3DWOX 1S5LO 3AAAA 4GHBA 5GTIO 2Y7SA 4UB6O 4LSHA 5KAFO 2PRNA 2R8AA 4FOZA 3VZTX 4G76A 3AA0A 1T1LA 2XE2A 4FQEA 3SY7A 8PRNA 5T5FA 4AFKA 4RJWA 1BH3A 3G7GA 4E1SA 3C5OA 2GE4A 4BUMX 1YS5A 4O3XB 5G38A 3WI5A 1GFNA 4FRTA 2J4UP 4O3WA 2XG6A 4UB8O 3VZWX 3PGSA 2WJRA 4FSPA 4GCPA 4AYNA 3RBHA 4FT6A 4AZLA 2MHLA 4LSFA 3V8UA 2ZFGA 3T20A 6PRNA 1IZNB 3SYBA 1HXTA 4PR7A 4U9CA 5G39A 5FVNA 5KAIO 4AYMC 1P4TA 4AUIA 5ADXK 1ZHWA 4GCQA 3LK3B 2R4LA 4AYID 3O0EA 3T0SA 2KXPB 3WU2O 2N2LA 2R89A 2R4OA 2ZLDA 4LSEA 4C00A 2MNHA 1MPFA 2XMXA 3JTYA 3NJTA 1QJ9A 2WVPA 4FZMA 4D65A 3TZGA 2ERVA 2W80C 3BS0A 2FGQX 3PGRA 3T24A 4AKRA 4O3YA 1G90A 3KZIO 3PGUA 5H2FO 2R88A 3AAEA 3LK42 4C69X 4Z3TA 2F1TA 1GFQA 4C4VA 2QTKA 4E1TA 3HOEA 2JQYA 1BXWA 2KC0A 3AA7B 1ZHZA 4RL9A 5DL5A 3BRYA 5EE2A 1GFMA 3DZMA 4C4VB 5AFUK 2N2MA 2Y0LA 1E54A 3UAQA 4KR8A 4FZNA 5TISO 5JDPA 3VY9X 5G3AA 3PQSA 3UU2A 4N75A 4N74A 2KDYA 2XE1A 3WI4A 3A0HO 5GV0A 5DL7A 5G26A 1OPFA 4FMSA 4IL6O 2YPVA 3DA4A 1Q9FA 2XTRA 4PJ0O 4JFBA 2F1VA 4KR4A 5B5EO 2JMMA 3AA0B 3HWBA 1GFOA 1MM4A 3AAAB 2XE5A 3SZVA 3VE1A 5GTHO 2ODJA 2YNKA 3NSGA 4FZLA 4JCHA 3PF1A 1OSMA 2XTQA 1THQA 4D64A 3GP6A 4B61A 4GF4A 4F4BA 2K4TA 4K3CA 2X27X 2M07A 4GCSA 4AYEC 2R4PA 1T16A 1HXUA 2J1NA 2WJQA 4RLBA 2R4NA 1BT9A 2FGRA 4AYDC 5IYUA 7PRNA 3PQUA 4N59A 2LHFA 3QRCA 1IZNA 1PRNA 2XE3A 3KVDD 4G75A 4QQ1A 3LK2B 3A0BO 4RLCA 1MM5A 1QJPA 3A2SX 3QRAA 1PHOA 3LK3A 1ZHYA 3LK2A 2KZ7B 4AKMA 2OMFA 3LK41 2KXPA 4XNKA 3VZUX 3UPGA 2KZ7A 1ORMA
chains in the Genus database with same CATH topology
3K19A 4AKRB 5AFUL 3AA1B 3AA6A 5DL8A 3POXA 3VY8X 3EMNX 4FUVA 2Y0HA 3AA1A 2W81C 3AA6B 3AAEB 2PORA 2Y2XA 5ADXL 3SZDA 4FSOA 1ZHXA 1H6S1 1QJ8A 4KRAA 4PUXA 3DA3A 3SYSA 3SY9A 4N58A 2O4VA 4O3ZA 3POQA 3AA7A 5DL6A 1HXXA 1Q9GA 3PRNA 5PRNA 1GFPA 4O49A 4RJXA 3PORA 3HW9A 4BUMX 4D5UA 3VE2A 4FESA 4O4XA 3FYXA 2K0LA 2Y0KA 1ZHTA 3HOLA 4FRXA 2M06A 5D5DA 4XNLA 4LSIA 2LFUA 4O4UA 3POUA 4GHBA 3AAAA 2Y7SA 4LSHA 2PRNA 4FOZA 3VZTX 4G76A 3AA0A 2XE2A 3SY7A 8PRNA 5T5FA 4AFKA 4RJWA 1BH3A 3G7GA 4E1SA 3C5OA 2GE4A 1YS5A 4O3XB 3WI5A 1GFNA 4FRTA 2J4UP 4O3WA 2XG6A 3VZWX 4FSPA 4GCPA 4AYNA 3RBHA 4FT6A 4AZLA 2MHLA 4LSFA 3V8UA 2ZFGA 3T20A 6PRNA 1IZNB 3SYBA 1HXTA 4U9CA 4AYMC 5FVNA 1P4TA 4AUIA 5ADXK 1ZHWA 4GCQA 3LK3B 4AYID 3O0EA 3T0SA 2KXPB 2N2LA 2ZLDA 4LSEA 2MNHA 1MPFA 2XMXA 3JTYA 1QJ9A 4FZMA 4D65A 3TZGA 2ERVA 2W80C 2FGQX 4AKRA 3T24A 4O3YA 1G90A 3AAEA 3LK42 4C69X 4Z3TA 2F1TA 1GFQA 2QTKA 4E1TA 3HOEA 5EE2A 1BXWA 2KC0A 3AA7B 1ZHZA 4RL9A 5DL5A 5AFUK 1GFMA 2N2MA 2Y0LA 1E54A 3UAQA 4KR8A 4FZNA 5JDPA 3VY9X 3PQSA 3UU2A 2KDYA 2XE1A 3WI4A 5GV0A 5DL7A 5G26A 1OPFA 4FMSA 2YPVA 3DA4A 1Q9FA 2XTRA 4JFBA 2F1VA 4KR4A 2JMMA 3AA0B 3HWBA 1GFOA 1MM4A 3AAAB 2XE5A 3SZVA 3VE1A 2ODJA 2YNKA 3NSGA 4FZLA 4JCHA 1OSMA 2XTQA 1THQA 4D64A 3GP6A 4B61A 4GF4A 4F4BA 2K4TA 2X27X 2M07A 4GCSA 4AYEC 4RLBA 1HXUA 2J1NA 1BT9A 2FGRA 4AYDC 5IYUA 7PRNA 3PQUA 4N59A 2LHFA 3QRCA 1IZNA 1PRNA 2XE3A 3KVDD 4G75A 4QQ1A 3LK2B 4RLCA 1MM5A 1QJPA 3A2SX 3QRAA 1PHOA 3LK3A 1ZHYA 3LK2A 2KZ7B 4AKMA 2OMFA 3LK41 2KXPA 4XNKA 3VZUX 3UPGA 2KZ7A 1ORMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K19 A;  5DL8 A;  3POX A;  3VY8 X;  3EMN X;  2Y0H A;  2POR A;  2Y2X A;  3SZD A;  4FSO A;  1H6S 1;  4KRA A;  3SYS A;  3SY9 A;  2O4V A;  3POQ A;  5DL6 A;  1HXX A;  3PRN A;  5PRN A;  4BUM X;  1GFP A;  4RJX A;  3POR A;  3HW9 A;  4D5U A;  3FYX A;  2Y0K A;  4FRX A;  4LSI A;  3POU A;  4LSH A;  2PRN A;  4FOZ A;  3VZT X;  2XE2 A;  3SY7 A;  8PRN A;  4RJW A;  1BH3 A;  3WI5 A;  1GFN A;  4FRT A;  2J4U P;  2XG6 A;  3VZW X;  4FSP A;  4GCP A;  4FT6 A;  4LSF A;  2ZFG A;  3T20 A;  6PRN A;  3SYB A;  1HXT A;  5FVN A;  4AUI A;  4GCQ A;  3O0E A;  3T0S A;  2ZLD A;  4LSE A;  3JTY A;  1MPF A;  4D65 A;  2FGQ X;  3T24 A;  4C69 X;  1GFQ A;  2QTK A;  5DL5 A;  1GFM A;  2Y0L A;  1E54 A;  4KR8 A;  5JDP A;  3VY9 X;  3UU2 A;  2XE1 A;  3WI4 A;  5DL7 A;  1OPF A;  4FMS A;  4JFB A;  4KR4 A;  3HWB A;  1GFO A;  2XE5 A;  3SZV A;  2ODJ A;  3NSG A;  1OSM A;  4D64 A;  2K4T A;  4GCS A;  1HXU A;  2J1N A;  1BT9 A;  2FGR A;  7PRN A;  1PRN A;  2XE3 A;  3A2S X;  1PHO A;  2OMF A;  3VZU X;  3UPG A; 
#chains in the Genus database with same CATH topology
 3K19 A;  4AKR B;  5AFU L;  3AA1 B;  3AA6 A;  5DL8 A;  3POX A;  3VY8 X;  3EMN X;  3BRZ A;  5B66 O;  4FUV A;  2Y0H A;  3AA1 A;  2W81 C;  3AA6 B;  4K3B A;  3AAE B;  2POR A;  2Y2X A;  5ADX L;  3SZD A;  4FSO A;  1ZHX A;  1H6S 1;  1QJ8 A;  4KRA A;  4PUX A;  3DA3 A;  2F1C X;  3SYS A;  3SY9 A;  2IWW A;  3DWN A;  4N58 A;  2O4V A;  4O3Z A;  2IWV A;  3AA7 A;  3POQ A;  1HXX A;  1Q9G A;  3PRN A;  5DL6 A;  1GFP A;  4O49 A;  4RJX A;  2X9K A;  3HW9 A;  3POR A;  5PRN A;  4D5U A;  3VE2 A;  4FES A;  5E79 O;  4O4X A;  3FYX A;  2K0L A;  2Y0K A;  1ZHT A;  3HOL A;  4FRX A;  4CTD A;  2M06 A;  5D5D A;  4XNL A;  4LSI A;  2LFU A;  3JCU O;  4O4U A;  3POU A;  2AXT O;  3DWO X;  1S5L O;  3AAA A;  4GHB A;  5GTI O;  2Y7S A;  4UB6 O;  4LSH A;  5KAF O;  2PRN A;  2R8A A;  4FOZ A;  3VZT X;  4G76 A;  3AA0 A;  1T1L A;  2XE2 A;  4FQE A;  3SY7 A;  8PRN A;  5T5F A;  4AFK A;  4RJW A;  1BH3 A;  3G7G A;  4E1S A;  3C5O A;  2GE4 A;  4BUM X;  1YS5 A;  4O3X B;  5G38 A;  3WI5 A;  1GFN A;  4FRT A;  2J4U P;  4O3W A;  2XG6 A;  4UB8 O;  3VZW X;  3PGS A;  2WJR A;  4FSP A;  4GCP A;  4AYN A;  3RBH A;  4FT6 A;  4AZL A;  2MHL A;  4LSF A;  3V8U A;  2ZFG A;  3T20 A;  6PRN A;  1IZN B;  3SYB A;  1HXT A;  4PR7 A;  4U9C A;  5G39 A;  5FVN A;  5KAI O;  4AYM C;  1P4T A;  4AUI A;  5ADX K;  1ZHW A;  4GCQ A;  3LK3 B;  2R4L A;  4AYI D;  3O0E A;  3T0S A;  2KXP B;  3WU2 O;  2N2L A;  2R89 A;  2R4O A;  2ZLD A;  4LSE A;  4C00 A;  2MNH A;  1MPF A;  2XMX A;  3JTY A;  3NJT A;  1QJ9 A;  2WVP A;  4FZM A;  4D65 A;  3TZG A;  2ERV A;  2W80 C;  3BS0 A;  2FGQ X;  3PGR A;  3T24 A;  4AKR A;  4O3Y A;  1G90 A;  3KZI O;  3PGU A;  5H2F O;  2R88 A;  3AAE A;  3LK4 2;  4C69 X;  4Z3T A;  2F1T A;  1GFQ A;  4C4V A;  2QTK A;  4E1T A;  3HOE A;  2JQY A;  1BXW A;  2KC0 A;  3AA7 B;  1ZHZ A;  4RL9 A;  5DL5 A;  3BRY A;  5EE2 A;  1GFM A;  3DZM A;  4C4V B;  5AFU K;  2N2M A;  2Y0L A;  1E54 A;  3UAQ A;  4KR8 A;  4FZN A;  5TIS O;  5JDP A;  3VY9 X;  5G3A A;  3PQS A;  3UU2 A;  4N75 A;  4N74 A;  2KDY A;  2XE1 A;  3WI4 A;  3A0H O;  5GV0 A;  5DL7 A;  5G26 A;  1OPF A;  4FMS A;  4IL6 O;  2YPV A;  3DA4 A;  1Q9F A;  2XTR A;  4PJ0 O;  4JFB A;  2F1V A;  4KR4 A;  5B5E O;  2JMM A;  3AA0 B;  3HWB A;  1GFO A;  1MM4 A;  3AAA B;  2XE5 A;  3SZV A;  3VE1 A;  5GTH O;  2ODJ A;  2YNK A;  3NSG A;  4FZL A;  4JCH A;  3PF1 A;  1OSM A;  2XTQ A;  1THQ A;  4D64 A;  3GP6 A;  4B61 A;  4GF4 A;  4F4B A;  2K4T A;  4K3C A;  2X27 X;  2M07 A;  4GCS A;  4AYE C;  2R4P A;  1T16 A;  1HXU A;  2J1N A;  2WJQ A;  4RLB A;  2R4N A;  1BT9 A;  2FGR A;  4AYD C;  5IYU A;  7PRN A;  3PQU A;  4N59 A;  2LHF A;  3QRC A;  1IZN A;  1PRN A;  2XE3 A;  3KVD D;  4G75 A;  4QQ1 A;  3LK2 B;  3A0B O;  4RLC A;  1MM5 A;  1QJP A;  3A2S X;  3QRA A;  1PHO A;  3LK3 A;  1ZHY A;  3LK2 A;  2KZ7 B;  4AKM A;  2OMF A;  3LK4 1;  2KXP A;  4XNK A;  3VZU X;  3UPG A;  2KZ7 A;  1ORM A; 
#chains in the Genus database with same CATH homology
 3K19 A;  4AKR B;  5AFU L;  3AA1 B;  3AA6 A;  5DL8 A;  3POX A;  3VY8 X;  3EMN X;  4FUV A;  2Y0H A;  3AA1 A;  2W81 C;  3AA6 B;  3AAE B;  2POR A;  2Y2X A;  5ADX L;  3SZD A;  4FSO A;  1ZHX A;  1H6S 1;  1QJ8 A;  4KRA A;  4PUX A;  3DA3 A;  3SYS A;  3SY9 A;  4N58 A;  2O4V A;  4O3Z A;  3POQ A;  3AA7 A;  5DL6 A;  1HXX A;  1Q9G A;  3PRN A;  5PRN A;  1GFP A;  4O49 A;  4RJX A;  3POR A;  3HW9 A;  4BUM X;  4D5U A;  3VE2 A;  4FES A;  4O4X A;  3FYX A;  2K0L A;  2Y0K A;  1ZHT A;  3HOL A;  4FRX A;  2M06 A;  5D5D A;  4XNL A;  4LSI A;  2LFU A;  4O4U A;  3POU A;  4GHB A;  3AAA A;  2Y7S A;  4LSH A;  2PRN A;  4FOZ A;  3VZT X;  4G76 A;  3AA0 A;  2XE2 A;  3SY7 A;  8PRN A;  5T5F A;  4AFK A;  4RJW A;  1BH3 A;  3G7G A;  4E1S A;  3C5O A;  2GE4 A;  1YS5 A;  4O3X B;  3WI5 A;  1GFN A;  4FRT A;  2J4U P;  4O3W A;  2XG6 A;  3VZW X;  4FSP A;  4GCP A;  4AYN A;  3RBH A;  4FT6 A;  4AZL A;  2MHL A;  4LSF A;  3V8U A;  2ZFG A;  3T20 A;  6PRN A;  1IZN B;  3SYB A;  1HXT A;  4U9C A;  4AYM C;  5FVN A;  1P4T A;  4AUI A;  5ADX K;  1ZHW A;  4GCQ A;  3LK3 B;  4AYI D;  3O0E A;  3T0S A;  2KXP B;  2N2L A;  2ZLD A;  4LSE A;  2MNH A;  1MPF A;  2XMX A;  3JTY A;  1QJ9 A;  4FZM A;  4D65 A;  3TZG A;  2ERV A;  2W80 C;  2FGQ X;  4AKR A;  3T24 A;  4O3Y A;  1G90 A;  3AAE A;  3LK4 2;  4C69 X;  4Z3T A;  2F1T A;  1GFQ A;  2QTK A;  4E1T A;  3HOE A;  5EE2 A;  1BXW A;  2KC0 A;  3AA7 B;  1ZHZ A;  4RL9 A;  5DL5 A;  5AFU K;  1GFM A;  2N2M A;  2Y0L A;  1E54 A;  3UAQ A;  4KR8 A;  4FZN A;  5JDP A;  3VY9 X;  3PQS A;  3UU2 A;  2KDY A;  2XE1 A;  3WI4 A;  5GV0 A;  5DL7 A;  5G26 A;  1OPF A;  4FMS A;  2YPV A;  3DA4 A;  1Q9F A;  2XTR A;  4JFB A;  2F1V A;  4KR4 A;  2JMM A;  3AA0 B;  3HWB A;  1GFO A;  1MM4 A;  3AAA B;  2XE5 A;  3SZV A;  3VE1 A;  2ODJ A;  2YNK A;  3NSG A;  4FZL A;  4JCH A;  1OSM A;  2XTQ A;  1THQ A;  4D64 A;  3GP6 A;  4B61 A;  4GF4 A;  4F4B A;  2K4T A;  2X27 X;  2M07 A;  4GCS A;  4AYE C;  4RLB A;  1HXU A;  2J1N A;  1BT9 A;  2FGR A;  4AYD C;  5IYU A;  7PRN A;  3PQU A;  4N59 A;  2LHF A;  3QRC A;  1IZN A;  1PRN A;  2XE3 A;  3KVD D;  4G75 A;  4QQ1 A;  3LK2 B;  4RLC A;  1MM5 A;  1QJP A;  3A2S X;  3QRA A;  1PHO A;  3LK3 A;  1ZHY A;  3LK2 A;  2KZ7 B;  4AKM A;  2OMF A;  3LK4 1;  2KXP A;  4XNK A;  3VZU X;  3UPG A;  2KZ7 A;  1ORM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...