5DL5A

Crystal structure of acinetobacter baumannii occab1
Total Genus 120
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
120
sequence length
416
structure length
416
Chain Sequence
ESEQSEAKGFVEDANGSILFRTGYLTRDKKQGAKDTSSVAQSAIVSIESGFTPGIVGFGVGVVGDGSFKIGENKNAGNQMIPKHNDGSAYDHWARGGGSVKARFSNTTVRYGTQVLDLPVLASNTGRMVPEYFTGTLLTSHEIKNLEVVAGKFTKDQMSDQINTDADASGRGLDRAIVWGAKYKFNDNLNASYYGLDSKNALERHYANVNFKQPLANDSSLTYDFSGYHTKFDANAHTYSATGTVAPNYAADGIAGEEKTNNIWAISGTYATGPHSVMLAYQQNTGNVGYDYGQNADGFQSIYLPNSYMSDFIGNHEKSAQIQYNVDFGKLGVLPGLNWTTAFVYGWDIKVRNVTDDAQEREFFNQVKYTVQSGFAKDASLRIRNSYYRASDAYQGAYIGDTNEWRIFLDIPVKLF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Membrane protein
publication title Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
pubmed doi rcsb
source organism Acinetobacter baumannii ab307-0294
molecule tags Membrane protein
total genus 120
structure length 416
sequence length 416
ec nomenclature
pdb deposition date 2015-09-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 5dl5A00
2FGQX 4LSEA 5DL5A 4GCSA 3UPGA 3SZVA 3WI4A 1PRNA 4BUMX 2PRNA 3VZUX 4FRTA 3SY9A 3SYSA 1HXUA 4KR4A 4FOZA 3T20A 3T24A 3A2SX 1PHOA 2Y2XA 3WI5A 4FT6A 1GFPA 4GCPA 4KRAA 1GFNA 4FRXA 3O0EA 2XE1A 2PORA 2XE5A 5PRNA 4LSIA 1GFMA 1BH3A 3EMNX 5DL8A 1BT9A 3SY7A 4LSFA 2OMFA 4FMSA 2XG6A 4C69X 3NSGA 4KR8A 2J4UP 4D65A 3POUA 3VZTX 5FVNA 1OPFA 2Y0KA 3FYXA 4AUIA 6PRNA 2ODJA 1HXTA 2K4TA 2Y0LA 4LSHA 3K19A 3T0SA 2O4VA 2J1NA 1E54A 1GFQA 4GCQA 3HW9A 3VZWX 4FSOA 2XE2A 5DL7A 1H6S1 3SZDA 2XE3A 3UU2A 3PRNA 3VY8X 3HWBA 4FSPA 3POQA 3SYBA 4RJXA 4D64A 4RJWA 2ZFGA 1OSMA 4JFBA 7PRNA 1HXXA 2QTKA 5JDPA 3POXA 2FGRA 8PRNA 1MPFA 3VY9X 2ZLDA 3PORA 4D5UA 2Y0HA 1GFOA 3JTYA 5DL6A
chains in the Genus database with same CATH superfamily
2FGQX 2R89A 2XMXA 1ZHWA 3DZMA 3PQSA 4GCSA 4LSEA 1ORMA 2R4PA 4O3YA 5DL5A 3SZVA 3WI4A 5AFUK 3UPGA 1PRNA 4BUMX 2PRNA 3AA1A 4AKRB 4E1TA 3VZUX 3AA1B 2N2MA 4FZNA 4FRTA 3BRYA 4G75A 3SY9A 5GTHO 1QJPA 1ZHZA 2MHLA 3KZIO 2IWWA 2GE4A 4IL6O 5T5FA 1Q9GA 3WU2O 3KVDD 3PGUA 3SYSA 4FUVA 1MM4A 4K3CA 1HXUA 3GP6A 4KR4A 3V8UA 2W81C 4UB8O 5KAFO 4FOZA 4B61A 3T20A 3LK42 3AA7A 3T24A 3A2SX 3AA7B 4RL9A 2ERVA 2K0LA 4AYDC 2X9KA 2R88A 1PHOA 2Y2XA 4RLBA 3WI5A 4AZLA 4FQEA 4FT6A 3PQUA 1GFPA 5B66O 5ADXK 4GCPA 3G7GA 4KRAA 4PUXA 1GFNA 4FRXA 4K3BA 5G38A 3O0EA 4N59A 3UAQA 4O3ZA 2XE1A 4CTDA 5GTIO 4AYID 2KXPA 2PORA 4C4VA 2KXPB 2XE5A 5PRNA 4C4VB 3HOEA 1Q9FA 3VE1A 5IYUA 5TISO 2XTRA 3PGRA 3TZGA 2WJQA 4LSIA 4FZMA 4N75A 4XNKA 4C00A 5AFUL 1GFMA 1BH3A 3EMNX 5DL8A 1BT9A 3SY7A 3VE2A 3DA3A 2X27X 1QJ9A 4O3WA 2JQYA 3AA0A 2OMFA 4LSFA 4AYMC 3AA0B 4JCHA 4FMSA 3C5OA 2XG6A 2YNKA 4U9CA 3NSGA 4XNLA 4KR8A 4AYEC 2R4NA 3RBHA 4C69X 4Z3TA 2J4UP 4D65A 2F1TA 3POUA 4GHBA 4O4UA 3VZTX 4N74A 2KC0A 1OPFA 2XTQA 5FVNA 4AYNA 2LFUA 2Y0KA 1S5LO 3A0BO 3PF1A 2F1CX 3AAAA 3FYXA 1BXWA 4AUIA 6PRNA 2F1VA 1HXTA 2ODJA 3A0HO 3AAAB 4O49A 3AA6A 2K4TA 4E1SA 2Y0LA 3AA6B 5ADXL 4LSHA 3JCUO 3K19A 4G76A 3T0SA 3BS0A 1MM5A 2LHFA 2O4VA 5H2FO 4QQ1A 1T16A 2J1NA 1E54A 4AKRA 5B5EO 1GFQA 1IZNA 3DA4A 2KDYA 3HW9A 4GCQA 4N58A 1IZNB 1P4TA 3AAEA 2R4OA 3VZWX 4FESA 1QJ8A 4FSOA 1THQA 2XE2A 4FZLA 5DL7A 1H6S1 3SZDA 2M06A 2XE3A 4RLCA 3UU2A 1ZHXA 3HOLA 5EE2A 2AXTO 3DWOX 5DL6A 5G39A 1ZHTA 3PRNA 2Y7SA 2R4LA 5G3AA 3VY8X 3HWBA 3DWNA 4GF4A 2YPVA 4F4BA 4FSPA 2JMMA 4PJ0O 4O4XA 3NJTA 1T1LA 3QRCA 2M07A 2MNHA 3POQA 5G26A 3SYBA 2N2LA 4RJXA 4D64A 4RJWA 1G90A 4O3XB 2ZFGA 2W80C 3LK41 1OSMA 3QRAA 1YS5A 4JFBA 5GV0A 4AKMA 2WJRA 3BRZA 7PRNA 1HXXA 2QTKA 5JDPA 3POXA 3AAEB 2FGRA 2WVPA 3LK2A 1MPFA 8PRNA 3LK2B 3VY9X 2ZLDA 3PORA 4UB6O 4D5UA 1ZHYA 2IWVA 2R8AA 3LK3A 4PR7A 5E79O 3PGSA 2Y0HA 3LK3B 4AFKA 1GFOA 3JTYA 2KZ7A 5D5DA 5KAIO 2KZ7B
chains in the Genus database with same CATH topology
2FGQX 4LSEA 2XMXA 1ZHWA 3PQSA 4O3YA 4GCSA 5DL5A 1ORMA 5AFUK 3SZVA 3UPGA 3WI4A 1PRNA 4BUMX 2PRNA 3AA1A 4AKRB 4E1TA 3VZUX 3AA1B 2N2MA 4FZNA 4FRTA 3SY9A 4G75A 1QJPA 1ZHZA 2MHLA 2GE4A 5T5FA 1Q9GA 3KVDD 3SYSA 4FUVA 1MM4A 1HXUA 3GP6A 4KR4A 3V8UA 2W81C 4B61A 4FOZA 3T20A 3LK42 3AA7A 3T24A 3A2SX 3AA7B 4RL9A 2ERVA 2K0LA 4AYDC 1PHOA 2Y2XA 4RLBA 3WI5A 4AZLA 4FT6A 3PQUA 1GFPA 5ADXK 4GCPA 3G7GA 4KRAA 4PUXA 1GFNA 4FRXA 3UAQA 3O0EA 4N59A 4O3ZA 2XE1A 4AYID 2KXPA 2PORA 2KXPB 2XE5A 5PRNA 3HOEA 1Q9FA 3VE1A 2XTRA 3TZGA 4LSIA 4XNKA 4FZMA 5AFUL 1GFMA 1BH3A 3EMNX 5DL8A 1BT9A 3SY7A 3VE2A 3DA3A 2X27X 1QJ9A 4O3WA 3AA0A 4LSFA 2OMFA 4AYMC 3AA0B 4JCHA 4FMSA 3C5OA 2XG6A 2YNKA 4U9CA 3NSGA 4XNLA 4KR8A 4AYEC 4C69X 3RBHA 4Z3TA 2J4UP 4D65A 2F1TA 3POUA 4GHBA 4O4UA 3VZTX 2KC0A 1OPFA 2XTQA 5FVNA 4AYNA 2LFUA 2Y0KA 3FYXA 3AAAA 4AUIA 1BXWA 6PRNA 2F1VA 1HXTA 2ODJA 3AAAB 4O49A 3AA6A 2K4TA 4E1SA 2Y0LA 3AA6B 5ADXL 4LSHA 3K19A 4G76A 3T0SA 1MM5A 2LHFA 2O4VA 4QQ1A 4AKRA 2J1NA 1E54A 1GFQA 1IZNA 3DA4A 2KDYA 3HW9A 4GCQA 4N58A 1IZNB 1P4TA 3AAEA 3VZWX 4FESA 1QJ8A 4FSOA 1THQA 2XE2A 4FZLA 5DL7A 1H6S1 3SZDA 2M06A 2XE3A 4RLCA 3UU2A 1ZHXA 3HOLA 5EE2A 5DL6A 1ZHTA 3PRNA 2Y7SA 3VY8X 3HWBA 4GF4A 4F4BA 2YPVA 4FSPA 2JMMA 4O4XA 3QRCA 2M07A 2MNHA 3POQA 5G26A 3SYBA 2N2LA 4RJXA 4D64A 4RJWA 1G90A 4O3XB 2ZFGA 2W80C 3LK41 1OSMA 3QRAA 1YS5A 4JFBA 5GV0A 4AKMA 7PRNA 1HXXA 2QTKA 5JDPA 3POXA 3AAEB 2FGRA 3LK2A 8PRNA 1MPFA 3LK2B 3VY9X 2ZLDA 3PORA 4D5UA 1ZHYA 3LK3A 5IYUA 2Y0HA 3LK3B 4AFKA 1GFOA 3JTYA 2KZ7A 5D5DA 2KZ7B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FGQ X;  4LSE A;  5DL5 A;  4GCS A;  3UPG A;  3SZV A;  3WI4 A;  1PRN A;  4BUM X;  2PRN A;  3VZU X;  4FRT A;  3SY9 A;  3SYS A;  1HXU A;  4KR4 A;  4FOZ A;  3T20 A;  3T24 A;  3A2S X;  1PHO A;  2Y2X A;  3WI5 A;  4FT6 A;  1GFP A;  4GCP A;  4KRA A;  1GFN A;  4FRX A;  3O0E A;  2XE1 A;  2POR A;  2XE5 A;  5PRN A;  4LSI A;  1GFM A;  1BH3 A;  3EMN X;  5DL8 A;  1BT9 A;  3SY7 A;  4LSF A;  2OMF A;  4FMS A;  2XG6 A;  4C69 X;  3NSG A;  4KR8 A;  2J4U P;  4D65 A;  3POU A;  3VZT X;  5FVN A;  1OPF A;  2Y0K A;  3FYX A;  4AUI A;  6PRN A;  2ODJ A;  1HXT A;  2K4T A;  2Y0L A;  4LSH A;  3K19 A;  3T0S A;  2O4V A;  2J1N A;  1E54 A;  1GFQ A;  4GCQ A;  3HW9 A;  3VZW X;  4FSO A;  2XE2 A;  5DL7 A;  1H6S 1;  3SZD A;  2XE3 A;  3UU2 A;  3PRN A;  3VY8 X;  3HWB A;  4FSP A;  3POQ A;  3SYB A;  4RJX A;  4D64 A;  4RJW A;  2ZFG A;  1OSM A;  4JFB A;  7PRN A;  1HXX A;  2QTK A;  5JDP A;  3POX A;  2FGR A;  8PRN A;  1MPF A;  3VY9 X;  2ZLD A;  3POR A;  4D5U A;  2Y0H A;  1GFO A;  3JTY A;  5DL6 A; 
#chains in the Genus database with same CATH topology
 2FGQ X;  2R89 A;  2XMX A;  1ZHW A;  3DZM A;  3PQS A;  4GCS A;  4LSE A;  1ORM A;  2R4P A;  4O3Y A;  5DL5 A;  3SZV A;  3WI4 A;  5AFU K;  3UPG A;  1PRN A;  4BUM X;  2PRN A;  3AA1 A;  4AKR B;  4E1T A;  3VZU X;  3AA1 B;  2N2M A;  4FZN A;  4FRT A;  3BRY A;  4G75 A;  3SY9 A;  5GTH O;  1QJP A;  1ZHZ A;  2MHL A;  3KZI O;  2IWW A;  2GE4 A;  4IL6 O;  5T5F A;  1Q9G A;  3WU2 O;  3KVD D;  3PGU A;  3SYS A;  4FUV A;  1MM4 A;  4K3C A;  1HXU A;  3GP6 A;  4KR4 A;  3V8U A;  2W81 C;  4UB8 O;  5KAF O;  4FOZ A;  4B61 A;  3T20 A;  3LK4 2;  3AA7 A;  3T24 A;  3A2S X;  3AA7 B;  4RL9 A;  2ERV A;  2K0L A;  4AYD C;  2X9K A;  2R88 A;  1PHO A;  2Y2X A;  4RLB A;  3WI5 A;  4AZL A;  4FQE A;  4FT6 A;  3PQU A;  1GFP A;  5B66 O;  5ADX K;  4GCP A;  3G7G A;  4KRA A;  4PUX A;  1GFN A;  4FRX A;  4K3B A;  5G38 A;  3O0E A;  4N59 A;  3UAQ A;  4O3Z A;  2XE1 A;  4CTD A;  5GTI O;  4AYI D;  2KXP A;  2POR A;  4C4V A;  2KXP B;  2XE5 A;  5PRN A;  4C4V B;  3HOE A;  1Q9F A;  3VE1 A;  5IYU A;  5TIS O;  2XTR A;  3PGR A;  3TZG A;  2WJQ A;  4LSI A;  4FZM A;  4N75 A;  4XNK A;  4C00 A;  5AFU L;  1GFM A;  1BH3 A;  3EMN X;  5DL8 A;  1BT9 A;  3SY7 A;  3VE2 A;  3DA3 A;  2X27 X;  1QJ9 A;  4O3W A;  2JQY A;  3AA0 A;  2OMF A;  4LSF A;  4AYM C;  3AA0 B;  4JCH A;  4FMS A;  3C5O A;  2XG6 A;  2YNK A;  4U9C A;  3NSG A;  4XNL A;  4KR8 A;  4AYE C;  2R4N A;  3RBH A;  4C69 X;  4Z3T A;  2J4U P;  4D65 A;  2F1T A;  3POU A;  4GHB A;  4O4U A;  3VZT X;  4N74 A;  2KC0 A;  1OPF A;  2XTQ A;  5FVN A;  4AYN A;  2LFU A;  2Y0K A;  1S5L O;  3A0B O;  3PF1 A;  2F1C X;  3AAA A;  3FYX A;  1BXW A;  4AUI A;  6PRN A;  2F1V A;  1HXT A;  2ODJ A;  3A0H O;  3AAA B;  4O49 A;  3AA6 A;  2K4T A;  4E1S A;  2Y0L A;  3AA6 B;  5ADX L;  4LSH A;  3JCU O;  3K19 A;  4G76 A;  3T0S A;  3BS0 A;  1MM5 A;  2LHF A;  2O4V A;  5H2F O;  4QQ1 A;  1T16 A;  2J1N A;  1E54 A;  4AKR A;  5B5E O;  1GFQ A;  1IZN A;  3DA4 A;  2KDY A;  3HW9 A;  4GCQ A;  4N58 A;  1IZN B;  1P4T A;  3AAE A;  2R4O A;  3VZW X;  4FES A;  1QJ8 A;  4FSO A;  1THQ A;  2XE2 A;  4FZL A;  5DL7 A;  1H6S 1;  3SZD A;  2M06 A;  2XE3 A;  4RLC A;  3UU2 A;  1ZHX A;  3HOL A;  5EE2 A;  2AXT O;  3DWO X;  5DL6 A;  5G39 A;  1ZHT A;  3PRN A;  2Y7S A;  2R4L A;  5G3A A;  3VY8 X;  3HWB A;  3DWN A;  4GF4 A;  2YPV A;  4F4B A;  4FSP A;  2JMM A;  4PJ0 O;  4O4X A;  3NJT A;  1T1L A;  3QRC A;  2M07 A;  2MNH A;  3POQ A;  5G26 A;  3SYB A;  2N2L A;  4RJX A;  4D64 A;  4RJW A;  1G90 A;  4O3X B;  2ZFG A;  2W80 C;  3LK4 1;  1OSM A;  3QRA A;  1YS5 A;  4JFB A;  5GV0 A;  4AKM A;  2WJR A;  3BRZ A;  7PRN A;  1HXX A;  2QTK A;  5JDP A;  3POX A;  3AAE B;  2FGR A;  2WVP A;  3LK2 A;  1MPF A;  8PRN A;  3LK2 B;  3VY9 X;  2ZLD A;  3POR A;  4UB6 O;  4D5U A;  1ZHY A;  2IWV A;  2R8A A;  3LK3 A;  4PR7 A;  5E79 O;  3PGS A;  2Y0H A;  3LK3 B;  4AFK A;  1GFO A;  3JTY A;  2KZ7 A;  5D5D A;  5KAI O;  2KZ7 B; 
#chains in the Genus database with same CATH homology
 2FGQ X;  4LSE A;  2XMX A;  1ZHW A;  3PQS A;  4O3Y A;  4GCS A;  5DL5 A;  1ORM A;  5AFU K;  3SZV A;  3UPG A;  3WI4 A;  1PRN A;  4BUM X;  2PRN A;  3AA1 A;  4AKR B;  4E1T A;  3VZU X;  3AA1 B;  2N2M A;  4FZN A;  4FRT A;  3SY9 A;  4G75 A;  1QJP A;  1ZHZ A;  2MHL A;  2GE4 A;  5T5F A;  1Q9G A;  3KVD D;  3SYS A;  4FUV A;  1MM4 A;  1HXU A;  3GP6 A;  4KR4 A;  3V8U A;  2W81 C;  4B61 A;  4FOZ A;  3T20 A;  3LK4 2;  3AA7 A;  3T24 A;  3A2S X;  3AA7 B;  4RL9 A;  2ERV A;  2K0L A;  4AYD C;  1PHO A;  2Y2X A;  4RLB A;  3WI5 A;  4AZL A;  4FT6 A;  3PQU A;  1GFP A;  5ADX K;  4GCP A;  3G7G A;  4KRA A;  4PUX A;  1GFN A;  4FRX A;  3UAQ A;  3O0E A;  4N59 A;  4O3Z A;  2XE1 A;  4AYI D;  2KXP A;  2POR A;  2KXP B;  2XE5 A;  5PRN A;  3HOE A;  1Q9F A;  3VE1 A;  2XTR A;  3TZG A;  4LSI A;  4XNK A;  4FZM A;  5AFU L;  1GFM A;  1BH3 A;  3EMN X;  5DL8 A;  1BT9 A;  3SY7 A;  3VE2 A;  3DA3 A;  2X27 X;  1QJ9 A;  4O3W A;  3AA0 A;  4LSF A;  2OMF A;  4AYM C;  3AA0 B;  4JCH A;  4FMS A;  3C5O A;  2XG6 A;  2YNK A;  4U9C A;  3NSG A;  4XNL A;  4KR8 A;  4AYE C;  4C69 X;  3RBH A;  4Z3T A;  2J4U P;  4D65 A;  2F1T A;  3POU A;  4GHB A;  4O4U A;  3VZT X;  2KC0 A;  1OPF A;  2XTQ A;  5FVN A;  4AYN A;  2LFU A;  2Y0K A;  3FYX A;  3AAA A;  4AUI A;  1BXW A;  6PRN A;  2F1V A;  1HXT A;  2ODJ A;  3AAA B;  4O49 A;  3AA6 A;  2K4T A;  4E1S A;  2Y0L A;  3AA6 B;  5ADX L;  4LSH A;  3K19 A;  4G76 A;  3T0S A;  1MM5 A;  2LHF A;  2O4V A;  4QQ1 A;  4AKR A;  2J1N A;  1E54 A;  1GFQ A;  1IZN A;  3DA4 A;  2KDY A;  3HW9 A;  4GCQ A;  4N58 A;  1IZN B;  1P4T A;  3AAE A;  3VZW X;  4FES A;  1QJ8 A;  4FSO A;  1THQ A;  2XE2 A;  4FZL A;  5DL7 A;  1H6S 1;  3SZD A;  2M06 A;  2XE3 A;  4RLC A;  3UU2 A;  1ZHX A;  3HOL A;  5EE2 A;  5DL6 A;  1ZHT A;  3PRN A;  2Y7S A;  3VY8 X;  3HWB A;  4GF4 A;  4F4B A;  2YPV A;  4FSP A;  2JMM A;  4O4X A;  3QRC A;  2M07 A;  2MNH A;  3POQ A;  5G26 A;  3SYB A;  2N2L A;  4RJX A;  4D64 A;  4RJW A;  1G90 A;  4O3X B;  2ZFG A;  2W80 C;  3LK4 1;  1OSM A;  3QRA A;  1YS5 A;  4JFB A;  5GV0 A;  4AKM A;  7PRN A;  1HXX A;  2QTK A;  5JDP A;  3POX A;  3AAE B;  2FGR A;  3LK2 A;  8PRN A;  1MPF A;  3LK2 B;  3VY9 X;  2ZLD A;  3POR A;  4D5U A;  1ZHY A;  3LK3 A;  5IYU A;  2Y0H A;  3LK3 B;  4AFK A;  1GFO A;  3JTY A;  2KZ7 A;  5D5D A;  2KZ7 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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