5DL5A

Crystal structure of acinetobacter baumannii occab1
Total Genus 120
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
120
sequence length
416
structure length
416
Chain Sequence
ESEQSEAKGFVEDANGSILFRTGYLTRDKKQGAKDTSSVAQSAIVSIESGFTPGIVGFGVGVVGDGSFKIGENKNAGNQMIPKHNDGSAYDHWARGGGSVKARFSNTTVRYGTQVLDLPVLASNTGRMVPEYFTGTLLTSHEIKNLEVVAGKFTKDQMSDQINTDADASGRGLDRAIVWGAKYKFNDNLNASYYGLDSKNALERHYANVNFKQPLANDSSLTYDFSGYHTKFDANAHTYSATGTVAPNYAADGIAGEEKTNNIWAISGTYATGPHSVMLAYQQNTGNVGYDYGQNADGFQSIYLPNSYMSDFIGNHEKSAQIQYNVDFGKLGVLPGLNWTTAFVYGWDIKVRNVTDDAQEREFFNQVKYTVQSGFAKDASLRIRNSYYRASDAYQGAYIGDTNEWRIFLDIPVKLF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
pubmed doi rcsb
source organism Acinetobacter baumannii ab307-0294
molecule tags Membrane protein
molecule keywords Membrane protein
total genus 120
structure length 416
sequence length 416
ec nomenclature
pdb deposition date 2015-09-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 5dl5A00
3PRNA 4FRTA 3K19A 2Y0LA 4D65A 5JDPA 4LSFA 1HXUA 4AUIA 1GFOA 2ZFGA 1E54A 3T24A 3WI5A 3SY9A 3JTYA 1PRNA 4KR8A 3POXA 7PRNA 4BUMX 3POUA 4FSOA 5DL8A 1BT9A 3PORA 3T20A 2OMFA 5DL7A 4FT6A 3VZTX 3O0EA 2PRNA 3UPGA 2Y0KA 3FYXA 8PRNA 4C69X 2Y2XA 4KR4A 2J4UP 1GFQA 4RJXA 2K4TA 3T0SA 4LSIA 2ODJA 1HXXA 4D5UA 1HXTA 4LSHA 2ZLDA 3HW9A 4KRAA 3NSGA 1GFMA 5DL5A 1GFPA 1OPFA 6PRNA 2FGRA 4FMSA 4GCSA 3SY7A 5PRNA 1GFNA 5FVNA 4JFBA 3A2SX 1OSMA 3WI4A 2PORA 3VY9X 3SZVA 4GCPA 3SYBA 2O4VA 3EMNX 4FSPA 4LSEA 3VY8X 4RJWA 1PHOA 1BH3A 2XE1A 5DL6A 3HWBA 1H6S1 3SZDA 2XE3A 2XE2A 4FRXA 3VZWX 3VZUX 4FOZA 2FGQX 2Y0HA 3SYSA 2XE5A 3POQA 4GCQA 3UU2A 1MPFA 2J1NA 4D64A 2XG6A 2QTKA
chains in the Genus database with same CATH superfamily
3PRNA 4U9CA 1S5LO 3AAEA 4FRTA 1ZHYA 2Y0LA 3K19A 4D65A 5JDPA 4LSFA 5G26A 5G3AA 1HXUA 4XNLA 1GFOA 4AUIA 2YPVA 5TISO 1IZNB 3AAAA 2ZFGA 3HOEA 1E54A 1MM5A 1IZNA 2R8AA 3PF1A 4PR7A 5KAIO 3T24A 5B66O 2W81C 4UB8O 3WI5A 3BS0A 5GTIO 4Z3TA 5GTHO 3DZMA 4GHBA 2LHFA 4C4VA 3SY9A 3JTYA 3HOLA 1MM4A 1PRNA 2IWVA 5G38A 2WVPA 5KAFO 3KZIO 5ADXK 4KR8A 2K0LA 3POXA 3TZGA 7PRNA 2F1TA 4BUMX 4AYDC 3POUA 4FSOA 4N58A 4JCHA 5DL8A 1BT9A 3PORA 2R4NA 1YS5A 2OMFA 2XMXA 3AAEB 3T20A 4N75A 5DL7A 4F4BA 3BRZA 2R88A 2M07A 3KVDD 4FT6A 3VZTX 3O0EA 5D5DA 4UB6O 5ADXL 2XTQA 4N59A 3AA6B 1Q9FA 2PRNA 3UPGA 2WJQA 2Y0KA 3AA6A 4RLCA 1ZHWA 2AXTO 1G90A 4RL9A 5DL6A 3FYXA 3VE1A 3AA7B 8PRNA 3JCUO 3WU2O 2R89A 4C69X 3BRYA 4N74A 4GF4A 5IYUA 2F1CX 2Y2XA 4KR4A 4O3WA 1T16A 2J4UP 4O3ZA 5GV0A 1GFQA 2XTRA 4RJXA 2K4TA 4O49A 5AFUL 3NJTA 4PUXA 2KXPB 2R4PA 3T0SA 4LSIA 2ODJA 1THQA 1HXXA 2LFUA 2X27X 4CTDA 4D5UA 2Y7SA 1HXTA 1QJPA 2GE4A 4FZMA 1P4TA 4FQEA 1ZHXA 2F1VA 2ZLDA 3PQSA 4LSHA 4XNKA 4AYEC 5H2FO 3LK3A 2ERVA 3HW9A 5T5FA 5B5EO 2N2LA 4KRAA 4G76A 4RLBA 1T1LA 3G7GA 3NSGA 3RBHA 1GFMA 2MHLA 3AA1B 4G75A 5DL5A 1GFPA 1OPFA 2JQYA 4O4UA 4O4XA 6PRNA 3DWNA 2FGRA 4FMSA 4GCSA 4O3YA 2IWWA 3GP6A 4AYID 2WJRA 4AFKA 3A0BO 2R4LA 2KC0A 3LK2A 3SY7A 5PRNA 1GFNA 3AAAB 5FVNA 4FESA 4JFBA 4E1SA 3A2SX 1OSMA 5EE2A 3LK42 3WI4A 4AYNA 3AA0B 2PORA 3PGSA 3VY9X 3SZVA 4GCPA 4QQ1A 4C4VB 3DA3A 4C00A 3DA4A 3SYBA 2O4VA 3AA1A 3QRAA 3EMNX 2YNKA 2M06A 2JMMA 4FSPA 2W80C 1ZHZA 3PGRA 4K3BA 2N2MA 4LSEA 1ORMA 3VY8X 2X9KA 1BH3A 1PHOA 2XE1A 3A0HO 4RJWA 3HWBA 3LK2B 1H6S1 2KZ7A 1ZHTA 3AA7A 5G39A 4FZNA 3SZDA 4AKRB 2XE3A 2XE2A 4FRXA 3VZWX 4AKRA 2KXPA 3VZUX 4B61A 4K3CA 5E79O 3AA0A 4FOZA 5AFUK 1QJ8A 2R4OA 3QRCA 1Q9GA 2KDYA 1QJ9A 4O3XB 3VE2A 2FGQX 4FZLA 2MNHA 2Y0HA 3C5OA 3SYSA 2XE5A 1BXWA 3UAQA 4AKMA 3POQA 3LK3B 4PJ0O 3LK41 4GCQA 3UU2A 4AZLA 4AYMC 1MPFA 3DWOX 4IL6O 2J1NA 4FUVA 4D64A 2XG6A 3PQUA 2QTKA 3PGUA 2KZ7B 4E1TA 3V8UA
chains in the Genus database with same CATH topology
3PRNA 4U9CA 3AAEA 4FRTA 1ZHYA 2Y0LA 3K19A 4D65A 5JDPA 4LSFA 5G26A 1HXUA 4XNLA 1GFOA 4AUIA 2YPVA 1IZNB 3AAAA 2ZFGA 3HOEA 1E54A 1MM5A 1IZNA 3T24A 2W81C 4Z3TA 3WI5A 4GHBA 2LHFA 3SY9A 3JTYA 3HOLA 1MM4A 1PRNA 5ADXK 4KR8A 2K0LA 3POXA 3TZGA 7PRNA 2F1TA 4BUMX 4AYDC 3POUA 4FSOA 4N58A 4JCHA 5DL8A 1BT9A 3PORA 3T20A 1YS5A 2OMFA 2XMXA 3AAEB 5DL7A 4F4BA 2M07A 3KVDD 4FT6A 3VZTX 3O0EA 5D5DA 5ADXL 2XTQA 4N59A 3AA6B 1Q9FA 2PRNA 3UPGA 2Y0KA 3AA6A 4RLCA 1ZHWA 1G90A 4RL9A 3FYXA 3VE1A 3AA7B 8PRNA 4C69X 4GF4A 5IYUA 2Y2XA 4KR4A 4O3WA 2J4UP 4O3ZA 5GV0A 1GFQA 2XTRA 4RJXA 2K4TA 4O49A 5AFUL 4PUXA 2KXPB 3T0SA 4LSIA 2ODJA 1THQA 2X27X 2LFUA 1HXXA 4D5UA 2Y7SA 1HXTA 1QJPA 2GE4A 4FZMA 1P4TA 4LSHA 1ZHXA 2F1VA 2ZLDA 3PQSA 4AYEC 3LK3A 2ERVA 3HW9A 5T5FA 2N2LA 4KRAA 4G76A 4RLBA 3G7GA 3NSGA 3RBHA 1GFMA 2MHLA 3AA1B 4G75A 5DL5A 1GFPA 1OPFA 4O4UA 4O4XA 6PRNA 2FGRA 4FMSA 4GCSA 4O3YA 3GP6A 4AYID 4AFKA 2KC0A 3LK2A 3SY7A 5PRNA 1GFNA 3AAAB 5FVNA 4FESA 4JFBA 4E1SA 3A2SX 1OSMA 5EE2A 3LK42 3WI4A 4AYNA 3AA0B 2PORA 3VY9X 3SZVA 4GCPA 4QQ1A 3DA3A 3DA4A 3SYBA 2O4VA 3AA1A 3QRAA 3EMNX 2YNKA 2M06A 2JMMA 4FSPA 2W80C 1ZHZA 2N2MA 4LSEA 1ORMA 3VY8X 4RJWA 1BH3A 1PHOA 2XE1A 4XNKA 5DL6A 3HWBA 3LK2B 1H6S1 2KZ7A 1ZHTA 3AA7A 3SZDA 4FZNA 4AKRB 2XE3A 2XE2A 4FRXA 3VZWX 4AKRA 2KXPA 3VZUX 4B61A 5AFUK 3AA0A 4FOZA 1QJ8A 3QRCA 1Q9GA 2KDYA 1QJ9A 4O3XB 3VE2A 2FGQX 4FZLA 2MNHA 2Y0HA 3C5OA 3SYSA 2XE5A 1BXWA 3UAQA 4AKMA 3POQA 3LK3B 3LK41 4GCQA 3UU2A 4AZLA 4AYMC 1MPFA 2J1NA 4FUVA 4D64A 2XG6A 3PQUA 2QTKA 2KZ7B 4E1TA 3V8UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PRN A;  4FRT A;  3K19 A;  2Y0L A;  4D65 A;  5JDP A;  4LSF A;  1HXU A;  4AUI A;  1GFO A;  2ZFG A;  1E54 A;  3T24 A;  3WI5 A;  3SY9 A;  3JTY A;  1PRN A;  4KR8 A;  3POX A;  7PRN A;  4BUM X;  3POU A;  4FSO A;  5DL8 A;  1BT9 A;  3POR A;  3T20 A;  2OMF A;  5DL7 A;  4FT6 A;  3VZT X;  3O0E A;  2PRN A;  3UPG A;  2Y0K A;  3FYX A;  8PRN A;  4C69 X;  2Y2X A;  4KR4 A;  2J4U P;  1GFQ A;  4RJX A;  2K4T A;  3T0S A;  4LSI A;  2ODJ A;  1HXX A;  4D5U A;  1HXT A;  4LSH A;  2ZLD A;  3HW9 A;  4KRA A;  3NSG A;  1GFM A;  5DL5 A;  1GFP A;  1OPF A;  6PRN A;  2FGR A;  4FMS A;  4GCS A;  3SY7 A;  5PRN A;  1GFN A;  5FVN A;  4JFB A;  3A2S X;  1OSM A;  3WI4 A;  2POR A;  3VY9 X;  3SZV A;  4GCP A;  3SYB A;  2O4V A;  3EMN X;  4FSP A;  4LSE A;  3VY8 X;  4RJW A;  1PHO A;  1BH3 A;  2XE1 A;  5DL6 A;  3HWB A;  1H6S 1;  3SZD A;  2XE3 A;  2XE2 A;  4FRX A;  3VZW X;  3VZU X;  4FOZ A;  2FGQ X;  2Y0H A;  3SYS A;  2XE5 A;  3POQ A;  4GCQ A;  3UU2 A;  1MPF A;  2J1N A;  4D64 A;  2XG6 A;  2QTK A; 
#chains in the Genus database with same CATH topology
 3PRN A;  4U9C A;  1S5L O;  3AAE A;  4FRT A;  1ZHY A;  2Y0L A;  3K19 A;  4D65 A;  5JDP A;  4LSF A;  5G26 A;  5G3A A;  1HXU A;  4XNL A;  1GFO A;  4AUI A;  2YPV A;  5TIS O;  1IZN B;  3AAA A;  2ZFG A;  3HOE A;  1E54 A;  1MM5 A;  1IZN A;  2R8A A;  3PF1 A;  4PR7 A;  5KAI O;  3T24 A;  5B66 O;  2W81 C;  4UB8 O;  3WI5 A;  3BS0 A;  5GTI O;  4Z3T A;  5GTH O;  3DZM A;  4GHB A;  2LHF A;  4C4V A;  3SY9 A;  3JTY A;  3HOL A;  1MM4 A;  1PRN A;  2IWV A;  5G38 A;  2WVP A;  5KAF O;  3KZI O;  5ADX K;  4KR8 A;  2K0L A;  3POX A;  3TZG A;  7PRN A;  2F1T A;  4BUM X;  4AYD C;  3POU A;  4FSO A;  4N58 A;  4JCH A;  5DL8 A;  1BT9 A;  3POR A;  2R4N A;  1YS5 A;  2OMF A;  2XMX A;  3AAE B;  3T20 A;  4N75 A;  5DL7 A;  4F4B A;  3BRZ A;  2R88 A;  2M07 A;  3KVD D;  4FT6 A;  3VZT X;  3O0E A;  5D5D A;  4UB6 O;  5ADX L;  2XTQ A;  4N59 A;  3AA6 B;  1Q9F A;  2PRN A;  3UPG A;  2WJQ A;  2Y0K A;  3AA6 A;  4RLC A;  1ZHW A;  2AXT O;  1G90 A;  4RL9 A;  5DL6 A;  3FYX A;  3VE1 A;  3AA7 B;  8PRN A;  3JCU O;  3WU2 O;  2R89 A;  4C69 X;  3BRY A;  4N74 A;  4GF4 A;  5IYU A;  2F1C X;  2Y2X A;  4KR4 A;  4O3W A;  1T16 A;  2J4U P;  4O3Z A;  5GV0 A;  1GFQ A;  2XTR A;  4RJX A;  2K4T A;  4O49 A;  5AFU L;  3NJT A;  4PUX A;  2KXP B;  2R4P A;  3T0S A;  4LSI A;  2ODJ A;  1THQ A;  1HXX A;  2LFU A;  2X27 X;  4CTD A;  4D5U A;  2Y7S A;  1HXT A;  1QJP A;  2GE4 A;  4FZM A;  1P4T A;  4FQE A;  1ZHX A;  2F1V A;  2ZLD A;  3PQS A;  4LSH A;  4XNK A;  4AYE C;  5H2F O;  3LK3 A;  2ERV A;  3HW9 A;  5T5F A;  5B5E O;  2N2L A;  4KRA A;  4G76 A;  4RLB A;  1T1L A;  3G7G A;  3NSG A;  3RBH A;  1GFM A;  2MHL A;  3AA1 B;  4G75 A;  5DL5 A;  1GFP A;  1OPF A;  2JQY A;  4O4U A;  4O4X A;  6PRN A;  3DWN A;  2FGR A;  4FMS A;  4GCS A;  4O3Y A;  2IWW A;  3GP6 A;  4AYI D;  2WJR A;  4AFK A;  3A0B O;  2R4L A;  2KC0 A;  3LK2 A;  3SY7 A;  5PRN A;  1GFN A;  3AAA B;  5FVN A;  4FES A;  4JFB A;  4E1S A;  3A2S X;  1OSM A;  5EE2 A;  3LK4 2;  3WI4 A;  4AYN A;  3AA0 B;  2POR A;  3PGS A;  3VY9 X;  3SZV A;  4GCP A;  4QQ1 A;  4C4V B;  3DA3 A;  4C00 A;  3DA4 A;  3SYB A;  2O4V A;  3AA1 A;  3QRA A;  3EMN X;  2YNK A;  2M06 A;  2JMM A;  4FSP A;  2W80 C;  1ZHZ A;  3PGR A;  4K3B A;  2N2M A;  4LSE A;  1ORM A;  3VY8 X;  2X9K A;  1BH3 A;  1PHO A;  2XE1 A;  3A0H O;  4RJW A;  3HWB A;  3LK2 B;  1H6S 1;  2KZ7 A;  1ZHT A;  3AA7 A;  5G39 A;  4FZN A;  3SZD A;  4AKR B;  2XE3 A;  2XE2 A;  4FRX A;  3VZW X;  4AKR A;  2KXP A;  3VZU X;  4B61 A;  4K3C A;  5E79 O;  3AA0 A;  4FOZ A;  5AFU K;  1QJ8 A;  2R4O A;  3QRC A;  1Q9G A;  2KDY A;  1QJ9 A;  4O3X B;  3VE2 A;  2FGQ X;  4FZL A;  2MNH A;  2Y0H A;  3C5O A;  3SYS A;  2XE5 A;  1BXW A;  3UAQ A;  4AKM A;  3POQ A;  3LK3 B;  4PJ0 O;  3LK4 1;  4GCQ A;  3UU2 A;  4AZL A;  4AYM C;  1MPF A;  3DWO X;  4IL6 O;  2J1N A;  4FUV A;  4D64 A;  2XG6 A;  3PQU A;  2QTK A;  3PGU A;  2KZ7 B;  4E1T A;  3V8U A; 
#chains in the Genus database with same CATH homology
 3PRN A;  4U9C A;  3AAE A;  4FRT A;  1ZHY A;  2Y0L A;  3K19 A;  4D65 A;  5JDP A;  4LSF A;  5G26 A;  1HXU A;  4XNL A;  1GFO A;  4AUI A;  2YPV A;  1IZN B;  3AAA A;  2ZFG A;  3HOE A;  1E54 A;  1MM5 A;  1IZN A;  3T24 A;  2W81 C;  4Z3T A;  3WI5 A;  4GHB A;  2LHF A;  3SY9 A;  3JTY A;  3HOL A;  1MM4 A;  1PRN A;  5ADX K;  4KR8 A;  2K0L A;  3POX A;  3TZG A;  7PRN A;  2F1T A;  4BUM X;  4AYD C;  3POU A;  4FSO A;  4N58 A;  4JCH A;  5DL8 A;  1BT9 A;  3POR A;  3T20 A;  1YS5 A;  2OMF A;  2XMX A;  3AAE B;  5DL7 A;  4F4B A;  2M07 A;  3KVD D;  4FT6 A;  3VZT X;  3O0E A;  5D5D A;  5ADX L;  2XTQ A;  4N59 A;  3AA6 B;  1Q9F A;  2PRN A;  3UPG A;  2Y0K A;  3AA6 A;  4RLC A;  1ZHW A;  1G90 A;  4RL9 A;  3FYX A;  3VE1 A;  3AA7 B;  8PRN A;  4C69 X;  4GF4 A;  5IYU A;  2Y2X A;  4KR4 A;  4O3W A;  2J4U P;  4O3Z A;  5GV0 A;  1GFQ A;  2XTR A;  4RJX A;  2K4T A;  4O49 A;  5AFU L;  4PUX A;  2KXP B;  3T0S A;  4LSI A;  2ODJ A;  1THQ A;  2X27 X;  2LFU A;  1HXX A;  4D5U A;  2Y7S A;  1HXT A;  1QJP A;  2GE4 A;  4FZM A;  1P4T A;  4LSH A;  1ZHX A;  2F1V A;  2ZLD A;  3PQS A;  4AYE C;  3LK3 A;  2ERV A;  3HW9 A;  5T5F A;  2N2L A;  4KRA A;  4G76 A;  4RLB A;  3G7G A;  3NSG A;  3RBH A;  1GFM A;  2MHL A;  3AA1 B;  4G75 A;  5DL5 A;  1GFP A;  1OPF A;  4O4U A;  4O4X A;  6PRN A;  2FGR A;  4FMS A;  4GCS A;  4O3Y A;  3GP6 A;  4AYI D;  4AFK A;  2KC0 A;  3LK2 A;  3SY7 A;  5PRN A;  1GFN A;  3AAA B;  5FVN A;  4FES A;  4JFB A;  4E1S A;  3A2S X;  1OSM A;  5EE2 A;  3LK4 2;  3WI4 A;  4AYN A;  3AA0 B;  2POR A;  3VY9 X;  3SZV A;  4GCP A;  4QQ1 A;  3DA3 A;  3DA4 A;  3SYB A;  2O4V A;  3AA1 A;  3QRA A;  3EMN X;  2YNK A;  2M06 A;  2JMM A;  4FSP A;  2W80 C;  1ZHZ A;  2N2M A;  4LSE A;  1ORM A;  3VY8 X;  4RJW A;  1BH3 A;  1PHO A;  2XE1 A;  4XNK A;  5DL6 A;  3HWB A;  3LK2 B;  1H6S 1;  2KZ7 A;  1ZHT A;  3AA7 A;  3SZD A;  4FZN A;  4AKR B;  2XE3 A;  2XE2 A;  4FRX A;  3VZW X;  4AKR A;  2KXP A;  3VZU X;  4B61 A;  5AFU K;  3AA0 A;  4FOZ A;  1QJ8 A;  3QRC A;  1Q9G A;  2KDY A;  1QJ9 A;  4O3X B;  3VE2 A;  2FGQ X;  4FZL A;  2MNH A;  2Y0H A;  3C5O A;  3SYS A;  2XE5 A;  1BXW A;  3UAQ A;  4AKM A;  3POQ A;  3LK3 B;  3LK4 1;  4GCQ A;  3UU2 A;  4AZL A;  4AYM C;  1MPF A;  2J1N A;  4FUV A;  4D64 A;  2XG6 A;  3PQU A;  2QTK A;  2KZ7 B;  4E1T A;  3V8U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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