5DL5A

Crystal structure of acinetobacter baumannii occab1
Total Genus 120
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
120
sequence length
416
structure length
416
Chain Sequence
ESEQSEAKGFVEDANGSILFRTGYLTRDKKQGAKDTSSVAQSAIVSIESGFTPGIVGFGVGVVGDGSFKIGENKNAGNQMIPKHNDGSAYDHWARGGGSVKARFSNTTVRYGTQVLDLPVLASNTGRMVPEYFTGTLLTSHEIKNLEVVAGKFTKDQMSDQINTDADASGRGLDRAIVWGAKYKFNDNLNASYYGLDSKNALERHYANVNFKQPLANDSSLTYDFSGYHTKFDANAHTYSATGTVAPNYAADGIAGEEKTNNIWAISGTYATGPHSVMLAYQQNTGNVGYDYGQNADGFQSIYLPNSYMSDFIGNHEKSAQIQYNVDFGKLGVLPGLNWTTAFVYGWDIKVRNVTDDAQEREFFNQVKYTVQSGFAKDASLRIRNSYYRASDAYQGAYIGDTNEWRIFLDIPVKLF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Membrane protein
publication title Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
pubmed doi rcsb
source organism Acinetobacter baumannii ab307-0294
total genus 120
structure length 416
sequence length 416
ec nomenclature
pdb deposition date 2015-09-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 5dl5A00
3SYSA 1HXXA 1HXTA 2Y2XA 3T0SA 1BH3A 4D65A 2FGRA 1GFOA 5DL5A 3PORA 3JTYA 3UU2A 3EMNX 1OPFA 3T20A 2QTKA 4FMSA 3SY7A 1H6S1 4GCQA 2PRNA 4FRXA 3VZUX 5FVNA 5DL7A 1E54A 4FSOA 4LSFA 4AUIA 3VY9X 1GFNA 4FT6A 4RJWA 5JDPA 3K19A 1PHOA 1HXUA 2OMFA 5PRNA 4D64A 4KR4A 2PORA 3T24A 4FSPA 3PRNA 3POXA 1MPFA 4C69X 3SY9A 4D5UA 4GCPA 3VY8X 3WI4A 3UPGA 5DL6A 3HWBA 1BT9A 1PRNA 2ZLDA 4GCSA 6PRNA 4KR8A 3SZDA 3FYXA 2XE2A 3O0EA 3HW9A 2XE3A 2Y0LA 2J4UP 3POUA 2K4TA 3POQA 3A2SX 3SYBA 4LSHA 4JFBA 1OSMA 1GFPA 4BUMX 1GFMA 2J1NA 2Y0HA 4LSEA 2FGQX 5DL8A 2XE1A 2O4VA 4RJXA 2ZFGA 4FOZA 7PRNA 3VZTX 4LSIA 4FRTA 1GFQA 3SZVA 2XG6A 3VZWX 3NSGA 3WI5A 2Y0KA 2XE5A 8PRNA 4KRAA 2ODJA
chains in the Genus database with same CATH superfamily
3AA7A 2WVPA 4GHBA 5KAIO 3SYSA 1HXXA 1HXTA 2Y2XA 3T0SA 4AKMA 1BH3A 4N74A 3VE2A 1ZHXA 4D65A 2FGRA 4AYID 4F4BA 1G90A 1GFOA 5DL5A 2F1TA 3PORA 4AFKA 3JTYA 3UU2A 3EMNX 4PUXA 4E1TA 1OPFA 2F1CX 3T20A 2R4OA 2QTKA 4FMSA 4O3XB 4U9CA 2MHLA 3BS0A 4XNKA 5GTHO 4FZLA 3SY7A 3DZMA 1H6S1 2IWVA 4AKRB 3DA4A 4FZNA 5TISO 1ZHTA 1T16A 2LHFA 4GCQA 2N2MA 5ADXK 4AYDC 3PQUA 2PRNA 4FRXA 3VZUX 4PR7A 2K0LA 3LK3B 5FVNA 3AAAB 1Q9FA 2W81C 5AFUL 1MM5A 5DL7A 1E54A 2GE4A 4QQ1A 1THQA 2KXPB 3AA6B 3AAEA 4FSOA 4LSFA 3UAQA 2KZ7A 3AAEB 4AUIA 3VY9X 3AA7B 1GFNA 4O3WA 4FT6A 4FQEA 3DWOX 2W80C 4RJWA 3LK42 3A0BO 4FUVA 5JDPA 2MNHA 3K19A 4G75A 2WJQA 3AA0A 4JCHA 5E79O 1PHOA 1HXUA 3AA0B 2OMFA 5PRNA 4D64A 2IWWA 4KR4A 2R8AA 4CTDA 5H2FO 2PORA 1S5LO 3T24A 4FSPA 3PRNA 3POXA 2ERVA 2N2LA 4O3ZA 3BRYA 4C4VA 1MPFA 3PGSA 1ORMA 2F1VA 2X27X 3GP6A 4RLBA 5G26A 3SY9A 4C69X 1IZNA 4N75A 4RLCA 4O4XA 4D5UA 4GCPA 5EE2A 1ZHZA 4AZLA 3VY8X 3WI4A 3UPGA 2XMXA 5GV0A 5DL6A 1QJ9A 3BRZA 5G3AA 3G7GA 3KVDD 3HWBA 1BT9A 4B61A 4GF4A 2LFUA 5IYUA 3AA1A 5KAFO 5T5FA 1PRNA 2KZ7B 4Z3TA 2ZLDA 1QJ8A 4FESA 4GCSA 4AYMC 6PRNA 4KR8A 3SZDA 2AXTO 5G39A 3FYXA 2KDYA 3JCUO 2XE2A 3PGRA 4IL6O 3O0EA 3HW9A 1QJPA 2XE3A 3LK41 3VE1A 2Y0LA 2J4UP 3POUA 5G38A 2K4TA 3POQA 1Q9GA 3A2SX 4K3CA 4PJ0O 3SYBA 1MM4A 2XTQA 1T1LA 4G76A 4LSHA 2Y7SA 5GTIO 2XTRA 1ZHWA 5B66O 2YNKA 4JFBA 1OSMA 4C4VB 1GFPA 3LK2A 3V8UA 4BUMX 1GFMA 2J1NA 2Y0HA 4O3YA 3HOEA 3WU2O 1IZNB 3RBHA 3KZIO 4LSEA 5ADXL 2WJRA 2FGQX 5DL8A 2R88A 3HOLA 4N59A 2XE1A 4UB6O 2M07A 4AYNA 3DWNA 2O4VA 3C5OA 4RJXA 3QRAA 2YPVA 2ZFGA 2R89A 3AA1B 2R4NA 4FOZA 4RL9A 7PRNA 4O4UA 4E1SA 3VZTX 3PF1A 3A0HO 3PQSA 4O49A 4LSIA 4FRTA 2JQYA 2R4PA 1GFQA 2KC0A 3SZVA 4AKRA 2XG6A 3DA3A 3VZWX 3NSGA 4XNLA 3WI5A 1YS5A 2X9KA 1BXWA 4N58A 4FZMA 1P4TA 2Y0KA 4UB8O 1ZHYA 4K3BA 4C00A 3QRCA 5AFUK 2JMMA 3LK3A 2XE5A 3AAAA 3NJTA 3PGUA 4AYEC 3LK2B 3TZGA 8PRNA 2KXPA 4KRAA 2M06A 5B5EO 3AA6A 2R4LA 2ODJA 5D5DA
chains in the Genus database with same CATH topology
3AA7A 4GHBA 3SYSA 1HXXA 1HXTA 2Y2XA 3T0SA 4AKMA 1BH3A 3VE2A 1ZHXA 4D65A 2FGRA 4AYID 4F4BA 1G90A 1GFOA 5DL5A 2F1TA 3PORA 4AFKA 3JTYA 3UU2A 3EMNX 4PUXA 4E1TA 1OPFA 3T20A 2QTKA 4FMSA 4O3XB 4U9CA 2MHLA 4XNKA 4FZLA 3SY7A 4AKRB 1H6S1 3DA4A 4FZNA 1ZHTA 2LHFA 4GCQA 2N2MA 5ADXK 4AYDC 3PQUA 2PRNA 4FRXA 3VZUX 2K0LA 3LK3B 5FVNA 3AAAB 1Q9FA 2W81C 5AFUL 1MM5A 5DL7A 1E54A 2GE4A 4QQ1A 1THQA 2KXPB 3AA6B 3AAEA 4FSOA 4LSFA 3UAQA 2KZ7A 3AAEB 4AUIA 3VY9X 3AA7B 1GFNA 4O3WA 4FT6A 2W80C 4RJWA 3LK42 4FUVA 5JDPA 2MNHA 3K19A 4G75A 3AA0A 4JCHA 1PHOA 1HXUA 3AA0B 2OMFA 5PRNA 4D64A 4KR4A 2PORA 3T24A 4FSPA 3PRNA 3POXA 2ERVA 2N2LA 4O3ZA 1MPFA 1ORMA 2F1VA 2X27X 3GP6A 4RLBA 5G26A 3SY9A 4C69X 1IZNA 4RLCA 4O4XA 4D5UA 4GCPA 5EE2A 1ZHZA 4AZLA 3VY8X 3WI4A 3UPGA 2XMXA 5GV0A 5DL6A 1QJ9A 3G7GA 3KVDD 3HWBA 1BT9A 4B61A 4GF4A 2LFUA 5IYUA 3AA1A 5T5FA 1PRNA 2KZ7B 4Z3TA 2ZLDA 1QJ8A 4FESA 4GCSA 4AYMC 6PRNA 4KR8A 3SZDA 3FYXA 2KDYA 2XE2A 3O0EA 3HW9A 1QJPA 2XE3A 3LK41 3VE1A 2Y0LA 2J4UP 3POUA 2K4TA 3POQA 1Q9GA 3A2SX 3SYBA 1MM4A 2XTQA 4G76A 4LSHA 2Y7SA 2XTRA 1ZHWA 2YNKA 4JFBA 1OSMA 1GFPA 3LK2A 3V8UA 4BUMX 1GFMA 2J1NA 2Y0HA 4O3YA 3HOEA 1IZNB 3RBHA 4LSEA 5ADXL 2FGQX 5DL8A 3HOLA 4N59A 2XE1A 4AYNA 2M07A 2O4VA 3C5OA 4RJXA 3QRAA 2YPVA 2ZFGA 3AA1B 4FOZA 4RL9A 7PRNA 4O4UA 4E1SA 3VZTX 3PQSA 4O49A 4LSIA 4FRTA 1GFQA 2KC0A 3SZVA 4AKRA 2XG6A 3DA3A 3VZWX 3NSGA 4XNLA 3WI5A 1YS5A 4N58A 1BXWA 4FZMA 1P4TA 2Y0KA 1ZHYA 5AFUK 3QRCA 2JMMA 3LK3A 2XE5A 3AAAA 4AYEC 3LK2B 3TZGA 8PRNA 2KXPA 4KRAA 2M06A 3AA6A 2ODJA 5D5DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SYS A;  1HXX A;  1HXT A;  2Y2X A;  3T0S A;  1BH3 A;  4D65 A;  2FGR A;  1GFO A;  5DL5 A;  3POR A;  3JTY A;  3UU2 A;  3EMN X;  1OPF A;  3T20 A;  2QTK A;  4FMS A;  3SY7 A;  1H6S 1;  4GCQ A;  2PRN A;  4FRX A;  3VZU X;  5FVN A;  5DL7 A;  1E54 A;  4FSO A;  4LSF A;  4AUI A;  3VY9 X;  1GFN A;  4FT6 A;  4RJW A;  5JDP A;  3K19 A;  1PHO A;  1HXU A;  2OMF A;  5PRN A;  4D64 A;  4KR4 A;  2POR A;  3T24 A;  4FSP A;  3PRN A;  3POX A;  1MPF A;  4C69 X;  3SY9 A;  4D5U A;  4GCP A;  3VY8 X;  3WI4 A;  3UPG A;  5DL6 A;  3HWB A;  1BT9 A;  1PRN A;  2ZLD A;  4GCS A;  6PRN A;  4KR8 A;  3SZD A;  3FYX A;  2XE2 A;  3O0E A;  3HW9 A;  2XE3 A;  2Y0L A;  2J4U P;  3POU A;  2K4T A;  3POQ A;  3A2S X;  3SYB A;  4LSH A;  4JFB A;  1OSM A;  1GFP A;  4BUM X;  1GFM A;  2J1N A;  2Y0H A;  4LSE A;  2FGQ X;  5DL8 A;  2XE1 A;  2O4V A;  4RJX A;  2ZFG A;  4FOZ A;  7PRN A;  3VZT X;  4LSI A;  4FRT A;  1GFQ A;  3SZV A;  2XG6 A;  3VZW X;  3NSG A;  3WI5 A;  2Y0K A;  2XE5 A;  8PRN A;  4KRA A;  2ODJ A; 
#chains in the Genus database with same CATH topology
 3AA7 A;  2WVP A;  4GHB A;  5KAI O;  3SYS A;  1HXX A;  1HXT A;  2Y2X A;  3T0S A;  4AKM A;  1BH3 A;  4N74 A;  3VE2 A;  1ZHX A;  4D65 A;  2FGR A;  4AYI D;  4F4B A;  1G90 A;  1GFO A;  5DL5 A;  2F1T A;  3POR A;  4AFK A;  3JTY A;  3UU2 A;  3EMN X;  4PUX A;  4E1T A;  1OPF A;  2F1C X;  3T20 A;  2R4O A;  2QTK A;  4FMS A;  4O3X B;  4U9C A;  2MHL A;  3BS0 A;  4XNK A;  5GTH O;  4FZL A;  3SY7 A;  3DZM A;  1H6S 1;  2IWV A;  4AKR B;  3DA4 A;  4FZN A;  5TIS O;  1ZHT A;  1T16 A;  2LHF A;  4GCQ A;  2N2M A;  5ADX K;  4AYD C;  3PQU A;  2PRN A;  4FRX A;  3VZU X;  4PR7 A;  2K0L A;  3LK3 B;  5FVN A;  3AAA B;  1Q9F A;  2W81 C;  5AFU L;  1MM5 A;  5DL7 A;  1E54 A;  2GE4 A;  4QQ1 A;  1THQ A;  2KXP B;  3AA6 B;  3AAE A;  4FSO A;  4LSF A;  3UAQ A;  2KZ7 A;  3AAE B;  4AUI A;  3VY9 X;  3AA7 B;  1GFN A;  4O3W A;  4FT6 A;  4FQE A;  3DWO X;  2W80 C;  4RJW A;  3LK4 2;  3A0B O;  4FUV A;  5JDP A;  2MNH A;  3K19 A;  4G75 A;  2WJQ A;  3AA0 A;  4JCH A;  5E79 O;  1PHO A;  1HXU A;  3AA0 B;  2OMF A;  5PRN A;  4D64 A;  2IWW A;  4KR4 A;  2R8A A;  4CTD A;  5H2F O;  2POR A;  1S5L O;  3T24 A;  4FSP A;  3PRN A;  3POX A;  2ERV A;  2N2L A;  4O3Z A;  3BRY A;  4C4V A;  1MPF A;  3PGS A;  1ORM A;  2F1V A;  2X27 X;  3GP6 A;  4RLB A;  5G26 A;  3SY9 A;  4C69 X;  1IZN A;  4N75 A;  4RLC A;  4O4X A;  4D5U A;  4GCP A;  5EE2 A;  1ZHZ A;  4AZL A;  3VY8 X;  3WI4 A;  3UPG A;  2XMX A;  5GV0 A;  5DL6 A;  1QJ9 A;  3BRZ A;  5G3A A;  3G7G A;  3KVD D;  3HWB A;  1BT9 A;  4B61 A;  4GF4 A;  2LFU A;  5IYU A;  3AA1 A;  5KAF O;  5T5F A;  1PRN A;  2KZ7 B;  4Z3T A;  2ZLD A;  1QJ8 A;  4FES A;  4GCS A;  4AYM C;  6PRN A;  4KR8 A;  3SZD A;  2AXT O;  5G39 A;  3FYX A;  2KDY A;  3JCU O;  2XE2 A;  3PGR A;  4IL6 O;  3O0E A;  3HW9 A;  1QJP A;  2XE3 A;  3LK4 1;  3VE1 A;  2Y0L A;  2J4U P;  3POU A;  5G38 A;  2K4T A;  3POQ A;  1Q9G A;  3A2S X;  4K3C A;  4PJ0 O;  3SYB A;  1MM4 A;  2XTQ A;  1T1L A;  4G76 A;  4LSH A;  2Y7S A;  5GTI O;  2XTR A;  1ZHW A;  5B66 O;  2YNK A;  4JFB A;  1OSM A;  4C4V B;  1GFP A;  3LK2 A;  3V8U A;  4BUM X;  1GFM A;  2J1N A;  2Y0H A;  4O3Y A;  3HOE A;  3WU2 O;  1IZN B;  3RBH A;  3KZI O;  4LSE A;  5ADX L;  2WJR A;  2FGQ X;  5DL8 A;  2R88 A;  3HOL A;  4N59 A;  2XE1 A;  4UB6 O;  2M07 A;  4AYN A;  3DWN A;  2O4V A;  3C5O A;  4RJX A;  3QRA A;  2YPV A;  2ZFG A;  2R89 A;  3AA1 B;  2R4N A;  4FOZ A;  4RL9 A;  7PRN A;  4O4U A;  4E1S A;  3VZT X;  3PF1 A;  3A0H O;  3PQS A;  4O49 A;  4LSI A;  4FRT A;  2JQY A;  2R4P A;  1GFQ A;  2KC0 A;  3SZV A;  4AKR A;  2XG6 A;  3DA3 A;  3VZW X;  3NSG A;  4XNL A;  3WI5 A;  1YS5 A;  2X9K A;  1BXW A;  4N58 A;  4FZM A;  1P4T A;  2Y0K A;  4UB8 O;  1ZHY A;  4K3B A;  4C00 A;  3QRC A;  5AFU K;  2JMM A;  3LK3 A;  2XE5 A;  3AAA A;  3NJT A;  3PGU A;  4AYE C;  3LK2 B;  3TZG A;  8PRN A;  2KXP A;  4KRA A;  2M06 A;  5B5E O;  3AA6 A;  2R4L A;  2ODJ A;  5D5D A; 
#chains in the Genus database with same CATH homology
 3AA7 A;  4GHB A;  3SYS A;  1HXX A;  1HXT A;  2Y2X A;  3T0S A;  4AKM A;  1BH3 A;  3VE2 A;  1ZHX A;  4D65 A;  2FGR A;  4AYI D;  4F4B A;  1G90 A;  1GFO A;  5DL5 A;  2F1T A;  3POR A;  4AFK A;  3JTY A;  3UU2 A;  3EMN X;  4PUX A;  4E1T A;  1OPF A;  3T20 A;  2QTK A;  4FMS A;  4O3X B;  4U9C A;  2MHL A;  4XNK A;  4FZL A;  3SY7 A;  4AKR B;  1H6S 1;  3DA4 A;  4FZN A;  1ZHT A;  2LHF A;  4GCQ A;  2N2M A;  5ADX K;  4AYD C;  3PQU A;  2PRN A;  4FRX A;  3VZU X;  2K0L A;  3LK3 B;  5FVN A;  3AAA B;  1Q9F A;  2W81 C;  5AFU L;  1MM5 A;  5DL7 A;  1E54 A;  2GE4 A;  4QQ1 A;  1THQ A;  2KXP B;  3AA6 B;  3AAE A;  4FSO A;  4LSF A;  3UAQ A;  2KZ7 A;  3AAE B;  4AUI A;  3VY9 X;  3AA7 B;  1GFN A;  4O3W A;  4FT6 A;  2W80 C;  4RJW A;  3LK4 2;  4FUV A;  5JDP A;  2MNH A;  3K19 A;  4G75 A;  3AA0 A;  4JCH A;  1PHO A;  1HXU A;  3AA0 B;  2OMF A;  5PRN A;  4D64 A;  4KR4 A;  2POR A;  3T24 A;  4FSP A;  3PRN A;  3POX A;  2ERV A;  2N2L A;  4O3Z A;  1MPF A;  1ORM A;  2F1V A;  2X27 X;  3GP6 A;  4RLB A;  5G26 A;  3SY9 A;  4C69 X;  1IZN A;  4RLC A;  4O4X A;  4D5U A;  4GCP A;  5EE2 A;  1ZHZ A;  4AZL A;  3VY8 X;  3WI4 A;  3UPG A;  2XMX A;  5GV0 A;  5DL6 A;  1QJ9 A;  3G7G A;  3KVD D;  3HWB A;  1BT9 A;  4B61 A;  4GF4 A;  2LFU A;  5IYU A;  3AA1 A;  5T5F A;  1PRN A;  2KZ7 B;  4Z3T A;  2ZLD A;  1QJ8 A;  4FES A;  4GCS A;  4AYM C;  6PRN A;  4KR8 A;  3SZD A;  3FYX A;  2KDY A;  2XE2 A;  3O0E A;  3HW9 A;  1QJP A;  2XE3 A;  3LK4 1;  3VE1 A;  2Y0L A;  2J4U P;  3POU A;  2K4T A;  3POQ A;  1Q9G A;  3A2S X;  3SYB A;  1MM4 A;  2XTQ A;  4G76 A;  4LSH A;  2Y7S A;  2XTR A;  1ZHW A;  2YNK A;  4JFB A;  1OSM A;  1GFP A;  3LK2 A;  3V8U A;  4BUM X;  1GFM A;  2J1N A;  2Y0H A;  4O3Y A;  3HOE A;  1IZN B;  3RBH A;  4LSE A;  5ADX L;  2FGQ X;  5DL8 A;  3HOL A;  4N59 A;  2XE1 A;  4AYN A;  2M07 A;  2O4V A;  3C5O A;  4RJX A;  3QRA A;  2YPV A;  2ZFG A;  3AA1 B;  4FOZ A;  4RL9 A;  7PRN A;  4O4U A;  4E1S A;  3VZT X;  3PQS A;  4O49 A;  4LSI A;  4FRT A;  1GFQ A;  2KC0 A;  3SZV A;  4AKR A;  2XG6 A;  3DA3 A;  3VZW X;  3NSG A;  4XNL A;  3WI5 A;  1YS5 A;  4N58 A;  1BXW A;  4FZM A;  1P4T A;  2Y0K A;  1ZHY A;  5AFU K;  3QRC A;  2JMM A;  3LK3 A;  2XE5 A;  3AAA A;  4AYE C;  3LK2 B;  3TZG A;  8PRN A;  2KXP A;  4KRA A;  2M06 A;  3AA6 A;  2ODJ A;  5D5D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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