1GFNA

Ompf porin deletion (mutant delta 109-114)
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
334
structure length
327
Chain Sequence
b'AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALPYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and functional characterization of OmpF porin mutants selected for larger pore size. I. Crystallographic analysis.
pubmed doi rcsb
molecule keywords MATRIX PORIN OUTER MEMBRANE PROTEIN F
source organism Escherichia coli
molecule tags Transmembrane protein
total genus 92
structure length 327
sequence length 334
ec nomenclature
pdb deposition date 1996-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 1gfnA00
3SY9A 4LSEA 4GCPA 5DL6A 3HWBA 1BH3A 1OPFA 3WI4A 2XG6A 1MPFA 4D5UA 3FYXA 3VZUX 1GFPA 2ZFGA 4FRTA 7PRNA 3EMNX 1HXXA 3O0EA 3T20A 1PRNA 2XE3A 4FOZA 2QTKA 4FRXA 4LSFA 2XE5A 3UPGA 5DL5A 4C69X 3PORA 3T0SA 1GFQA 1HXTA 3SZVA 2XE1A 4LSIA 1BT9A 1GFNA 3SYSA 2FGQX 2Y2XA 2Y0HA 1GFMA 3POXA 2ODJA 4FT6A 4FMSA 4KR4A 5DL8A 4FSPA 3SZDA 1H6S1 2ZLDA 3A2SX 2FGRA 3WI5A 4KR8A 8PRNA 2J1NA 1HXUA 3VY9X 2J4UP 3T24A 2Y0LA 1PHOA 4KRAA 3VY8X 2XE2A 3PRNA 5PRNA 4BUMX 2OMFA 3VZWX 3POUA 2K4TA 5JDPA 3SYBA 4RJWA 6PRNA 4FSOA 4D65A 3HW9A 4AUIA 2Y0KA 4LSHA 1E54A 3POQA 4JFBA 1GFOA 2O4VA 2PRNA 2PORA 1OSMA 3VZTX 3SY7A 3K19A 4GCQA 3JTYA 4RJXA 4D64A 5FVNA 3UU2A 3NSGA 5DL7A 4GCSA
chains in the Genus database with same CATH superfamily
2JMMA 3SY9A 3A0BO 3VE2A 2F1TA 4LSEA 4U9CA 4GCPA 1T1LA 2IWWA 2MNHA 3BRZA 4AKRB 3AA0B 2N2LA 4C00A 1BXWA 2R88A 1ZHZA 2F1VA 3LK2B 5DL6A 3LK42 4O4XA 4O4UA 4XNKA 3HWBA 1BH3A 1OPFA 3RBHA 5GV0A 3WI4A 4CTDA 2XG6A 3PGUA 1ORMA 1MPFA 2ERVA 4N58A 3FYXA 4QQ1A 3VZUX 4AKRA 3JCUO 4B61A 3AA0A 4D5UA 2XMXA 5G39A 1GFPA 2R4LA 2ZFGA 1QJ8A 2XTRA 3LK2A 4FRTA 7PRNA 1MM5A 1G90A 2F1CX 2WVPA 5H2FO 4FZMA 2KDYA 2LHFA 3EMNX 1ZHXA 1HXXA 3O0EA 3T20A 1PRNA 3PQUA 4E1SA 2R4OA 2XE3A 2QTKA 4FOZA 4AYID 4FRXA 3LK3B 4LSFA 5KAIO 5T5FA 2XE5A 4N59A 3AAAB 3UPGA 5DL5A 3QRCA 3PORA 3KVDD 4C69X 3PQSA 3SZDA 3T0SA 4G75A 4N75A 1GFQA 5D5DA 5GTIO 4Z3TA 1HXTA 2GE4A 3KZIO 3PGRA 3SZVA 3V8UA 2XE1A 3C5OA 2WJQA 4LSIA 3DA4A 3LK3A 1BT9A 4AZLA 3G7GA 3HOEA 3AAAA 1Q9FA 5IYUA 3TZGA 4AYMC 1GFNA 2KXPB 5KAFO 3SYSA 2IWVA 5B66O 2FGQX 2JQYA 2Y2XA 3PF1A 4AYDC 3AA7B 4G76A 1IZNB 2Y0HA 4AYEC 1GFMA 3POXA 4PUXA 2ODJA 4FT6A 4FMSA 2R89A 4KR4A 1QJPA 3AA6A 4FSPA 4FUVA 1H6S1 1YS5A 2KXPA 1QJ9A 2R4PA 3UAQA 2R4NA 2YNKA 2ZLDA 3A0HO 2KZ7B 4FQEA 3AA1B 2AXTO 3A2SX 4GF4A 5G3AA 5B5EO 2FGRA 3DA3A 4IL6O 4AKMA 3WI5A 2X27X 3AA7A 4GCSA 4KR8A 1IZNA 4K3BA 4F4BA 2M06A 4FESA 2J1NA 8PRNA 5ADXK 3QRAA 1HXUA 4O3XB 3DZMA 3VY9X 4FZLA 3AAEB 3T24A 2Y0LA 1PHOA 3WU2O 4RLCA 4RL9A 4E1TA 2J4UP 4KRAA 4GHBA 2KZ7A 3NJTA 3AA1A 3VY8X 5ADXL 2XE2A 2R8AA 2M07A 4O49A 5E79O 3PRNA 3AA6B 5PRNA 5G26A 2N2MA 2MHLA 4BUMX 2OMFA 4UB6O 1ZHTA 3VZWX 3AAEA 2YPVA 3POUA 5EE2A 4K3CA 3DWOX 5JDPA 3GP6A 4PR7A 3SYBA 3BRYA 4RJWA 6PRNA 1MM4A 4FSOA 4O3ZA 2WJRA 3VE1A 5GTHO 4C4VB 4JCHA 4D65A 1Q9GA 2LFUA 3HW9A 3PGSA 4AYNA 1P4TA 4AUIA 2Y0KA 4LSHA 4FZNA 3LK41 1E54A 2W81C 3POQA 5AFUL 1T16A 4JFBA 1ZHYA 3HOLA 5DL8A 2X9KA 1GFOA 3DWNA 2KC0A 4UB8O 2O4VA 2PRNA 2PORA 2XTQA 4C4VA 4N74A 1OSMA 1S5LO 5AFUK 1ZHWA 4AFKA 1THQA 2K0LA 4O3WA 3VZTX 3BS0A 4O3YA 5G38A 3K19A 4XNLA 4GCQA 3SY7A 4PJ0O 5TISO 3JTYA 4RJXA 4RLBA 4D64A 2W80C 2Y7SA 5FVNA 3NSGA 5DL7A 3UU2A 2K4TA
chains in the Genus database with same CATH topology
2JMMA 3SY9A 3VE2A 2F1TA 4LSEA 4U9CA 4GCPA 2MNHA 4AKRB 3AA0B 2N2LA 1BXWA 1ZHZA 2F1VA 3LK2B 5DL6A 3LK42 4O4XA 4O4UA 4XNKA 3HWBA 1BH3A 1OPFA 3RBHA 5GV0A 3WI4A 2XG6A 1ORMA 1MPFA 2ERVA 4N58A 3FYXA 4QQ1A 3VZUX 4AKRA 4B61A 4D5UA 3AA0A 2XMXA 1GFPA 2ZFGA 1QJ8A 2XTRA 3LK2A 4FRTA 7PRNA 1MM5A 1G90A 4FZMA 2KDYA 2LHFA 3EMNX 1ZHXA 1HXXA 3O0EA 3T20A 1PRNA 3PQUA 4E1SA 2XE3A 4FOZA 2QTKA 4FRXA 3LK3B 4LSFA 5T5FA 2XE5A 4N59A 3AAAB 3UPGA 5DL5A 3QRCA 3PORA 3KVDD 4C69X 3PQSA 3SZDA 3T0SA 4G75A 1GFQA 5D5DA 4Z3TA 1HXTA 2GE4A 3SZVA 3V8UA 2XE1A 3C5OA 4LSIA 3DA4A 3LK3A 1BT9A 4AZLA 3G7GA 3HOEA 3AAAA 1Q9FA 5IYUA 3TZGA 4AYMC 1GFNA 2KXPB 3SYSA 2FGQX 2Y2XA 4AYDC 3AA7B 4G76A 1IZNB 2Y0HA 4AYEC 1GFMA 3POXA 4PUXA 2ODJA 4FT6A 4FMSA 4KR4A 5DL8A 1QJPA 3AA6A 4FSPA 4FUVA 1H6S1 1YS5A 2KXPA 1QJ9A 4AYID 3UAQA 2YNKA 2ZLDA 4GF4A 2KZ7B 3AA1B 3A2SX 2FGRA 3DA3A 4AKMA 3WI5A 2X27X 3AA7A 4GCSA 4KR8A 1IZNA 4F4BA 8PRNA 2M06A 4FESA 2J1NA 5ADXK 3QRAA 1HXUA 4O3XB 3VY9X 4FZLA 3AAEB 3T24A 2Y0LA 1PHOA 2J4UP 4RLCA 4RL9A 4E1TA 4KRAA 4GHBA 2KZ7A 3AA1A 3VY8X 5ADXL 2XE2A 2M07A 4O49A 3PRNA 3AA6B 5PRNA 5G26A 2N2MA 2MHLA 4BUMX 2OMFA 3VZWX 1ZHTA 3AAEA 2YPVA 3POUA 5EE2A 5JDPA 3GP6A 3SYBA 4RJWA 6PRNA 1MM4A 4FSOA 4O3ZA 3VE1A 4D65A 4JCHA 1Q9GA 2LFUA 3HW9A 4AYNA 1P4TA 4AUIA 2Y0KA 4LSHA 4FZNA 3LK41 1E54A 2W81C 3POQA 5AFUL 4JFBA 1ZHYA 3HOLA 1GFOA 2KC0A 2O4VA 2PRNA 2PORA 2XTQA 1OSMA 5AFUK 1ZHWA 4AFKA 1THQA 2K0LA 4O3WA 3VZTX 4O3YA 3SY7A 3K19A 4XNLA 4GCQA 3JTYA 4RJXA 4RLBA 4D64A 2W80C 2Y7SA 5FVNA 3NSGA 5DL7A 3UU2A 2K4TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SY9 A;  4LSE A;  4GCP A;  5DL6 A;  3HWB A;  1BH3 A;  1OPF A;  3WI4 A;  2XG6 A;  1MPF A;  4D5U A;  3FYX A;  3VZU X;  1GFP A;  2ZFG A;  4FRT A;  7PRN A;  3EMN X;  1HXX A;  3O0E A;  3T20 A;  1PRN A;  2XE3 A;  4FOZ A;  2QTK A;  4FRX A;  4LSF A;  2XE5 A;  3UPG A;  5DL5 A;  4C69 X;  3POR A;  3T0S A;  1GFQ A;  1HXT A;  3SZV A;  2XE1 A;  4LSI A;  1BT9 A;  1GFN A;  3SYS A;  2FGQ X;  2Y2X A;  2Y0H A;  1GFM A;  3POX A;  2ODJ A;  4FT6 A;  4FMS A;  4KR4 A;  5DL8 A;  4FSP A;  3SZD A;  1H6S 1;  2ZLD A;  3A2S X;  2FGR A;  3WI5 A;  4KR8 A;  8PRN A;  2J1N A;  1HXU A;  3VY9 X;  2J4U P;  3T24 A;  2Y0L A;  1PHO A;  4KRA A;  3VY8 X;  2XE2 A;  3PRN A;  5PRN A;  4BUM X;  2OMF A;  3VZW X;  3POU A;  2K4T A;  5JDP A;  3SYB A;  4RJW A;  6PRN A;  4FSO A;  4D65 A;  3HW9 A;  4AUI A;  2Y0K A;  4LSH A;  1E54 A;  3POQ A;  4JFB A;  1GFO A;  2O4V A;  2PRN A;  2POR A;  1OSM A;  3VZT X;  3SY7 A;  3K19 A;  4GCQ A;  3JTY A;  4RJX A;  4D64 A;  5FVN A;  3UU2 A;  3NSG A;  5DL7 A;  4GCS A; 
#chains in the Genus database with same CATH topology
 2JMM A;  3SY9 A;  3A0B O;  3VE2 A;  2F1T A;  4LSE A;  4U9C A;  4GCP A;  1T1L A;  2IWW A;  2MNH A;  3BRZ A;  4AKR B;  3AA0 B;  2N2L A;  4C00 A;  1BXW A;  2R88 A;  1ZHZ A;  2F1V A;  3LK2 B;  5DL6 A;  3LK4 2;  4O4X A;  4O4U A;  4XNK A;  3HWB A;  1BH3 A;  1OPF A;  3RBH A;  5GV0 A;  3WI4 A;  4CTD A;  2XG6 A;  3PGU A;  1ORM A;  1MPF A;  2ERV A;  4N58 A;  3FYX A;  4QQ1 A;  3VZU X;  4AKR A;  3JCU O;  4B61 A;  3AA0 A;  4D5U A;  2XMX A;  5G39 A;  1GFP A;  2R4L A;  2ZFG A;  1QJ8 A;  2XTR A;  3LK2 A;  4FRT A;  7PRN A;  1MM5 A;  1G90 A;  2F1C X;  2WVP A;  5H2F O;  4FZM A;  2KDY A;  2LHF A;  3EMN X;  1ZHX A;  1HXX A;  3O0E A;  3T20 A;  1PRN A;  3PQU A;  4E1S A;  2R4O A;  2XE3 A;  2QTK A;  4FOZ A;  4AYI D;  4FRX A;  3LK3 B;  4LSF A;  5KAI O;  5T5F A;  2XE5 A;  4N59 A;  3AAA B;  3UPG A;  5DL5 A;  3QRC A;  3POR A;  3KVD D;  4C69 X;  3PQS A;  3SZD A;  3T0S A;  4G75 A;  4N75 A;  1GFQ A;  5D5D A;  5GTI O;  4Z3T A;  1HXT A;  2GE4 A;  3KZI O;  3PGR A;  3SZV A;  3V8U A;  2XE1 A;  3C5O A;  2WJQ A;  4LSI A;  3DA4 A;  3LK3 A;  1BT9 A;  4AZL A;  3G7G A;  3HOE A;  3AAA A;  1Q9F A;  5IYU A;  3TZG A;  4AYM C;  1GFN A;  2KXP B;  5KAF O;  3SYS A;  2IWV A;  5B66 O;  2FGQ X;  2JQY A;  2Y2X A;  3PF1 A;  4AYD C;  3AA7 B;  4G76 A;  1IZN B;  2Y0H A;  4AYE C;  1GFM A;  3POX A;  4PUX A;  2ODJ A;  4FT6 A;  4FMS A;  2R89 A;  4KR4 A;  1QJP A;  3AA6 A;  4FSP A;  4FUV A;  1H6S 1;  1YS5 A;  2KXP A;  1QJ9 A;  2R4P A;  3UAQ A;  2R4N A;  2YNK A;  2ZLD A;  3A0H O;  2KZ7 B;  4FQE A;  3AA1 B;  2AXT O;  3A2S X;  4GF4 A;  5G3A A;  5B5E O;  2FGR A;  3DA3 A;  4IL6 O;  4AKM A;  3WI5 A;  2X27 X;  3AA7 A;  4GCS A;  4KR8 A;  1IZN A;  4K3B A;  4F4B A;  2M06 A;  4FES A;  2J1N A;  8PRN A;  5ADX K;  3QRA A;  1HXU A;  4O3X B;  3DZM A;  3VY9 X;  4FZL A;  3AAE B;  3T24 A;  2Y0L A;  1PHO A;  3WU2 O;  4RLC A;  4RL9 A;  4E1T A;  2J4U P;  4KRA A;  4GHB A;  2KZ7 A;  3NJT A;  3AA1 A;  3VY8 X;  5ADX L;  2XE2 A;  2R8A A;  2M07 A;  4O49 A;  5E79 O;  3PRN A;  3AA6 B;  5PRN A;  5G26 A;  2N2M A;  2MHL A;  4BUM X;  2OMF A;  4UB6 O;  1ZHT A;  3VZW X;  3AAE A;  2YPV A;  3POU A;  5EE2 A;  4K3C A;  3DWO X;  5JDP A;  3GP6 A;  4PR7 A;  3SYB A;  3BRY A;  4RJW A;  6PRN A;  1MM4 A;  4FSO A;  4O3Z A;  2WJR A;  3VE1 A;  5GTH O;  4C4V B;  4JCH A;  4D65 A;  1Q9G A;  2LFU A;  3HW9 A;  3PGS A;  4AYN A;  1P4T A;  4AUI A;  2Y0K A;  4LSH A;  4FZN A;  3LK4 1;  1E54 A;  2W81 C;  3POQ A;  5AFU L;  1T16 A;  4JFB A;  1ZHY A;  3HOL A;  5DL8 A;  2X9K A;  1GFO A;  3DWN A;  2KC0 A;  4UB8 O;  2O4V A;  2PRN A;  2POR A;  2XTQ A;  4C4V A;  4N74 A;  1OSM A;  1S5L O;  5AFU K;  1ZHW A;  4AFK A;  1THQ A;  2K0L A;  4O3W A;  3VZT X;  3BS0 A;  4O3Y A;  5G38 A;  3K19 A;  4XNL A;  4GCQ A;  3SY7 A;  4PJ0 O;  5TIS O;  3JTY A;  4RJX A;  4RLB A;  4D64 A;  2W80 C;  2Y7S A;  5FVN A;  3NSG A;  5DL7 A;  3UU2 A;  2K4T A; 
#chains in the Genus database with same CATH homology
 2JMM A;  3SY9 A;  3VE2 A;  2F1T A;  4LSE A;  4U9C A;  4GCP A;  2MNH A;  4AKR B;  3AA0 B;  2N2L A;  1BXW A;  1ZHZ A;  2F1V A;  3LK2 B;  5DL6 A;  3LK4 2;  4O4X A;  4O4U A;  4XNK A;  3HWB A;  1BH3 A;  1OPF A;  3RBH A;  5GV0 A;  3WI4 A;  2XG6 A;  1ORM A;  1MPF A;  2ERV A;  4N58 A;  3FYX A;  4QQ1 A;  3VZU X;  4AKR A;  4B61 A;  4D5U A;  3AA0 A;  2XMX A;  1GFP A;  2ZFG A;  1QJ8 A;  2XTR A;  3LK2 A;  4FRT A;  7PRN A;  1MM5 A;  1G90 A;  4FZM A;  2KDY A;  2LHF A;  3EMN X;  1ZHX A;  1HXX A;  3O0E A;  3T20 A;  1PRN A;  3PQU A;  4E1S A;  2XE3 A;  4FOZ A;  2QTK A;  4FRX A;  3LK3 B;  4LSF A;  5T5F A;  2XE5 A;  4N59 A;  3AAA B;  3UPG A;  5DL5 A;  3QRC A;  3POR A;  3KVD D;  4C69 X;  3PQS A;  3SZD A;  3T0S A;  4G75 A;  1GFQ A;  5D5D A;  4Z3T A;  1HXT A;  2GE4 A;  3SZV A;  3V8U A;  2XE1 A;  3C5O A;  4LSI A;  3DA4 A;  3LK3 A;  1BT9 A;  4AZL A;  3G7G A;  3HOE A;  3AAA A;  1Q9F A;  5IYU A;  3TZG A;  4AYM C;  1GFN A;  2KXP B;  3SYS A;  2FGQ X;  2Y2X A;  4AYD C;  3AA7 B;  4G76 A;  1IZN B;  2Y0H A;  4AYE C;  1GFM A;  3POX A;  4PUX A;  2ODJ A;  4FT6 A;  4FMS A;  4KR4 A;  5DL8 A;  1QJP A;  3AA6 A;  4FSP A;  4FUV A;  1H6S 1;  1YS5 A;  2KXP A;  1QJ9 A;  4AYI D;  3UAQ A;  2YNK A;  2ZLD A;  4GF4 A;  2KZ7 B;  3AA1 B;  3A2S X;  2FGR A;  3DA3 A;  4AKM A;  3WI5 A;  2X27 X;  3AA7 A;  4GCS A;  4KR8 A;  1IZN A;  4F4B A;  8PRN A;  2M06 A;  4FES A;  2J1N A;  5ADX K;  3QRA A;  1HXU A;  4O3X B;  3VY9 X;  4FZL A;  3AAE B;  3T24 A;  2Y0L A;  1PHO A;  2J4U P;  4RLC A;  4RL9 A;  4E1T A;  4KRA A;  4GHB A;  2KZ7 A;  3AA1 A;  3VY8 X;  5ADX L;  2XE2 A;  2M07 A;  4O49 A;  3PRN A;  3AA6 B;  5PRN A;  5G26 A;  2N2M A;  2MHL A;  4BUM X;  2OMF A;  3VZW X;  1ZHT A;  3AAE A;  2YPV A;  3POU A;  5EE2 A;  5JDP A;  3GP6 A;  3SYB A;  4RJW A;  6PRN A;  1MM4 A;  4FSO A;  4O3Z A;  3VE1 A;  4D65 A;  4JCH A;  1Q9G A;  2LFU A;  3HW9 A;  4AYN A;  1P4T A;  4AUI A;  2Y0K A;  4LSH A;  4FZN A;  3LK4 1;  1E54 A;  2W81 C;  3POQ A;  5AFU L;  4JFB A;  1ZHY A;  3HOL A;  1GFO A;  2KC0 A;  2O4V A;  2PRN A;  2POR A;  2XTQ A;  1OSM A;  5AFU K;  1ZHW A;  4AFK A;  1THQ A;  2K0L A;  4O3W A;  3VZT X;  4O3Y A;  3SY7 A;  3K19 A;  4XNL A;  4GCQ A;  3JTY A;  4RJX A;  4RLB A;  4D64 A;  2W80 C;  2Y7S A;  5FVN A;  3NSG A;  5DL7 A;  3UU2 A;  2K4T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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