1GFNA

Ompf porin deletion (mutant delta 109-114)
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
334
structure length
327
Chain Sequence
AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALPYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transmembrane protein
source organism Escherichia coli
publication title Structural and functional characterization of OmpF porin mutants selected for larger pore size. I. Crystallographic analysis.
pubmed doi rcsb
molecule keywords MATRIX PORIN OUTER MEMBRANE PROTEIN F
total genus 92
structure length 327
sequence length 334
ec nomenclature
pdb deposition date 1996-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 1gfnA00
2XE1A 4KRAA 4GCQA 2XE2A 5DL8A 4D64A 5JDPA 1GFOA 2ZFGA 3PRNA 3POQA 2XE5A 3EMNX 1GFPA 2ODJA 2K4TA 4RJWA 4FMSA 1GFQA 3VZTX 3JTYA 3HW9A 4KR4A 3SY7A 3UU2A 5DL6A 3FYXA 3T24A 1PRNA 3SZVA 2Y0LA 2Y0KA 5DL5A 2ZLDA 2QTKA 5PRNA 3VY8X 4BUMX 4AUIA 3POUA 2Y2XA 4LSFA 3A2SX 3VZUX 6PRNA 3UPGA 3T0SA 3NSGA 3T20A 4LSEA 2J1NA 3VY9X 1PHOA 4FSPA 4FRXA 3POXA 8PRNA 3O0EA 2PRNA 3HWBA 2Y0HA 7PRNA 1H6S1 3WI4A 4FOZA 1GFMA 4LSIA 4LSHA 1HXTA 2FGQX 2FGRA 2O4VA 5FVNA 4GCSA 4C69X 2XE3A 4JFBA 3K19A 4RJXA 3WI5A 2J4UP 4FSOA 3VZWX 1GFNA 3SZDA 1HXUA 3PORA 3SYBA 1HXXA 4FRTA 4GCPA 1BT9A 2OMFA 1OSMA 4KR8A 1BH3A 2PORA 4D65A 4FT6A 1OPFA 5DL7A 2XG6A 1MPFA 3SYSA 1E54A 3SY9A 4D5UA
chains in the Genus database with same CATH superfamily
2XE1A 3KVDD 4PJ0O 5TISO 5GV0A 3AAEB 4O3YA 4KRAA 1ZHXA 3AA1B 4FZMA 4GCQA 4RLBA 2R4OA 2XE2A 5DL8A 2WJRA 4D64A 5JDPA 1GFOA 2ZFGA 2GE4A 3QRCA 5G38A 4K3CA 4AYMC 4N75A 5G26A 3NJTA 4AKMA 2IWWA 1THQA 1MM4A 2F1CX 2IWVA 2XE5A 2XTRA 3DWNA 3POQA 3EMNX 3PRNA 3V8UA 4AFKA 1GFPA 3AAAB 2M06A 2N2LA 2ODJA 3DWOX 1QJ9A 2MNHA 4JCHA 2K4TA 4N59A 5D5DA 4AKRB 4RJWA 4XNKA 2X27X 1IZNA 4FMSA 3PQSA 2XTQA 1QJ8A 2F1VA 1GFQA 3VZTX 4AYEC 4U9CA 3JTYA 3PGRA 4O49A 4GF4A 4K3BA 4C00A 5B66O 5IYUA 3HW9A 3AA0A 3DZMA 3LK3A 1S5LO 4KR4A 3SY7A 3UU2A 4PR7A 5DL6A 3LK2B 3FYXA 4Z3TA 3T24A 5AFUL 1PRNA 4UB8O 3SZVA 2Y0LA 2Y0KA 3AA1A 5DL5A 2JMMA 2KZ7A 2JQYA 2QTKA 2F1TA 2ZLDA 5PRNA 3UAQA 3VE1A 3HOLA 4AYID 4C4VB 3QRAA 3VY8X 4BUMX 5EE2A 4XNLA 3RBHA 4AUIA 2R89A 3POUA 2Y2XA 4LSFA 3A2SX 3VZUX 6PRNA 3UPGA 4UB6O 4PUXA 3T0SA 3NSGA 3HOEA 3T20A 2R4LA 4LSEA 2J1NA 3VY9X 4AKRA 4FZLA 1PHOA 1T1LA 4G75A 4GHBA 1BXWA 4FSPA 4FRXA 2WJQA 3POXA 3LK41 4AYDC 8PRNA 3DA4A 1MM5A 3O0EA 2PRNA 2R4NA 3DA3A 3AA7B 3HWBA 2Y0HA 7PRNA 1H6S1 1YS5A 2AXTO 3WI4A 3AA0B 4FOZA 1ZHWA 1GFMA 4LSIA 3BRZA 5H2FO 4LSHA 2R4PA 4CTDA 4O3WA 2KDYA 2KXPB 1HXTA 2X9KA 2FGQX 3LK2A 1G90A 4O4XA 3PGSA 5KAIO 5AFUK 3AA6B 3AAEA 2FGRA 5ADXL 4FUVA 4B61A 5GTHO 1T16A 2O4VA 4GCSA 5FVNA 3WU2O 4C69X 4C4VA 2WVPA 5B5EO 2XE3A 1Q9GA 3G7GA 2YNKA 4JFBA 2W81C 4O4UA 3BS0A 3K19A 4RJXA 3WI5A 2J4UP 4RLCA 1QJPA 1Q9FA 5G39A 3PGUA 3AAAA 2R8AA 1IZNB 4FSOA 4F4BA 5ADXK 3VZWX 1GFNA 2R88A 4AZLA 3SZDA 4IL6O 4O3ZA 2LFUA 4N58A 3AA7A 4RL9A 3PF1A 3VE2A 1HXUA 5G3AA 2ERVA 3PORA 3SYBA 3TZGA 1ZHTA 2N2MA 3GP6A 3PQUA 2XMXA 3JCUO 1HXXA 2KXPA 3KZIO 3C5OA 5KAFO 2KC0A 2KZ7B 4FRTA 4GCPA 5T5FA 1BT9A 2OMFA 2K0LA 3AA6A 1OSMA 4KR8A 1BH3A 2MHLA 2PORA 4G76A 3BRYA 5E79O 1ZHZA 1P4TA 4AYNA 4E1TA 4FESA 4FT6A 4D65A 3LK3B 1OPFA 2Y7SA 5DL7A 2XG6A 3A0BO 4FZNA 2W80C 2LHFA 1MPFA 3SYSA 4QQ1A 1ORMA 4E1SA 2M07A 3A0HO 3LK42 1E54A 4FQEA 3SY9A 5GTIO 4N74A 4D5UA 4O3XB 2YPVA 1ZHYA
chains in the Genus database with same CATH topology
2XE1A 3KVDD 5GV0A 3AAEB 4O3YA 4KRAA 1ZHXA 3AA1B 4FZMA 4GCQA 4RLBA 2XE2A 5DL8A 4D64A 5JDPA 1GFOA 2ZFGA 2GE4A 3QRCA 4AYMC 5G26A 4AKMA 1THQA 1MM4A 3PRNA 2XTRA 2XE5A 3POQA 3V8UA 5AFUK 3EMNX 4AFKA 1GFPA 3AAAB 2M06A 2N2LA 2ODJA 4JCHA 1QJ9A 2MNHA 4AKRB 2K4TA 4N59A 5D5DA 4RJWA 4XNKA 2X27X 1IZNA 4FMSA 3PQSA 2XTQA 1QJ8A 2F1VA 1GFQA 3VZTX 4AYEC 4U9CA 3JTYA 4O49A 4GF4A 5IYUA 3HW9A 3AA0A 3LK3A 4KR4A 3SY7A 3UU2A 5DL6A 3LK2B 3FYXA 4Z3TA 3T24A 5AFUL 1PRNA 3SZVA 2Y0LA 2Y0KA 3AA1A 5DL5A 2JMMA 2KZ7A 2QTKA 2ZLDA 2F1TA 5PRNA 3VE1A 3UAQA 4AYID 3HOLA 3QRAA 3VY8X 4BUMX 5EE2A 4XNLA 3RBHA 4AUIA 3POUA 2Y2XA 4LSFA 3A2SX 3VZUX 6PRNA 3UPGA 4PUXA 3T0SA 3NSGA 3HOEA 3T20A 4LSEA 2J1NA 3VY9X 4AKRA 4FZLA 1PHOA 4G75A 4GHBA 4F4BA 1BXWA 4FSPA 4FRXA 3POXA 4AYDC 3LK41 8PRNA 3DA4A 1MM5A 3O0EA 2PRNA 3DA3A 3AA7B 3HWBA 2Y0HA 7PRNA 1H6S1 1YS5A 3WI4A 3AA0B 4FOZA 1ZHWA 1GFMA 4LSIA 4LSHA 4O3WA 2KDYA 2KXPB 1HXTA 3LK2A 2FGQX 1G90A 4O4XA 3AA6B 3AAEA 2FGRA 5ADXL 4FUVA 4B61A 2O4VA 5FVNA 4GCSA 4C69X 2XE3A 1Q9GA 3G7GA 2YNKA 4JFBA 2W81C 4O4UA 3K19A 4RJXA 3WI5A 2J4UP 4RLCA 1QJPA 1Q9FA 3AAAA 4FSOA 1IZNB 5ADXK 3VZWX 1GFNA 4AZLA 3SZDA 4O3ZA 2LFUA 4N58A 3AA7A 4RL9A 3VE2A 1HXUA 2ERVA 3PORA 3SYBA 3TZGA 1ZHTA 2N2MA 3GP6A 3PQUA 2XMXA 1HXXA 2KXPA 3C5OA 2KC0A 2KZ7B 4FRTA 4GCPA 5T5FA 1BT9A 2OMFA 2K0LA 3AA6A 1OSMA 4KR8A 1BH3A 2MHLA 2PORA 4G76A 1ZHZA 1P4TA 4AYNA 4E1TA 4FESA 4FT6A 4D65A 3LK3B 1OPFA 2Y7SA 5DL7A 2XG6A 4FZNA 2W80C 2LHFA 1MPFA 3SYSA 4QQ1A 1ORMA 4E1SA 2M07A 3LK42 1E54A 3SY9A 4D5UA 4O3XB 2YPVA 1ZHYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XE1 A;  4KRA A;  4GCQ A;  2XE2 A;  5DL8 A;  4D64 A;  5JDP A;  1GFO A;  2ZFG A;  3PRN A;  3POQ A;  2XE5 A;  3EMN X;  1GFP A;  2ODJ A;  2K4T A;  4RJW A;  4FMS A;  1GFQ A;  3VZT X;  3JTY A;  3HW9 A;  4KR4 A;  3SY7 A;  3UU2 A;  5DL6 A;  3FYX A;  3T24 A;  1PRN A;  3SZV A;  2Y0L A;  2Y0K A;  5DL5 A;  2ZLD A;  2QTK A;  5PRN A;  3VY8 X;  4BUM X;  4AUI A;  3POU A;  2Y2X A;  4LSF A;  3A2S X;  3VZU X;  6PRN A;  3UPG A;  3T0S A;  3NSG A;  3T20 A;  4LSE A;  2J1N A;  3VY9 X;  1PHO A;  4FSP A;  4FRX A;  3POX A;  8PRN A;  3O0E A;  2PRN A;  3HWB A;  2Y0H A;  7PRN A;  1H6S 1;  3WI4 A;  4FOZ A;  1GFM A;  4LSI A;  4LSH A;  1HXT A;  2FGQ X;  2FGR A;  2O4V A;  5FVN A;  4GCS A;  4C69 X;  2XE3 A;  4JFB A;  3K19 A;  4RJX A;  3WI5 A;  2J4U P;  4FSO A;  3VZW X;  1GFN A;  3SZD A;  1HXU A;  3POR A;  3SYB A;  1HXX A;  4FRT A;  4GCP A;  1BT9 A;  2OMF A;  1OSM A;  4KR8 A;  1BH3 A;  2POR A;  4D65 A;  4FT6 A;  1OPF A;  5DL7 A;  2XG6 A;  1MPF A;  3SYS A;  1E54 A;  3SY9 A;  4D5U A; 
#chains in the Genus database with same CATH topology
 2XE1 A;  3KVD D;  4PJ0 O;  5TIS O;  5GV0 A;  3AAE B;  4O3Y A;  4KRA A;  1ZHX A;  3AA1 B;  4FZM A;  4GCQ A;  4RLB A;  2R4O A;  2XE2 A;  5DL8 A;  2WJR A;  4D64 A;  5JDP A;  1GFO A;  2ZFG A;  2GE4 A;  3QRC A;  5G38 A;  4K3C A;  4AYM C;  4N75 A;  5G26 A;  3NJT A;  4AKM A;  2IWW A;  1THQ A;  1MM4 A;  2F1C X;  2IWV A;  2XE5 A;  2XTR A;  3DWN A;  3POQ A;  3EMN X;  3PRN A;  3V8U A;  4AFK A;  1GFP A;  3AAA B;  2M06 A;  2N2L A;  2ODJ A;  3DWO X;  1QJ9 A;  2MNH A;  4JCH A;  2K4T A;  4N59 A;  5D5D A;  4AKR B;  4RJW A;  4XNK A;  2X27 X;  1IZN A;  4FMS A;  3PQS A;  2XTQ A;  1QJ8 A;  2F1V A;  1GFQ A;  3VZT X;  4AYE C;  4U9C A;  3JTY A;  3PGR A;  4O49 A;  4GF4 A;  4K3B A;  4C00 A;  5B66 O;  5IYU A;  3HW9 A;  3AA0 A;  3DZM A;  3LK3 A;  1S5L O;  4KR4 A;  3SY7 A;  3UU2 A;  4PR7 A;  5DL6 A;  3LK2 B;  3FYX A;  4Z3T A;  3T24 A;  5AFU L;  1PRN A;  4UB8 O;  3SZV A;  2Y0L A;  2Y0K A;  3AA1 A;  5DL5 A;  2JMM A;  2KZ7 A;  2JQY A;  2QTK A;  2F1T A;  2ZLD A;  5PRN A;  3UAQ A;  3VE1 A;  3HOL A;  4AYI D;  4C4V B;  3QRA A;  3VY8 X;  4BUM X;  5EE2 A;  4XNL A;  3RBH A;  4AUI A;  2R89 A;  3POU A;  2Y2X A;  4LSF A;  3A2S X;  3VZU X;  6PRN A;  3UPG A;  4UB6 O;  4PUX A;  3T0S A;  3NSG A;  3HOE A;  3T20 A;  2R4L A;  4LSE A;  2J1N A;  3VY9 X;  4AKR A;  4FZL A;  1PHO A;  1T1L A;  4G75 A;  4GHB A;  1BXW A;  4FSP A;  4FRX A;  2WJQ A;  3POX A;  3LK4 1;  4AYD C;  8PRN A;  3DA4 A;  1MM5 A;  3O0E A;  2PRN A;  2R4N A;  3DA3 A;  3AA7 B;  3HWB A;  2Y0H A;  7PRN A;  1H6S 1;  1YS5 A;  2AXT O;  3WI4 A;  3AA0 B;  4FOZ A;  1ZHW A;  1GFM A;  4LSI A;  3BRZ A;  5H2F O;  4LSH A;  2R4P A;  4CTD A;  4O3W A;  2KDY A;  2KXP B;  1HXT A;  2X9K A;  2FGQ X;  3LK2 A;  1G90 A;  4O4X A;  3PGS A;  5KAI O;  5AFU K;  3AA6 B;  3AAE A;  2FGR A;  5ADX L;  4FUV A;  4B61 A;  5GTH O;  1T16 A;  2O4V A;  4GCS A;  5FVN A;  3WU2 O;  4C69 X;  4C4V A;  2WVP A;  5B5E O;  2XE3 A;  1Q9G A;  3G7G A;  2YNK A;  4JFB A;  2W81 C;  4O4U A;  3BS0 A;  3K19 A;  4RJX A;  3WI5 A;  2J4U P;  4RLC A;  1QJP A;  1Q9F A;  5G39 A;  3PGU A;  3AAA A;  2R8A A;  1IZN B;  4FSO A;  4F4B A;  5ADX K;  3VZW X;  1GFN A;  2R88 A;  4AZL A;  3SZD A;  4IL6 O;  4O3Z A;  2LFU A;  4N58 A;  3AA7 A;  4RL9 A;  3PF1 A;  3VE2 A;  1HXU A;  5G3A A;  2ERV A;  3POR A;  3SYB A;  3TZG A;  1ZHT A;  2N2M A;  3GP6 A;  3PQU A;  2XMX A;  3JCU O;  1HXX A;  2KXP A;  3KZI O;  3C5O A;  5KAF O;  2KC0 A;  2KZ7 B;  4FRT A;  4GCP A;  5T5F A;  1BT9 A;  2OMF A;  2K0L A;  3AA6 A;  1OSM A;  4KR8 A;  1BH3 A;  2MHL A;  2POR A;  4G76 A;  3BRY A;  5E79 O;  1ZHZ A;  1P4T A;  4AYN A;  4E1T A;  4FES A;  4FT6 A;  4D65 A;  3LK3 B;  1OPF A;  2Y7S A;  5DL7 A;  2XG6 A;  3A0B O;  4FZN A;  2W80 C;  2LHF A;  1MPF A;  3SYS A;  4QQ1 A;  1ORM A;  4E1S A;  2M07 A;  3A0H O;  3LK4 2;  1E54 A;  4FQE A;  3SY9 A;  5GTI O;  4N74 A;  4D5U A;  4O3X B;  2YPV A;  1ZHY A; 
#chains in the Genus database with same CATH homology
 2XE1 A;  3KVD D;  5GV0 A;  3AAE B;  4O3Y A;  4KRA A;  1ZHX A;  3AA1 B;  4FZM A;  4GCQ A;  4RLB A;  2XE2 A;  5DL8 A;  4D64 A;  5JDP A;  1GFO A;  2ZFG A;  2GE4 A;  3QRC A;  4AYM C;  5G26 A;  4AKM A;  1THQ A;  1MM4 A;  3PRN A;  2XTR A;  2XE5 A;  3POQ A;  3V8U A;  5AFU K;  3EMN X;  4AFK A;  1GFP A;  3AAA B;  2M06 A;  2N2L A;  2ODJ A;  4JCH A;  1QJ9 A;  2MNH A;  4AKR B;  2K4T A;  4N59 A;  5D5D A;  4RJW A;  4XNK A;  2X27 X;  1IZN A;  4FMS A;  3PQS A;  2XTQ A;  1QJ8 A;  2F1V A;  1GFQ A;  3VZT X;  4AYE C;  4U9C A;  3JTY A;  4O49 A;  4GF4 A;  5IYU A;  3HW9 A;  3AA0 A;  3LK3 A;  4KR4 A;  3SY7 A;  3UU2 A;  5DL6 A;  3LK2 B;  3FYX A;  4Z3T A;  3T24 A;  5AFU L;  1PRN A;  3SZV A;  2Y0L A;  2Y0K A;  3AA1 A;  5DL5 A;  2JMM A;  2KZ7 A;  2QTK A;  2ZLD A;  2F1T A;  5PRN A;  3VE1 A;  3UAQ A;  4AYI D;  3HOL A;  3QRA A;  3VY8 X;  4BUM X;  5EE2 A;  4XNL A;  3RBH A;  4AUI A;  3POU A;  2Y2X A;  4LSF A;  3A2S X;  3VZU X;  6PRN A;  3UPG A;  4PUX A;  3T0S A;  3NSG A;  3HOE A;  3T20 A;  4LSE A;  2J1N A;  3VY9 X;  4AKR A;  4FZL A;  1PHO A;  4G75 A;  4GHB A;  4F4B A;  1BXW A;  4FSP A;  4FRX A;  3POX A;  4AYD C;  3LK4 1;  8PRN A;  3DA4 A;  1MM5 A;  3O0E A;  2PRN A;  3DA3 A;  3AA7 B;  3HWB A;  2Y0H A;  7PRN A;  1H6S 1;  1YS5 A;  3WI4 A;  3AA0 B;  4FOZ A;  1ZHW A;  1GFM A;  4LSI A;  4LSH A;  4O3W A;  2KDY A;  2KXP B;  1HXT A;  3LK2 A;  2FGQ X;  1G90 A;  4O4X A;  3AA6 B;  3AAE A;  2FGR A;  5ADX L;  4FUV A;  4B61 A;  2O4V A;  5FVN A;  4GCS A;  4C69 X;  2XE3 A;  1Q9G A;  3G7G A;  2YNK A;  4JFB A;  2W81 C;  4O4U A;  3K19 A;  4RJX A;  3WI5 A;  2J4U P;  4RLC A;  1QJP A;  1Q9F A;  3AAA A;  4FSO A;  1IZN B;  5ADX K;  3VZW X;  1GFN A;  4AZL A;  3SZD A;  4O3Z A;  2LFU A;  4N58 A;  3AA7 A;  4RL9 A;  3VE2 A;  1HXU A;  2ERV A;  3POR A;  3SYB A;  3TZG A;  1ZHT A;  2N2M A;  3GP6 A;  3PQU A;  2XMX A;  1HXX A;  2KXP A;  3C5O A;  2KC0 A;  2KZ7 B;  4FRT A;  4GCP A;  5T5F A;  1BT9 A;  2OMF A;  2K0L A;  3AA6 A;  1OSM A;  4KR8 A;  1BH3 A;  2MHL A;  2POR A;  4G76 A;  1ZHZ A;  1P4T A;  4AYN A;  4E1T A;  4FES A;  4FT6 A;  4D65 A;  3LK3 B;  1OPF A;  2Y7S A;  5DL7 A;  2XG6 A;  4FZN A;  2W80 C;  2LHF A;  1MPF A;  3SYS A;  4QQ1 A;  1ORM A;  4E1S A;  2M07 A;  3LK4 2;  1E54 A;  3SY9 A;  4D5U A;  4O3X B;  2YPV A;  1ZHY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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