3UU2A

Salmonella typhi osmoporin(ompc):an outer membrane protein
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
357
structure length
298
Chain Sequence
b'AEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIGFKGETQVNDQLTGYGQWEYQIQGNQTEGSNDSWTRVAFAGLKFADAGSFDYGRNYGVTYDVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGLVDGLDFALQYQGKGDGYGGSLTYAIGEGFSVGGAITTSKATVYTGGLKYDANNIYLAAQYSQTYAQNFEVVAQYQFDFGLRPSVAYLQSKGKDISNGYGASYGDQDIVKYVDVGATYYFNKNMSTYVDYKINLLDKNDFTRDAGINTDDIVALGLVYQF'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Outer membrane protein OmpC from Salmonella typhi.
rcsb
molecule keywords Outer membrane protein C
source organism Salmonella enterica subsp. enterica serovar typhimurium
molecule tags Membrane protein
total genus 65
structure length 298
sequence length 357
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2011-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3uu2A00
4FT6A 1MPFA 4FSOA 4FMSA 3JTYA 3VY9X 2PORA 3SY9A 4JFBA 2XE2A 4BUMX 4KR4A 2XE3A 1GFMA 1H6S1 3VY8X 2Y2XA 3UPGA 3NSGA 4FRXA 3EMNX 3SYBA 4D5UA 2J4UP 3A2SX 2FGRA 1PRNA 3HWBA 1GFOA 4GCSA 2XE1A 5PRNA 2O4VA 4KR8A 5DL8A 4FRTA 3POQA 4AUIA 1BH3A 1BT9A 3O0EA 4C69X 3PORA 1GFNA 1GFQA 3K19A 1HXXA 2Y0HA 3VZWX 4GCQA 4LSEA 3FYXA 3HW9A 2PRNA 4D64A 4RJXA 7PRNA 3PRNA 4GCPA 2Y0KA 1PHOA 2XG6A 4FSPA 1E54A 1HXUA 3T20A 5JDPA 1OPFA 3SY7A 3SZDA 3WI5A 1GFPA 2K4TA 1OSMA 1HXTA 3SZVA 2Y0LA 4LSIA 5DL5A 6PRNA 2ZLDA 4D65A 2QTKA 3SYSA 2ZFGA 2ODJA 2OMFA 4KRAA 8PRNA 2J1NA 5FVNA 3WI4A 5DL6A 3UU2A 3VZTX 5DL7A 3T24A 4RJWA 3POXA 2FGQX 2XE5A 4LSFA 4FOZA 3T0SA 3VZUX 3POUA 4LSHA
chains in the Genus database with same CATH superfamily
4FT6A 3DZMA 4K3CA 3V8UA 4AFKA 3AA1B 4RLCA 5B5EO 4N75A 1MPFA 1Q9GA 4FSOA 4FMSA 4N59A 3JTYA 3VY9X 3WU2O 2KDYA 2X27X 4O4XA 2K0LA 2PORA 4FZMA 3SY9A 3QRCA 4FZNA 3AAAA 4AKRB 1ZHWA 2JMMA 4G76A 1BXWA 2R4NA 2F1TA 2XE2A 4JFBA 4KR4A 2XE3A 4AYMC 4BUMX 5G38A 3DWOX 1GFMA 2KXPA 4IL6O 4O4UA 4AYID 1H6S1 5B66O 5G39A 3VY8X 3AA0A 4RLBA 2Y2XA 4AZLA 3UPGA 3AA7A 2WJQA 4F4BA 3AAEB 5GV0A 3LK3A 1ZHYA 3NSGA 4AYDC 4FRXA 4JCHA 3EMNX 3SYBA 1QJPA 3A0BO 1QJ9A 2KZ7B 4D5UA 4B61A 2J4UP 1T1LA 1T16A 3DA3A 3AA6B 4O3ZA 5D5DA 3A2SX 3PQUA 3A0HO 4FZLA 2M06A 2FGRA 4PJ0O 1PRNA 2F1CX 2R4PA 2WJRA 3HWBA 1GFOA 2M07A 4GCSA 2XE1A 5PRNA 2O4VA 4O3XB 4E1SA 4KR8A 3DA4A 4O3WA 5DL8A 4XNKA 2MHLA 3AA7B 4FRTA 3POQA 4AUIA 4GF4A 2WVPA 1BH3A 2AXTO 2ERVA 4O49A 1BT9A 3O0EA 4GHBA 3LK42 4C69X 4C4VA 1QJ8A 2W81C 3PORA 1GFNA 1MM5A 5E79O 5T5FA 2YPVA 4E1TA 1GFQA 3K19A 1HXXA 2X9KA 2Y0HA 5EE2A 2XTRA 1YS5A 1IZNA 2GE4A 3GP6A 4GCQA 4LSEA 4O3YA 3VZWX 4CTDA 5AFUL 3PGRA 2LFUA 3FYXA 3HW9A 1G90A 3AAAB 2LHFA 1ZHTA 3LK2A 2PRNA 4D64A 4RJXA 2IWVA 7PRNA 3PRNA 2W80C 2XMXA 4N58A 2KXPB 3RBHA 3C5OA 4GCPA 3BRZA 2R88A 4PUXA 2Y0KA 3AA0B 3JCUO 1PHOA 2MNHA 2R8AA 2XG6A 2YNKA 3DWNA 3PGUA 1ZHZA 3PGSA 3KZIO 1E54A 1S5LO 4FSPA 5GTIO 2Y7SA 3LK3B 4G75A 4FQEA 3VE2A 3BS0A 4AYNA 3QRAA 5G3AA 5AFUK 1HXUA 4FUVA 5G26A 5JDPA 5GTHO 1OPFA 3T20A 5KAIO 3SY7A 5ADXL 4RL9A 2N2MA 3SZDA 3WI5A 1MM4A 1GFPA 2R4OA 5TISO 4AKMA 2K4TA 2R4LA 1OSMA 5H2FO 1Q9FA 1HXTA 4FESA 3SZVA 4C00A 2Y0LA 4K3BA 4LSIA 5DL5A 4Z3TA 2KZ7A 6PRNA 2XTQA 2R89A 2F1VA 1THQA 2ZLDA 3HOLA 4D65A 1P4TA 4XNLA 3LK41 4PR7A 2QTKA 3AA6A 3SYSA 5ADXK 2IWWA 4QQ1A 3AA1A 3G7GA 4N74A 2ZFGA 2ODJA 2OMFA 2KC0A 4KRAA 4AKRA 8PRNA 3KVDD 4C4VB 5IYUA 4UB6O 2J1NA 5FVNA 4UB8O 3HOEA 3WI4A 5DL6A 3TZGA 1ORMA 3PF1A 3BRYA 5DL7A 3T24A 3UU2A 3VZTX 4RJWA 3PQSA 3POXA 3UAQA 2JQYA 3VE1A 1IZNB 2FGQX 2XE5A 4AYEC 3AAEA 3NJTA 4FOZA 4LSFA 3T0SA 5KAFO 3VZUX 2N2LA 4U9CA 1ZHXA 3POUA 3LK2B 4LSHA
chains in the Genus database with same CATH topology
4FT6A 4AFKA 3V8UA 3AA1B 4RLCA 1MPFA 1Q9GA 4FSOA 4FMSA 4N59A 3JTYA 3VY9X 2KDYA 2X27X 4O4XA 2K0LA 2PORA 4FZMA 3SY9A 3QRCA 4FZNA 3AAAA 4AKRB 1ZHWA 2JMMA 4G76A 1BXWA 4JFBA 2F1TA 2XE2A 4KR4A 4AYMC 2XE3A 4BUMX 4O4UA 1GFMA 2KXPA 4AYID 1H6S1 3VY8X 3AA0A 4RLBA 2Y2XA 4AZLA 3UPGA 3AA7A 4F4BA 3AAEB 5GV0A 3LK3A 1ZHYA 3NSGA 4AYDC 4FRXA 4JCHA 3EMNX 3SYBA 1QJPA 1QJ9A 2KZ7B 4D5UA 4B61A 2J4UP 3DA3A 3AA6B 4O3ZA 5D5DA 3A2SX 3PQUA 4FZLA 2M06A 2FGRA 1PRNA 3HWBA 1GFOA 2M07A 4GCSA 2XE1A 5PRNA 2O4VA 4O3XB 4E1SA 4KR8A 3DA4A 4O3WA 5DL8A 4XNKA 2MHLA 3AA7B 4FRTA 3POQA 4AUIA 4GF4A 1BH3A 2ERVA 4O49A 1BT9A 3O0EA 4GHBA 3LK42 4C69X 1QJ8A 2W81C 3PORA 1GFNA 1MM5A 2YPVA 4E1TA 1GFQA 3K19A 1HXXA 2Y0HA 5EE2A 2XTRA 1YS5A 1IZNA 2GE4A 3GP6A 4GCQA 4LSEA 4O3YA 3VZWX 5AFUL 2LFUA 3FYXA 3HW9A 1G90A 3AAAB 2LHFA 1ZHTA 3LK2A 2PRNA 4D64A 4RJXA 7PRNA 3PRNA 2W80C 2XMXA 4N58A 2KXPB 3RBHA 3C5OA 4GCPA 4PUXA 2Y0KA 3AA0B 1PHOA 2MNHA 2XG6A 2YNKA 4FSPA 5T5FA 1ZHZA 3TZGA 1E54A 4AYNA 3VE2A 2Y7SA 3LK3B 4G75A 3QRAA 5AFUK 1HXUA 4FUVA 5G26A 5JDPA 3T20A 1OPFA 3SY7A 5ADXL 4RL9A 2N2MA 3SZDA 3WI5A 1MM4A 1GFPA 4AKMA 2K4TA 1OSMA 1Q9FA 1HXTA 4FESA 3SZVA 4Z3TA 2Y0LA 4LSIA 5DL5A 2KZ7A 6PRNA 2XTQA 2F1VA 1THQA 2ZLDA 3HOLA 4D65A 1P4TA 4XNLA 3LK41 2QTKA 3AA6A 3SYSA 5ADXK 4QQ1A 3AA1A 3G7GA 2ZFGA 2ODJA 2OMFA 2KC0A 4KRAA 4AKRA 8PRNA 3KVDD 5IYUA 2J1NA 5FVNA 3HOEA 3WI4A 5DL6A 3UU2A 1ORMA 3VZTX 5DL7A 3T24A 4RJWA 3PQSA 3POXA 3UAQA 3VE1A 1IZNB 2FGQX 2XE5A 4AYEC 3AAEA 4FOZA 4LSFA 3T0SA 3VZUX 2N2LA 4U9CA 1ZHXA 3POUA 3LK2B 4LSHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FT6 A;  1MPF A;  4FSO A;  4FMS A;  3JTY A;  3VY9 X;  2POR A;  3SY9 A;  4JFB A;  2XE2 A;  4BUM X;  4KR4 A;  2XE3 A;  1GFM A;  1H6S 1;  3VY8 X;  2Y2X A;  3UPG A;  3NSG A;  4FRX A;  3EMN X;  3SYB A;  4D5U A;  2J4U P;  3A2S X;  2FGR A;  1PRN A;  3HWB A;  1GFO A;  4GCS A;  2XE1 A;  5PRN A;  2O4V A;  4KR8 A;  5DL8 A;  4FRT A;  3POQ A;  4AUI A;  1BH3 A;  1BT9 A;  3O0E A;  4C69 X;  3POR A;  1GFN A;  1GFQ A;  3K19 A;  1HXX A;  2Y0H A;  3VZW X;  4GCQ A;  4LSE A;  3FYX A;  3HW9 A;  2PRN A;  4D64 A;  4RJX A;  7PRN A;  3PRN A;  4GCP A;  2Y0K A;  1PHO A;  2XG6 A;  4FSP A;  1E54 A;  1HXU A;  3T20 A;  5JDP A;  1OPF A;  3SY7 A;  3SZD A;  3WI5 A;  1GFP A;  2K4T A;  1OSM A;  1HXT A;  3SZV A;  2Y0L A;  4LSI A;  5DL5 A;  6PRN A;  2ZLD A;  4D65 A;  2QTK A;  3SYS A;  2ZFG A;  2ODJ A;  2OMF A;  4KRA A;  8PRN A;  2J1N A;  5FVN A;  3WI4 A;  5DL6 A;  3UU2 A;  3VZT X;  5DL7 A;  3T24 A;  4RJW A;  3POX A;  2FGQ X;  2XE5 A;  4LSF A;  4FOZ A;  3T0S A;  3VZU X;  3POU A;  4LSH A; 
#chains in the Genus database with same CATH topology
 4FT6 A;  3DZM A;  4K3C A;  3V8U A;  4AFK A;  3AA1 B;  4RLC A;  5B5E O;  4N75 A;  1MPF A;  1Q9G A;  4FSO A;  4FMS A;  4N59 A;  3JTY A;  3VY9 X;  3WU2 O;  2KDY A;  2X27 X;  4O4X A;  2K0L A;  2POR A;  4FZM A;  3SY9 A;  3QRC A;  4FZN A;  3AAA A;  4AKR B;  1ZHW A;  2JMM A;  4G76 A;  1BXW A;  2R4N A;  2F1T A;  2XE2 A;  4JFB A;  4KR4 A;  2XE3 A;  4AYM C;  4BUM X;  5G38 A;  3DWO X;  1GFM A;  2KXP A;  4IL6 O;  4O4U A;  4AYI D;  1H6S 1;  5B66 O;  5G39 A;  3VY8 X;  3AA0 A;  4RLB A;  2Y2X A;  4AZL A;  3UPG A;  3AA7 A;  2WJQ A;  4F4B A;  3AAE B;  5GV0 A;  3LK3 A;  1ZHY A;  3NSG A;  4AYD C;  4FRX A;  4JCH A;  3EMN X;  3SYB A;  1QJP A;  3A0B O;  1QJ9 A;  2KZ7 B;  4D5U A;  4B61 A;  2J4U P;  1T1L A;  1T16 A;  3DA3 A;  3AA6 B;  4O3Z A;  5D5D A;  3A2S X;  3PQU A;  3A0H O;  4FZL A;  2M06 A;  2FGR A;  4PJ0 O;  1PRN A;  2F1C X;  2R4P A;  2WJR A;  3HWB A;  1GFO A;  2M07 A;  4GCS A;  2XE1 A;  5PRN A;  2O4V A;  4O3X B;  4E1S A;  4KR8 A;  3DA4 A;  4O3W A;  5DL8 A;  4XNK A;  2MHL A;  3AA7 B;  4FRT A;  3POQ A;  4AUI A;  4GF4 A;  2WVP A;  1BH3 A;  2AXT O;  2ERV A;  4O49 A;  1BT9 A;  3O0E A;  4GHB A;  3LK4 2;  4C69 X;  4C4V A;  1QJ8 A;  2W81 C;  3POR A;  1GFN A;  1MM5 A;  5E79 O;  5T5F A;  2YPV A;  4E1T A;  1GFQ A;  3K19 A;  1HXX A;  2X9K A;  2Y0H A;  5EE2 A;  2XTR A;  1YS5 A;  1IZN A;  2GE4 A;  3GP6 A;  4GCQ A;  4LSE A;  4O3Y A;  3VZW X;  4CTD A;  5AFU L;  3PGR A;  2LFU A;  3FYX A;  3HW9 A;  1G90 A;  3AAA B;  2LHF A;  1ZHT A;  3LK2 A;  2PRN A;  4D64 A;  4RJX A;  2IWV A;  7PRN A;  3PRN A;  2W80 C;  2XMX A;  4N58 A;  2KXP B;  3RBH A;  3C5O A;  4GCP A;  3BRZ A;  2R88 A;  4PUX A;  2Y0K A;  3AA0 B;  3JCU O;  1PHO A;  2MNH A;  2R8A A;  2XG6 A;  2YNK A;  3DWN A;  3PGU A;  1ZHZ A;  3PGS A;  3KZI O;  1E54 A;  1S5L O;  4FSP A;  5GTI O;  2Y7S A;  3LK3 B;  4G75 A;  4FQE A;  3VE2 A;  3BS0 A;  4AYN A;  3QRA A;  5G3A A;  5AFU K;  1HXU A;  4FUV A;  5G26 A;  5JDP A;  5GTH O;  1OPF A;  3T20 A;  5KAI O;  3SY7 A;  5ADX L;  4RL9 A;  2N2M A;  3SZD A;  3WI5 A;  1MM4 A;  1GFP A;  2R4O A;  5TIS O;  4AKM A;  2K4T A;  2R4L A;  1OSM A;  5H2F O;  1Q9F A;  1HXT A;  4FES A;  3SZV A;  4C00 A;  2Y0L A;  4K3B A;  4LSI A;  5DL5 A;  4Z3T A;  2KZ7 A;  6PRN A;  2XTQ A;  2R89 A;  2F1V A;  1THQ A;  2ZLD A;  3HOL A;  4D65 A;  1P4T A;  4XNL A;  3LK4 1;  4PR7 A;  2QTK A;  3AA6 A;  3SYS A;  5ADX K;  2IWW A;  4QQ1 A;  3AA1 A;  3G7G A;  4N74 A;  2ZFG A;  2ODJ A;  2OMF A;  2KC0 A;  4KRA A;  4AKR A;  8PRN A;  3KVD D;  4C4V B;  5IYU A;  4UB6 O;  2J1N A;  5FVN A;  4UB8 O;  3HOE A;  3WI4 A;  5DL6 A;  3TZG A;  1ORM A;  3PF1 A;  3BRY A;  5DL7 A;  3T24 A;  3UU2 A;  3VZT X;  4RJW A;  3PQS A;  3POX A;  3UAQ A;  2JQY A;  3VE1 A;  1IZN B;  2FGQ X;  2XE5 A;  4AYE C;  3AAE A;  3NJT A;  4FOZ A;  4LSF A;  3T0S A;  5KAF O;  3VZU X;  2N2L A;  4U9C A;  1ZHX A;  3POU A;  3LK2 B;  4LSH A; 
#chains in the Genus database with same CATH homology
 4FT6 A;  4AFK A;  3V8U A;  3AA1 B;  4RLC A;  1MPF A;  1Q9G A;  4FSO A;  4FMS A;  4N59 A;  3JTY A;  3VY9 X;  2KDY A;  2X27 X;  4O4X A;  2K0L A;  2POR A;  4FZM A;  3SY9 A;  3QRC A;  4FZN A;  3AAA A;  4AKR B;  1ZHW A;  2JMM A;  4G76 A;  1BXW A;  4JFB A;  2F1T A;  2XE2 A;  4KR4 A;  4AYM C;  2XE3 A;  4BUM X;  4O4U A;  1GFM A;  2KXP A;  4AYI D;  1H6S 1;  3VY8 X;  3AA0 A;  4RLB A;  2Y2X A;  4AZL A;  3UPG A;  3AA7 A;  4F4B A;  3AAE B;  5GV0 A;  3LK3 A;  1ZHY A;  3NSG A;  4AYD C;  4FRX A;  4JCH A;  3EMN X;  3SYB A;  1QJP A;  1QJ9 A;  2KZ7 B;  4D5U A;  4B61 A;  2J4U P;  3DA3 A;  3AA6 B;  4O3Z A;  5D5D A;  3A2S X;  3PQU A;  4FZL A;  2M06 A;  2FGR A;  1PRN A;  3HWB A;  1GFO A;  2M07 A;  4GCS A;  2XE1 A;  5PRN A;  2O4V A;  4O3X B;  4E1S A;  4KR8 A;  3DA4 A;  4O3W A;  5DL8 A;  4XNK A;  2MHL A;  3AA7 B;  4FRT A;  3POQ A;  4AUI A;  4GF4 A;  1BH3 A;  2ERV A;  4O49 A;  1BT9 A;  3O0E A;  4GHB A;  3LK4 2;  4C69 X;  1QJ8 A;  2W81 C;  3POR A;  1GFN A;  1MM5 A;  2YPV A;  4E1T A;  1GFQ A;  3K19 A;  1HXX A;  2Y0H A;  5EE2 A;  2XTR A;  1YS5 A;  1IZN A;  2GE4 A;  3GP6 A;  4GCQ A;  4LSE A;  4O3Y A;  3VZW X;  5AFU L;  2LFU A;  3FYX A;  3HW9 A;  1G90 A;  3AAA B;  2LHF A;  1ZHT A;  3LK2 A;  2PRN A;  4D64 A;  4RJX A;  7PRN A;  3PRN A;  2W80 C;  2XMX A;  4N58 A;  2KXP B;  3RBH A;  3C5O A;  4GCP A;  4PUX A;  2Y0K A;  3AA0 B;  1PHO A;  2MNH A;  2XG6 A;  2YNK A;  4FSP A;  5T5F A;  1ZHZ A;  3TZG A;  1E54 A;  4AYN A;  3VE2 A;  2Y7S A;  3LK3 B;  4G75 A;  3QRA A;  5AFU K;  1HXU A;  4FUV A;  5G26 A;  5JDP A;  3T20 A;  1OPF A;  3SY7 A;  5ADX L;  4RL9 A;  2N2M A;  3SZD A;  3WI5 A;  1MM4 A;  1GFP A;  4AKM A;  2K4T A;  1OSM A;  1Q9F A;  1HXT A;  4FES A;  3SZV A;  4Z3T A;  2Y0L A;  4LSI A;  5DL5 A;  2KZ7 A;  6PRN A;  2XTQ A;  2F1V A;  1THQ A;  2ZLD A;  3HOL A;  4D65 A;  1P4T A;  4XNL A;  3LK4 1;  2QTK A;  3AA6 A;  3SYS A;  5ADX K;  4QQ1 A;  3AA1 A;  3G7G A;  2ZFG A;  2ODJ A;  2OMF A;  2KC0 A;  4KRA A;  4AKR A;  8PRN A;  3KVD D;  5IYU A;  2J1N A;  5FVN A;  3HOE A;  3WI4 A;  5DL6 A;  3UU2 A;  1ORM A;  3VZT X;  5DL7 A;  3T24 A;  4RJW A;  3PQS A;  3POX A;  3UAQ A;  3VE1 A;  1IZN B;  2FGQ X;  2XE5 A;  4AYE C;  3AAE A;  4FOZ A;  4LSF A;  3T0S A;  3VZU X;  2N2L A;  4U9C A;  1ZHX A;  3POU A;  3LK2 B;  4LSH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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