3UU2A

Salmonella typhi osmoporin(ompc):an outer membrane protein
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
357
structure length
298
Chain Sequence
AEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIGFKGETQVNDQLTGYGQWEYQIQGNQTEGSNDSWTRVAFAGLKFADAGSFDYGRNYGVTYDVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGLVDGLDFALQYQGKGDGYGGSLTYAIGEGFSVGGAITTSKATVYTGGLKYDANNIYLAAQYSQTYAQNFEVVAQYQFDFGLRPSVAYLQSKGKDISNGYGASYGDQDIVKYVDVGATYYFNKNMSTYVDYKINLLDKNDFTRDAGINTDDIVALGLVYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
source organism Salmonella enterica subsp. enterica serovar typhimurium
publication title Crystal Structure of Outer membrane protein OmpC from Salmonella typhi.
rcsb
molecule keywords Outer membrane protein C
total genus 65
structure length 298
sequence length 357
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2011-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3uu2A00
1BT9A 4FRXA 1GFOA 1GFNA 5PRNA 2ZLDA 2O4VA 4C69X 3VY9X 3HWBA 3SYSA 4KR4A 5DL6A 1OSMA 4GCQA 2FGRA 2Y0HA 5DL8A 3JTYA 1HXUA 1OPFA 2XE3A 2XE5A 4D5UA 1BH3A 3SYBA 3PRNA 3SY7A 3POQA 5JDPA 4LSHA 4FT6A 4RJXA 1HXXA 4D64A 4KR8A 4D65A 4GCPA 2PRNA 1E54A 2XE2A 2PORA 3HW9A 3POUA 2XE1A 3EMNX 2OMFA 3K19A 4FSPA 1MPFA 3WI5A 1GFMA 4LSEA 2XG6A 4FMSA 2Y0KA 4GCSA 3WI4A 1H6S1 5DL7A 1PHOA 1HXTA 2K4TA 4JFBA 4FRTA 2J1NA 3VZUX 3VZTX 2FGQX 8PRNA 3T24A 3T20A 2QTKA 1PRNA 6PRNA 3UU2A 3PORA 3O0EA 3FYXA 3SY9A 4RJWA 4LSFA 3UPGA 7PRNA 2ODJA 3NSGA 3A2SX 2Y2XA 1GFPA 3T0SA 2J4UP 5FVNA 5DL5A 3SZVA 1GFQA 2Y0LA 4KRAA 4FOZA 3SZDA 2ZFGA 3VZWX 4BUMX 4FSOA 3VY8X 4AUIA 4LSIA 3POXA
chains in the Genus database with same CATH superfamily
2R4LA 1ZHWA 1BT9A 4FRXA 1GFOA 1S5LO 4AKRA 2WJQA 1GFNA 5H2FO 1IZNA 5PRNA 3DZMA 2N2MA 2IWWA 4Z3TA 2ZLDA 2LHFA 2O4VA 4N59A 3HWBA 3VY9X 4C69X 4E1TA 4O3XB 3TZGA 3SYSA 2GE4A 2YNKA 4AFKA 4FZLA 4KR4A 4RLCA 4E1SA 3AA6B 6PRNA 1ZHYA 1THQA 5DL6A 3LK2B 3DWNA 1OSMA 3AA7B 4GCQA 2FGRA 2Y0HA 1YS5A 2R88A 5DL8A 3JTYA 4XNLA 5B66O 1HXUA 1OPFA 2XE3A 2KZ7B 5KAFO 2XE5A 5B5EO 3G7GA 4D5UA 5GV0A 5ADXL 3AAAB 1BH3A 2W81C 4FESA 4IL6O 3SYBA 2AXTO 4UB6O 3PF1A 3GP6A 3LK3A 3AAEB 3PRNA 4FZMA 3SY7A 2R4OA 4AYEC 2IWVA 2X27X 3POQA 4C4VA 5JDPA 4LSHA 2N2LA 1BXWA 1Q9GA 4FT6A 4XNKA 4RJXA 1HXXA 4D64A 3LK41 4KR8A 2YPVA 4D65A 1ORMA 4GHBA 1ZHTA 4GCPA 5GTHO 2PRNA 3DA4A 2MNHA 5EE2A 3AA1A 2XMXA 1E54A 2XE2A 2PORA 3HW9A 3POUA 1G90A 2XE1A 3EMNX 2OMFA 3K19A 4G76A 2R8AA 3A0BO 4FSPA 1MPFA 2XTQA 5KAIO 3WI5A 1GFMA 4K3CA 2R4PA 4LSEA 4UB8O 2XG6A 2KXPB 3KVDD 3WU2O 5G39A 3LK42 4FMSA 3PGSA 2Y0KA 1P4TA 4GCSA 3AA0B 4U9CA 3WI4A 1H6S1 5DL7A 2XTRA 4N75A 3DA3A 5ADXK 1MM5A 4O49A 1PHOA 5GTIO 1HXTA 2K4TA 4JFBA 4N74A 3PGRA 1ZHZA 2F1VA 4N58A 2K0LA 2LFUA 4PUXA 4AYNA 1ZHXA 3AA6A 4FRTA 4GF4A 4AYID 4O3YA 1T1LA 4CTDA 3LK2A 4FUVA 5G26A 4AYMC 5AFUL 3T20A 3AA7A 2R89A 1QJPA 3V8UA 2W80C 4AKRB 1IZNB 2J1NA 5AFUK 2Y7SA 4O3WA 3BRZA 3VZUX 3VZTX 2KZ7A 2JMMA 4AZLA 2FGQX 1QJ8A 2KC0A 3AAAA 3T24A 8PRNA 2QTKA 3QRCA 1PRNA 4FZNA 4JCHA 4O4XA 4PJ0O 2M06A 3KZIO 2F1TA 4O4UA 3UU2A 3VE2A 4FQEA 3PORA 3O0EA 3FYXA 2JQYA 2WJRA 4K3BA 5TISO 3AAEA 5E79O 3SY9A 3BRYA 4AKMA 4C00A 4RJWA 4RLBA 3HOEA 4LSFA 5G3AA 3UPGA 7PRNA 2ODJA 3NSGA 3PGUA 3VE1A 3PQSA 1QJ9A 1T16A 4F4BA 4PR7A 5G38A 2M07A 5IYUA 3A2SX 2Y2XA 1GFPA 2KDYA 2MHLA 3BS0A 4O3ZA 5T5FA 3T0SA 2F1CX 3UAQA 3LK3B 3NJTA 4G75A 2J4UP 3QRAA 3HOLA 5FVNA 1MM4A 5DL5A 3SZVA 3RBHA 4C4VB 1GFQA 3JCUO 4RL9A 2Y0LA 3C5OA 4KRAA 4FOZA 3SZDA 2ZFGA 4B61A 3DWOX 4QQ1A 2KXPA 3VZWX 3PQUA 4BUMX 4FSOA 3VY8X 2ERVA 4AUIA 3A0HO 4AYDC 2X9KA 3AA0A 2R4NA 2WVPA 4LSIA 3POXA 3AA1B 1Q9FA 5D5DA
chains in the Genus database with same CATH topology
1ZHWA 1BT9A 4FRXA 1GFOA 4AKRA 1GFNA 1IZNA 5PRNA 2N2MA 4Z3TA 2ZLDA 2LHFA 2O4VA 4N59A 3HWBA 3VY9X 4C69X 4E1TA 4O3XB 3TZGA 3SYSA 2GE4A 2YNKA 4AFKA 4FZLA 4KR4A 4RLCA 4E1SA 3AA6B 6PRNA 1ZHYA 1THQA 5DL6A 3LK2B 1OSMA 3AA7B 4GCQA 2FGRA 2Y0HA 1YS5A 5DL8A 3JTYA 4XNLA 1HXUA 1OPFA 2XE3A 2KZ7B 5GV0A 2XE5A 3G7GA 4D5UA 5ADXL 3AAAB 1BH3A 2W81C 4FESA 3SYBA 3GP6A 3LK3A 3AAEB 3PRNA 4FZMA 3SY7A 4AYEC 2X27X 3POQA 5JDPA 4LSHA 2N2LA 1BXWA 1Q9GA 4FT6A 4XNKA 4RJXA 1HXXA 4D64A 3LK41 4KR8A 2YPVA 4D65A 1ORMA 4GHBA 1ZHTA 4GCPA 2PRNA 3DA4A 2MNHA 5EE2A 3AA1A 2XMXA 2XE2A 1E54A 2PORA 3HW9A 3POUA 1G90A 2XE1A 3EMNX 2OMFA 3K19A 4G76A 4FSPA 1MPFA 2XTQA 3WI5A 1GFMA 4LSEA 2XG6A 2KXPB 3KVDD 3LK42 4FMSA 2Y0KA 1P4TA 4GCSA 3AA0B 4U9CA 3WI4A 1H6S1 5DL7A 2XTRA 3DA3A 5ADXK 1MM5A 4O49A 1PHOA 1HXTA 2K4TA 4JFBA 4N58A 1ZHZA 2F1VA 4AYNA 2K0LA 2LFUA 4PUXA 1ZHXA 3AA6A 4FRTA 4GF4A 4AYID 4O3YA 3LK2A 4FUVA 4AYMC 5AFUL 3T20A 3AA7A 3V8UA 1QJPA 4AKRB 2W80C 1IZNB 2J1NA 5AFUK 2Y7SA 4O3WA 3VZUX 3VZTX 2KZ7A 2JMMA 4AZLA 2FGQX 1QJ8A 2KC0A 3AAAA 3T24A 8PRNA 2QTKA 3QRCA 1PRNA 4FZNA 4JCHA 4O4XA 5G26A 2M06A 4O4UA 2F1TA 3UU2A 3VE2A 3PORA 3O0EA 3FYXA 3SY9A 4AKMA 3AAEA 4RJWA 4RLBA 3HOEA 4LSFA 3UPGA 7PRNA 2ODJA 3NSGA 3VE1A 3PQSA 1QJ9A 4F4BA 2M07A 5IYUA 3A2SX 2Y2XA 1GFPA 2KDYA 2MHLA 4O3ZA 5T5FA 3T0SA 3UAQA 3LK3B 4G75A 2J4UP 3QRAA 3HOLA 5FVNA 1MM4A 5DL5A 3SZVA 3RBHA 1GFQA 4RL9A 2Y0LA 3C5OA 4KRAA 4FOZA 3SZDA 2ZFGA 4B61A 4QQ1A 2KXPA 3VZWX 3PQUA 4BUMX 4FSOA 3VY8X 2ERVA 4AUIA 4AYDC 3AA0A 4LSIA 3POXA 3AA1B 1Q9FA 5D5DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BT9 A;  4FRX A;  1GFO A;  1GFN A;  5PRN A;  2ZLD A;  2O4V A;  4C69 X;  3VY9 X;  3HWB A;  3SYS A;  4KR4 A;  5DL6 A;  1OSM A;  4GCQ A;  2FGR A;  2Y0H A;  5DL8 A;  3JTY A;  1HXU A;  1OPF A;  2XE3 A;  2XE5 A;  4D5U A;  1BH3 A;  3SYB A;  3PRN A;  3SY7 A;  3POQ A;  5JDP A;  4LSH A;  4FT6 A;  4RJX A;  1HXX A;  4D64 A;  4KR8 A;  4D65 A;  4GCP A;  2PRN A;  1E54 A;  2XE2 A;  2POR A;  3HW9 A;  3POU A;  2XE1 A;  3EMN X;  2OMF A;  3K19 A;  4FSP A;  1MPF A;  3WI5 A;  1GFM A;  4LSE A;  2XG6 A;  4FMS A;  2Y0K A;  4GCS A;  3WI4 A;  1H6S 1;  5DL7 A;  1PHO A;  1HXT A;  2K4T A;  4JFB A;  4FRT A;  2J1N A;  3VZU X;  3VZT X;  2FGQ X;  8PRN A;  3T24 A;  3T20 A;  2QTK A;  1PRN A;  6PRN A;  3UU2 A;  3POR A;  3O0E A;  3FYX A;  3SY9 A;  4RJW A;  4LSF A;  3UPG A;  7PRN A;  2ODJ A;  3NSG A;  3A2S X;  2Y2X A;  1GFP A;  3T0S A;  2J4U P;  5FVN A;  5DL5 A;  3SZV A;  1GFQ A;  2Y0L A;  4KRA A;  4FOZ A;  3SZD A;  2ZFG A;  3VZW X;  4BUM X;  4FSO A;  3VY8 X;  4AUI A;  4LSI A;  3POX A; 
#chains in the Genus database with same CATH topology
 2R4L A;  1ZHW A;  1BT9 A;  4FRX A;  1GFO A;  1S5L O;  4AKR A;  2WJQ A;  1GFN A;  5H2F O;  1IZN A;  5PRN A;  3DZM A;  2N2M A;  2IWW A;  4Z3T A;  2ZLD A;  2LHF A;  2O4V A;  4N59 A;  3HWB A;  3VY9 X;  4C69 X;  4E1T A;  4O3X B;  3TZG A;  3SYS A;  2GE4 A;  2YNK A;  4AFK A;  4FZL A;  4KR4 A;  4RLC A;  4E1S A;  3AA6 B;  6PRN A;  1ZHY A;  1THQ A;  5DL6 A;  3LK2 B;  3DWN A;  1OSM A;  3AA7 B;  4GCQ A;  2FGR A;  2Y0H A;  1YS5 A;  2R88 A;  5DL8 A;  3JTY A;  4XNL A;  5B66 O;  1HXU A;  1OPF A;  2XE3 A;  2KZ7 B;  5KAF O;  2XE5 A;  5B5E O;  3G7G A;  4D5U A;  5GV0 A;  5ADX L;  3AAA B;  1BH3 A;  2W81 C;  4FES A;  4IL6 O;  3SYB A;  2AXT O;  4UB6 O;  3PF1 A;  3GP6 A;  3LK3 A;  3AAE B;  3PRN A;  4FZM A;  3SY7 A;  2R4O A;  4AYE C;  2IWV A;  2X27 X;  3POQ A;  4C4V A;  5JDP A;  4LSH A;  2N2L A;  1BXW A;  1Q9G A;  4FT6 A;  4XNK A;  4RJX A;  1HXX A;  4D64 A;  3LK4 1;  4KR8 A;  2YPV A;  4D65 A;  1ORM A;  4GHB A;  1ZHT A;  4GCP A;  5GTH O;  2PRN A;  3DA4 A;  2MNH A;  5EE2 A;  3AA1 A;  2XMX A;  1E54 A;  2XE2 A;  2POR A;  3HW9 A;  3POU A;  1G90 A;  2XE1 A;  3EMN X;  2OMF A;  3K19 A;  4G76 A;  2R8A A;  3A0B O;  4FSP A;  1MPF A;  2XTQ A;  5KAI O;  3WI5 A;  1GFM A;  4K3C A;  2R4P A;  4LSE A;  4UB8 O;  2XG6 A;  2KXP B;  3KVD D;  3WU2 O;  5G39 A;  3LK4 2;  4FMS A;  3PGS A;  2Y0K A;  1P4T A;  4GCS A;  3AA0 B;  4U9C A;  3WI4 A;  1H6S 1;  5DL7 A;  2XTR A;  4N75 A;  3DA3 A;  5ADX K;  1MM5 A;  4O49 A;  1PHO A;  5GTI O;  1HXT A;  2K4T A;  4JFB A;  4N74 A;  3PGR A;  1ZHZ A;  2F1V A;  4N58 A;  2K0L A;  2LFU A;  4PUX A;  4AYN A;  1ZHX A;  3AA6 A;  4FRT A;  4GF4 A;  4AYI D;  4O3Y A;  1T1L A;  4CTD A;  3LK2 A;  4FUV A;  5G26 A;  4AYM C;  5AFU L;  3T20 A;  3AA7 A;  2R89 A;  1QJP A;  3V8U A;  2W80 C;  4AKR B;  1IZN B;  2J1N A;  5AFU K;  2Y7S A;  4O3W A;  3BRZ A;  3VZU X;  3VZT X;  2KZ7 A;  2JMM A;  4AZL A;  2FGQ X;  1QJ8 A;  2KC0 A;  3AAA A;  3T24 A;  8PRN A;  2QTK A;  3QRC A;  1PRN A;  4FZN A;  4JCH A;  4O4X A;  4PJ0 O;  2M06 A;  3KZI O;  2F1T A;  4O4U A;  3UU2 A;  3VE2 A;  4FQE A;  3POR A;  3O0E A;  3FYX A;  2JQY A;  2WJR A;  4K3B A;  5TIS O;  3AAE A;  5E79 O;  3SY9 A;  3BRY A;  4AKM A;  4C00 A;  4RJW A;  4RLB A;  3HOE A;  4LSF A;  5G3A A;  3UPG A;  7PRN A;  2ODJ A;  3NSG A;  3PGU A;  3VE1 A;  3PQS A;  1QJ9 A;  1T16 A;  4F4B A;  4PR7 A;  5G38 A;  2M07 A;  5IYU A;  3A2S X;  2Y2X A;  1GFP A;  2KDY A;  2MHL A;  3BS0 A;  4O3Z A;  5T5F A;  3T0S A;  2F1C X;  3UAQ A;  3LK3 B;  3NJT A;  4G75 A;  2J4U P;  3QRA A;  3HOL A;  5FVN A;  1MM4 A;  5DL5 A;  3SZV A;  3RBH A;  4C4V B;  1GFQ A;  3JCU O;  4RL9 A;  2Y0L A;  3C5O A;  4KRA A;  4FOZ A;  3SZD A;  2ZFG A;  4B61 A;  3DWO X;  4QQ1 A;  2KXP A;  3VZW X;  3PQU A;  4BUM X;  4FSO A;  3VY8 X;  2ERV A;  4AUI A;  3A0H O;  4AYD C;  2X9K A;  3AA0 A;  2R4N A;  2WVP A;  4LSI A;  3POX A;  3AA1 B;  1Q9F A;  5D5D A; 
#chains in the Genus database with same CATH homology
 1ZHW A;  1BT9 A;  4FRX A;  1GFO A;  4AKR A;  1GFN A;  1IZN A;  5PRN A;  2N2M A;  4Z3T A;  2ZLD A;  2LHF A;  2O4V A;  4N59 A;  3HWB A;  3VY9 X;  4C69 X;  4E1T A;  4O3X B;  3TZG A;  3SYS A;  2GE4 A;  2YNK A;  4AFK A;  4FZL A;  4KR4 A;  4RLC A;  4E1S A;  3AA6 B;  6PRN A;  1ZHY A;  1THQ A;  5DL6 A;  3LK2 B;  1OSM A;  3AA7 B;  4GCQ A;  2FGR A;  2Y0H A;  1YS5 A;  5DL8 A;  3JTY A;  4XNL A;  1HXU A;  1OPF A;  2XE3 A;  2KZ7 B;  5GV0 A;  2XE5 A;  3G7G A;  4D5U A;  5ADX L;  3AAA B;  1BH3 A;  2W81 C;  4FES A;  3SYB A;  3GP6 A;  3LK3 A;  3AAE B;  3PRN A;  4FZM A;  3SY7 A;  4AYE C;  2X27 X;  3POQ A;  5JDP A;  4LSH A;  2N2L A;  1BXW A;  1Q9G A;  4FT6 A;  4XNK A;  4RJX A;  1HXX A;  4D64 A;  3LK4 1;  4KR8 A;  2YPV A;  4D65 A;  1ORM A;  4GHB A;  1ZHT A;  4GCP A;  2PRN A;  3DA4 A;  2MNH A;  5EE2 A;  3AA1 A;  2XMX A;  2XE2 A;  1E54 A;  2POR A;  3HW9 A;  3POU A;  1G90 A;  2XE1 A;  3EMN X;  2OMF A;  3K19 A;  4G76 A;  4FSP A;  1MPF A;  2XTQ A;  3WI5 A;  1GFM A;  4LSE A;  2XG6 A;  2KXP B;  3KVD D;  3LK4 2;  4FMS A;  2Y0K A;  1P4T A;  4GCS A;  3AA0 B;  4U9C A;  3WI4 A;  1H6S 1;  5DL7 A;  2XTR A;  3DA3 A;  5ADX K;  1MM5 A;  4O49 A;  1PHO A;  1HXT A;  2K4T A;  4JFB A;  4N58 A;  1ZHZ A;  2F1V A;  4AYN A;  2K0L A;  2LFU A;  4PUX A;  1ZHX A;  3AA6 A;  4FRT A;  4GF4 A;  4AYI D;  4O3Y A;  3LK2 A;  4FUV A;  4AYM C;  5AFU L;  3T20 A;  3AA7 A;  3V8U A;  1QJP A;  4AKR B;  2W80 C;  1IZN B;  2J1N A;  5AFU K;  2Y7S A;  4O3W A;  3VZU X;  3VZT X;  2KZ7 A;  2JMM A;  4AZL A;  2FGQ X;  1QJ8 A;  2KC0 A;  3AAA A;  3T24 A;  8PRN A;  2QTK A;  3QRC A;  1PRN A;  4FZN A;  4JCH A;  4O4X A;  5G26 A;  2M06 A;  4O4U A;  2F1T A;  3UU2 A;  3VE2 A;  3POR A;  3O0E A;  3FYX A;  3SY9 A;  4AKM A;  3AAE A;  4RJW A;  4RLB A;  3HOE A;  4LSF A;  3UPG A;  7PRN A;  2ODJ A;  3NSG A;  3VE1 A;  3PQS A;  1QJ9 A;  4F4B A;  2M07 A;  5IYU A;  3A2S X;  2Y2X A;  1GFP A;  2KDY A;  2MHL A;  4O3Z A;  5T5F A;  3T0S A;  3UAQ A;  3LK3 B;  4G75 A;  2J4U P;  3QRA A;  3HOL A;  5FVN A;  1MM4 A;  5DL5 A;  3SZV A;  3RBH A;  1GFQ A;  4RL9 A;  2Y0L A;  3C5O A;  4KRA A;  4FOZ A;  3SZD A;  2ZFG A;  4B61 A;  4QQ1 A;  2KXP A;  3VZW X;  3PQU A;  4BUM X;  4FSO A;  3VY8 X;  2ERV A;  4AUI A;  4AYD C;  3AA0 A;  4LSI A;  3POX A;  3AA1 B;  1Q9F A;  5D5D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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