5TISO

Room temperature xfel structure of the native, doubly-illuminated photosystem ii complex
Total Genus 46
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
244
structure length
244
Chain Sequence
QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Photosynthesis
publication title Structure of photosystem II and substrate binding at room temperature.
pubmed doi rcsb
molecule keywords Photosystem II protein D1 1
total genus 46
structure length 244
sequence length 244
chains with identical sequence o
ec nomenclature
pdb deposition date 2016-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF01716 MSP Manganese-stabilising protein / photosystem II polypeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 5tisO01
3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domain 5tisO02
5TISO 3WU2O 5H2FO 5E79O 5B66O 5B5EO 3A0BO 2AXTO 4UB6O 5G38A 5G39A 4UB8O 3A0HO 5GTIO 5GTHO 4IL6O 3JCUO 3KZIO 5G3AA 1S5LO 4PJ0O 5KAFO 5KAIO
chains in the Genus database with same CATH superfamily
4N58A 5TISO 2QTKA 4AKRA 8PRNA 3DWOX 1P4TA 3NSGA 3WU2O 3JTYA 1OPFA 2GE4A 1QJ9A 2Y0LA 3LK2B 4O3XB 3VZUX 1OSMA 2XE5A 2XE1A 5DL5A 5D5DA 4D64A 3A0BO 3VZTX 4K3BA 4JFBA 1HXUA 2AXTO 2XMXA 2K4TA 1ZHZA 2XE2A 3GP6A 1PRNA 4UB6O 2W81C 2ZLDA 1THQA 1BH3A 1T1LA 3HOEA 2JMMA 4JCHA 5T5FA 3SYBA 3AA0A 4KR4A 4AUIA 5G39A 3AA1B 3DZMA 3PF1A 5JDPA 4FZMA 2KC0A 2Y7SA 5FVNA 4IL6O 2LHFA 2KZ7A 4FZLA 3DA4A 4AYDC 2R4PA 3T24A 1BT9A 2ERVA 2N2MA 3AA6A 1GFNA 3HW9A 4O4UA 4PR7A 1ZHWA 3LK3A 4N75A 3T0SA 4FESA 5KAIO 1MPFA 3UU2A 3VY9X 4AZLA 4FMSA 4G75A 4KR8A 5PRNA 4AKMA 3AAEA 3HOLA 3QRCA 4C69X 3PRNA 4G76A 4CTDA 3PQUA 2XTRA 3POUA 5G26A 2M07A 2MNHA 4AKRB 2R4LA 2WJRA 4FRXA 2Y2XA 2O4VA 4N74A 1ZHYA 1Q9FA 1IZNB 2X27X 2KDYA 4RLBA 4B61A 4D65A 2F1TA 4LSIA 4GCPA 3A2SX 3SZVA 4UB8O 2Y0KA 1H6S1 3A0HO 3QRAA 5GTIO 3AA0B 5AFUL 4XNKA 3G7GA 5GTHO 4GHBA 3VE2A 5DL6A 2WVPA 2YPVA 3JCUO 3AAAA 4FRTA 2N2LA 3PGRA 4RL9A 5G3AA 3LK2A 3VE1A 2J4UP 2R4OA 4KRAA 4AYNA 2ZFGA 2ODJA 3T20A 4U9CA 3K19A 4FSPA 4O3ZA 4AYMC 3AA6B 5DL7A 5H2FO 2IWWA 3LK3B 3HWBA 3POXA 5B66O 1ZHXA 4C4VB 4AYID 1GFMA 3WI5A 4RLCA 3AA1A 3EMNX 4LSHA 3SZDA 3DWNA 4Z3TA 1MM4A 2W80C 2KXPA 4N59A 1MM5A 3PGSA 3SY9A 5G38A 2FGRA 5IYUA 1ORMA 3NJTA 4FSOA 2R88A 1E54A 6PRNA 4GF4A 4O49A 4D5UA 1Q9GA 3AA7A 2FGQX 3DA3A 5ADXL 4LSFA 4FT6A 4O4XA 2XTQA 4O3YA 2YNKA 2R4NA 5DL8A 3UAQA 1GFPA 3V8UA 3VY8X 7PRNA 2XE3A 3PQSA 4C00A 3SY7A 4FUVA 4PJ0O 4RJXA 3SYSA 2M06A 2R89A 3AAAB 2KZ7B 4LSEA 5KAFO 4E1TA 2OMFA 5EE2A 4FOZA 3VZWX 2PORA 5E79O 5B5EO 1IZNA 2Y0HA 4GCQA 1GFOA 4FZNA 2WJQA 4QQ1A 2R8AA 2IWVA 2J1NA 1PHOA 3AAEB 3FYXA 1HXTA 5GV0A 1G90A 4XNLA 3BS0A 3C5OA 1HXXA 3LK42 4GCSA 4K3CA 4F4BA 2X9KA 2JQYA 2K0LA 2KXPB 2LFUA 1QJPA 3KVDD 1QJ8A 3WI4A 4AYEC 2F1CX 3RBHA 3PORA 3POQA 3UPGA 3BRZA 4O3WA 4BUMX 1GFQA 2XG6A 2MHLA 3PGUA 3BRYA 3TZGA 4AFKA 4FQEA 1ZHTA 4E1SA 3AA7B 3KZIO 4PUXA 3O0EA 1S5LO 2PRNA 1YS5A 4C4VA 5AFUK 5ADXK 3LK41 1T16A 2F1VA 4RJWA 1BXWA
chains in the Genus database with same CATH topology
5TISO 3WU2O 5H2FO 5E79O 5B66O 5B5EO 3A0BO 2AXTO 4UB6O 5G38A 5G39A 4UB8O 3A0HO 5GTIO 5GTHO 4IL6O 3JCUO 3KZIO 5G3AA 1S5LO 4PJ0O 5KAFO 5KAIO
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5TIS O;  3WU2 O;  5H2F O;  5E79 O;  5B66 O;  5B5E O;  3A0B O;  2AXT O;  4UB6 O;  5G38 A;  5G39 A;  4UB8 O;  3A0H O;  5GTI O;  5GTH O;  4IL6 O;  3JCU O;  3KZI O;  5G3A A;  1S5L O;  4PJ0 O;  5KAF O;  5KAI O; 
#chains in the Genus database with same CATH topology
 4N58 A;  5TIS O;  2QTK A;  4AKR A;  8PRN A;  3DWO X;  1P4T A;  3NSG A;  3WU2 O;  3JTY A;  1OPF A;  2GE4 A;  1QJ9 A;  2Y0L A;  3LK2 B;  4O3X B;  3VZU X;  1OSM A;  2XE5 A;  2XE1 A;  5DL5 A;  5D5D A;  4D64 A;  3A0B O;  3VZT X;  4K3B A;  4JFB A;  1HXU A;  2AXT O;  2XMX A;  2K4T A;  1ZHZ A;  2XE2 A;  3GP6 A;  1PRN A;  4UB6 O;  2W81 C;  2ZLD A;  1THQ A;  1BH3 A;  1T1L A;  3HOE A;  2JMM A;  4JCH A;  5T5F A;  3SYB A;  3AA0 A;  4KR4 A;  4AUI A;  5G39 A;  3AA1 B;  3DZM A;  3PF1 A;  5JDP A;  4FZM A;  2KC0 A;  2Y7S A;  5FVN A;  4IL6 O;  2LHF A;  2KZ7 A;  4FZL A;  3DA4 A;  4AYD C;  2R4P A;  3T24 A;  1BT9 A;  2ERV A;  2N2M A;  3AA6 A;  1GFN A;  3HW9 A;  4O4U A;  4PR7 A;  1ZHW A;  3LK3 A;  4N75 A;  3T0S A;  4FES A;  5KAI O;  1MPF A;  3UU2 A;  3VY9 X;  4AZL A;  4FMS A;  4G75 A;  4KR8 A;  5PRN A;  4AKM A;  3AAE A;  3HOL A;  3QRC A;  4C69 X;  3PRN A;  4G76 A;  4CTD A;  3PQU A;  2XTR A;  3POU A;  5G26 A;  2M07 A;  2MNH A;  4AKR B;  2R4L A;  2WJR A;  4FRX A;  2Y2X A;  2O4V A;  4N74 A;  1ZHY A;  1Q9F A;  1IZN B;  2X27 X;  2KDY A;  4RLB A;  4B61 A;  4D65 A;  2F1T A;  4LSI A;  4GCP A;  3A2S X;  3SZV A;  4UB8 O;  2Y0K A;  1H6S 1;  3A0H O;  3QRA A;  5GTI O;  3AA0 B;  5AFU L;  4XNK A;  3G7G A;  5GTH O;  4GHB A;  3VE2 A;  5DL6 A;  2WVP A;  2YPV A;  3JCU O;  3AAA A;  4FRT A;  2N2L A;  3PGR A;  4RL9 A;  5G3A A;  3LK2 A;  3VE1 A;  2J4U P;  2R4O A;  4KRA A;  4AYN A;  2ZFG A;  2ODJ A;  3T20 A;  4U9C A;  3K19 A;  4FSP A;  4O3Z A;  4AYM C;  3AA6 B;  5DL7 A;  5H2F O;  2IWW A;  3LK3 B;  3HWB A;  3POX A;  5B66 O;  1ZHX A;  4C4V B;  4AYI D;  1GFM A;  3WI5 A;  4RLC A;  3AA1 A;  3EMN X;  4LSH A;  3SZD A;  3DWN A;  4Z3T A;  1MM4 A;  2W80 C;  2KXP A;  4N59 A;  1MM5 A;  3PGS A;  3SY9 A;  5G38 A;  2FGR A;  5IYU A;  1ORM A;  3NJT A;  4FSO A;  2R88 A;  1E54 A;  6PRN A;  4GF4 A;  4O49 A;  4D5U A;  1Q9G A;  3AA7 A;  2FGQ X;  3DA3 A;  5ADX L;  4LSF A;  4FT6 A;  4O4X A;  2XTQ A;  4O3Y A;  2YNK A;  2R4N A;  5DL8 A;  3UAQ A;  1GFP A;  3V8U A;  3VY8 X;  7PRN A;  2XE3 A;  3PQS A;  4C00 A;  3SY7 A;  4FUV A;  4PJ0 O;  4RJX A;  3SYS A;  2M06 A;  2R89 A;  3AAA B;  2KZ7 B;  4LSE A;  5KAF O;  4E1T A;  2OMF A;  5EE2 A;  4FOZ A;  3VZW X;  2POR A;  5E79 O;  5B5E O;  1IZN A;  2Y0H A;  4GCQ A;  1GFO A;  4FZN A;  2WJQ A;  4QQ1 A;  2R8A A;  2IWV A;  2J1N A;  1PHO A;  3AAE B;  3FYX A;  1HXT A;  5GV0 A;  1G90 A;  4XNL A;  3BS0 A;  3C5O A;  1HXX A;  3LK4 2;  4GCS A;  4K3C A;  4F4B A;  2X9K A;  2JQY A;  2K0L A;  2KXP B;  2LFU A;  1QJP A;  3KVD D;  1QJ8 A;  3WI4 A;  4AYE C;  2F1C X;  3RBH A;  3POR A;  3POQ A;  3UPG A;  3BRZ A;  4O3W A;  4BUM X;  1GFQ A;  2XG6 A;  2MHL A;  3PGU A;  3BRY A;  3TZG A;  4AFK A;  4FQE A;  1ZHT A;  4E1S A;  3AA7 B;  3KZI O;  4PUX A;  3O0E A;  1S5L O;  2PRN A;  1YS5 A;  4C4V A;  5AFU K;  5ADX K;  3LK4 1;  1T16 A;  2F1V A;  4RJW A;  1BXW A; 
#chains in the Genus database with same CATH homology
 5TIS O;  3WU2 O;  5H2F O;  5E79 O;  5B66 O;  5B5E O;  3A0B O;  2AXT O;  4UB6 O;  5G38 A;  5G39 A;  4UB8 O;  3A0H O;  5GTI O;  5GTH O;  4IL6 O;  3JCU O;  3KZI O;  5G3A A;  1S5L O;  4PJ0 O;  5KAF O;  5KAI O; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...