1BXWA

Outer membrane protein a (ompa) transmembrane domain
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
172
structure length
172
Chain Sequence
MAPKDNTWYTGAKLGWSQYHDTGLINNNGPTHENKLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTAKLGYPITDDLDIYTRLGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the outer membrane protein A transmembrane domain.
pubmed doi rcsb
molecule tags Membrane protein
source organism Escherichia coli bl21(de3)
molecule keywords PROTEIN (OUTER MEMBRANE PROTEIN A)
total genus 35
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 1998-10-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 1bxwA00
1QJ9A 1QJ8A 2M07A 2N2LA 1MM5A 1BXWA 1Q9FA 4PUXA 3QRAA 1MM4A 1QJPA 3C5OA 2F1VA 2N2MA 2F1TA 1Q9GA 1THQA 2GE4A 3G7GA 2MHLA 3GP6A 2K0LA 1ORMA 3QRCA 4RLCA 2ERVA 1P4TA 2LHFA 2X27X 1G90A 2MNHA 2M06A 2JMMA
chains in the Genus database with same CATH superfamily
2M07A 1BT9A 3HOEA 2WJRA 4FSPA 4RJWA 3T24A 3V8UA 4C4VB 2ODJA 5H2FO 1MM5A 3AA0B 3KVDD 4O3ZA 4AKMA 2J1NA 2R4PA 3LK3B 4GCPA 3EMNX 5GTHO 1MM4A 2KDYA 4PJ0O 5B66O 2YPVA 4AFKA 1E54A 4GF4A 4FQEA 4AKRA 2XTRA 2XE5A 3O0EA 1IZNB 4E1SA 2N2MA 3DWNA 3POUA 2Y0KA 4FSOA 2F1TA 4FUVA 5FVNA 5G26A 3SY9A 3NSGA 4K3CA 1PRNA 5GTIO 2MHLA 3DZMA 4K3BA 4O3YA 1HXXA 3LK42 1ORMA 2AXTO 5AFUL 4GCSA 3AA7B 5EE2A 1BH3A 4AYMC 4RJXA 4D64A 3T20A 2X27X 1ZHXA 2XG6A 2MNHA 3HW9A 2KZ7A 3HOLA 1QJ9A 3SZVA 3SZDA 4C00A 2JQYA 2ZLDA 3BRYA 3PQUA 4FMSA 5GV0A 3DWOX 2OMFA 3SYBA 1PHOA 7PRNA 3AA6B 4IL6O 2LFUA 2KXPA 5E79O 2X9KA 2R4LA 3SYSA 2KZ7B 2YNKA 3UU2A 1GFPA 2IWVA 2XE1A 2XE3A 4FRTA 4KRAA 5DL6A 3WU2O 4LSEA 2FGQX 3AAEA 1HXTA 4FZLA 3FYXA 2KXPB 2R8AA 1Q9GA 1THQA 5KAFO 1T16A 3AAEB 3DA3A 4PR7A 4RLBA 3K19A 3WI4A 4E1TA 5B5EO 1ZHWA 3PGRA 3HWBA 4BUMX 4UB6O 2K0LA 3TZGA 4AKRB 5JDPA 4G75A 4RLCA 3JTYA 2PORA 5IYUA 4FRXA 3AAAA 2FGRA 2Y0HA 2GE4A 1P4TA 3PGSA 4O3WA 5T5FA 2Y7SA 4FOZA 2XTQA 3BS0A 4LSFA 3VZTX 3PGUA 2XE2A 2ZFGA 5TISO 2J4UP 2XMXA 3RBHA 4CTDA 3A2SX 1ZHYA 2R4NA 3DA4A 3PQSA 2W81C 4LSHA 3KZIO 5KAIO 3PRNA 4N59A 4AZLA 4Z3TA 3T0SA 4UB8O 2F1CX 2WJQA 4FT6A 4AYDC 1ZHTA 2R4OA 2Y2XA 3A0HO 4O3XB 1GFOA 2WVPA 4C4VA 1OSMA 3LK2A 3VY9X 4O4XA 4XNLA 6PRNA 3VE2A 4LSIA 4GHBA 2PRNA 4C69X 3GP6A 5D5DA 3QRCA 4KR8A 4KR4A 3A0BO 4QQ1A 2W80C 5DL8A 3LK2B 1GFNA 3LK3A 3JCUO 4O4UA 4PUXA 2JMMA 3VZUX 4GCQA 1QJ8A 4FZMA 3WI5A 3POQA 2N2LA 1OPFA 4N58A 3POXA 2R88A 4O49A 3UAQA 2R89A 1IZNA 1GFMA 4F4BA 1BXWA 1Q9FA 3NJTA 5PRNA 3AAAB 3QRAA 4RL9A 1S5LO 4U9CA 1QJPA 3C5OA 2K4TA 4AYID 4B61A 3VZWX 2F1VA 2Y0LA 4D5UA 4JCHA 1ZHZA 5G39A 4N74A 1HXUA 3AA7A 3SY7A 5DL7A 3PF1A 1T1LA 5AFUK 4AUIA 3UPGA 4FZNA 4G76A 1GFQA 3VE1A 5ADXK 3AA1A 2IWWA 4JFBA 3G7GA 4XNKA 4AYNA 4AYEC 5ADXL 5DL5A 4FESA 5G38A 2QTKA 1H6S1 2ERVA 2O4VA 3AA6A 3VY8X 2LHFA 4D65A 8PRNA 2KC0A 1MPFA 3AA0A 3LK41 4N75A 3AA1B 5G3AA 1G90A 1YS5A 2M06A 3PORA 3BRZA
chains in the Genus database with same CATH topology
2M07A 1BT9A 3HOEA 4FSPA 4RJWA 3T24A 3V8UA 2ODJA 1MM5A 3AA0B 3KVDD 4O3ZA 4AKMA 2J1NA 3LK3B 4GCPA 3EMNX 1MM4A 2KDYA 2YPVA 4AFKA 1E54A 4GF4A 4AKRA 2XTRA 2XE5A 3O0EA 1IZNB 4E1SA 2N2MA 3POUA 4FSOA 2Y0KA 4FUVA 2F1TA 5FVNA 5G26A 3SY9A 3NSGA 1PRNA 2MHLA 4O3YA 1HXXA 3LK42 1ORMA 5AFUL 4GCSA 3AA7B 5EE2A 1BH3A 4AYMC 4RJXA 4D64A 3T20A 2X27X 1ZHXA 2XG6A 2MNHA 3HW9A 2KZ7A 3HOLA 1QJ9A 3SZVA 3SZDA 2ZLDA 3PQUA 4FMSA 5GV0A 2OMFA 3SYBA 1PHOA 7PRNA 3AA6B 2LFUA 2KXPA 3SYSA 3UU2A 2KZ7B 2YNKA 1GFPA 4AYDC 2XE1A 2XE3A 4FRTA 4KRAA 5DL6A 4LSEA 2FGQX 3AAEA 1HXTA 4FZLA 3FYXA 2KXPB 1Q9GA 1THQA 3AAEB 3DA3A 4RLBA 4E1TA 3K19A 3WI4A 1ZHWA 4BUMX 3HWBA 5JDPA 2K0LA 3TZGA 4AKRB 4G75A 4RLCA 3JTYA 2PORA 5IYUA 4FRXA 3AAAA 2FGRA 2Y0HA 2GE4A 1P4TA 4O3WA 5T5FA 2Y7SA 4FOZA 2XTQA 4LSFA 3VZTX 2XE2A 2ZFGA 2J4UP 2XMXA 3RBHA 3A2SX 1ZHYA 3DA4A 3PQSA 2W81C 4LSHA 4Z3TA 3PRNA 4N59A 4AZLA 3T0SA 4FT6A 1ZHTA 2Y2XA 4O3XB 1GFOA 1OSMA 3LK2A 3VY9X 4O4XA 4XNLA 6PRNA 3VE2A 4LSIA 4GHBA 2PRNA 4C69X 3GP6A 5D5DA 3QRCA 4KR8A 4KR4A 4QQ1A 5DL8A 2W80C 3LK2B 1GFNA 3LK3A 4O4UA 4PUXA 2JMMA 3VZUX 4GCQA 1QJ8A 4FZMA 3WI5A 3POQA 2N2LA 1OPFA 4N58A 3POXA 4O49A 3UAQA 1IZNA 1GFMA 4F4BA 1BXWA 1Q9FA 5PRNA 3AAAB 3QRAA 4RL9A 4U9CA 1QJPA 3C5OA 2K4TA 4AYID 4B61A 3VZWX 2F1VA 2Y0LA 4D5UA 4JCHA 1ZHZA 3SY7A 1HXUA 3AA7A 5DL7A 5AFUK 4AUIA 3UPGA 4FZNA 4G76A 1GFQA 3VE1A 5ADXK 3AA1A 4JFBA 3G7GA 4XNKA 4AYNA 4AYEC 5ADXL 5DL5A 4FESA 2QTKA 1H6S1 2ERVA 2O4VA 3AA6A 3VY8X 2LHFA 4D65A 8PRNA 2KC0A 1MPFA 3AA0A 3LK41 3AA1B 1G90A 1YS5A 2M06A 3PORA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QJ9 A;  1QJ8 A;  2M07 A;  2N2L A;  1MM5 A;  1BXW A;  1Q9F A;  4PUX A;  3QRA A;  1MM4 A;  1QJP A;  3C5O A;  2F1V A;  2N2M A;  2F1T A;  1Q9G A;  1THQ A;  2GE4 A;  3G7G A;  2MHL A;  3GP6 A;  2K0L A;  1ORM A;  3QRC A;  4RLC A;  2ERV A;  1P4T A;  2LHF A;  2X27 X;  1G90 A;  2MNH A;  2M06 A;  2JMM A; 
#chains in the Genus database with same CATH topology
 2M07 A;  1BT9 A;  3HOE A;  2WJR A;  4FSP A;  4RJW A;  3T24 A;  3V8U A;  4C4V B;  2ODJ A;  5H2F O;  1MM5 A;  3AA0 B;  3KVD D;  4O3Z A;  4AKM A;  2J1N A;  2R4P A;  3LK3 B;  4GCP A;  3EMN X;  5GTH O;  1MM4 A;  2KDY A;  4PJ0 O;  5B66 O;  2YPV A;  4AFK A;  1E54 A;  4GF4 A;  4FQE A;  4AKR A;  2XTR A;  2XE5 A;  3O0E A;  1IZN B;  4E1S A;  2N2M A;  3DWN A;  3POU A;  2Y0K A;  4FSO A;  2F1T A;  4FUV A;  5FVN A;  5G26 A;  3SY9 A;  3NSG A;  4K3C A;  1PRN A;  5GTI O;  2MHL A;  3DZM A;  4K3B A;  4O3Y A;  1HXX A;  3LK4 2;  1ORM A;  2AXT O;  5AFU L;  4GCS A;  3AA7 B;  5EE2 A;  1BH3 A;  4AYM C;  4RJX A;  4D64 A;  3T20 A;  2X27 X;  1ZHX A;  2XG6 A;  2MNH A;  3HW9 A;  2KZ7 A;  3HOL A;  1QJ9 A;  3SZV A;  3SZD A;  4C00 A;  2JQY A;  2ZLD A;  3BRY A;  3PQU A;  4FMS A;  5GV0 A;  3DWO X;  2OMF A;  3SYB A;  1PHO A;  7PRN A;  3AA6 B;  4IL6 O;  2LFU A;  2KXP A;  5E79 O;  2X9K A;  2R4L A;  3SYS A;  2KZ7 B;  2YNK A;  3UU2 A;  1GFP A;  2IWV A;  2XE1 A;  2XE3 A;  4FRT A;  4KRA A;  5DL6 A;  3WU2 O;  4LSE A;  2FGQ X;  3AAE A;  1HXT A;  4FZL A;  3FYX A;  2KXP B;  2R8A A;  1Q9G A;  1THQ A;  5KAF O;  1T16 A;  3AAE B;  3DA3 A;  4PR7 A;  4RLB A;  3K19 A;  3WI4 A;  4E1T A;  5B5E O;  1ZHW A;  3PGR A;  3HWB A;  4BUM X;  4UB6 O;  2K0L A;  3TZG A;  4AKR B;  5JDP A;  4G75 A;  4RLC A;  3JTY A;  2POR A;  5IYU A;  4FRX A;  3AAA A;  2FGR A;  2Y0H A;  2GE4 A;  1P4T A;  3PGS A;  4O3W A;  5T5F A;  2Y7S A;  4FOZ A;  2XTQ A;  3BS0 A;  4LSF A;  3VZT X;  3PGU A;  2XE2 A;  2ZFG A;  5TIS O;  2J4U P;  2XMX A;  3RBH A;  4CTD A;  3A2S X;  1ZHY A;  2R4N A;  3DA4 A;  3PQS A;  2W81 C;  4LSH A;  3KZI O;  5KAI O;  3PRN A;  4N59 A;  4AZL A;  4Z3T A;  3T0S A;  4UB8 O;  2F1C X;  2WJQ A;  4FT6 A;  4AYD C;  1ZHT A;  2R4O A;  2Y2X A;  3A0H O;  4O3X B;  1GFO A;  2WVP A;  4C4V A;  1OSM A;  3LK2 A;  3VY9 X;  4O4X A;  4XNL A;  6PRN A;  3VE2 A;  4LSI A;  4GHB A;  2PRN A;  4C69 X;  3GP6 A;  5D5D A;  3QRC A;  4KR8 A;  4KR4 A;  3A0B O;  4QQ1 A;  2W80 C;  5DL8 A;  3LK2 B;  1GFN A;  3LK3 A;  3JCU O;  4O4U A;  4PUX A;  2JMM A;  3VZU X;  4GCQ A;  1QJ8 A;  4FZM A;  3WI5 A;  3POQ A;  2N2L A;  1OPF A;  4N58 A;  3POX A;  2R88 A;  4O49 A;  3UAQ A;  2R89 A;  1IZN A;  1GFM A;  4F4B A;  1BXW A;  1Q9F A;  3NJT A;  5PRN A;  3AAA B;  3QRA A;  4RL9 A;  1S5L O;  4U9C A;  1QJP A;  3C5O A;  2K4T A;  4AYI D;  4B61 A;  3VZW X;  2F1V A;  2Y0L A;  4D5U A;  4JCH A;  1ZHZ A;  5G39 A;  4N74 A;  1HXU A;  3AA7 A;  3SY7 A;  5DL7 A;  3PF1 A;  1T1L A;  5AFU K;  4AUI A;  3UPG A;  4FZN A;  4G76 A;  1GFQ A;  3VE1 A;  5ADX K;  3AA1 A;  2IWW A;  4JFB A;  3G7G A;  4XNK A;  4AYN A;  4AYE C;  5ADX L;  5DL5 A;  4FES A;  5G38 A;  2QTK A;  1H6S 1;  2ERV A;  2O4V A;  3AA6 A;  3VY8 X;  2LHF A;  4D65 A;  8PRN A;  2KC0 A;  1MPF A;  3AA0 A;  3LK4 1;  4N75 A;  3AA1 B;  5G3A A;  1G90 A;  1YS5 A;  2M06 A;  3POR A;  3BRZ A; 
#chains in the Genus database with same CATH homology
 2M07 A;  1BT9 A;  3HOE A;  4FSP A;  4RJW A;  3T24 A;  3V8U A;  2ODJ A;  1MM5 A;  3AA0 B;  3KVD D;  4O3Z A;  4AKM A;  2J1N A;  3LK3 B;  4GCP A;  3EMN X;  1MM4 A;  2KDY A;  2YPV A;  4AFK A;  1E54 A;  4GF4 A;  4AKR A;  2XTR A;  2XE5 A;  3O0E A;  1IZN B;  4E1S A;  2N2M A;  3POU A;  4FSO A;  2Y0K A;  4FUV A;  2F1T A;  5FVN A;  5G26 A;  3SY9 A;  3NSG A;  1PRN A;  2MHL A;  4O3Y A;  1HXX A;  3LK4 2;  1ORM A;  5AFU L;  4GCS A;  3AA7 B;  5EE2 A;  1BH3 A;  4AYM C;  4RJX A;  4D64 A;  3T20 A;  2X27 X;  1ZHX A;  2XG6 A;  2MNH A;  3HW9 A;  2KZ7 A;  3HOL A;  1QJ9 A;  3SZV A;  3SZD A;  2ZLD A;  3PQU A;  4FMS A;  5GV0 A;  2OMF A;  3SYB A;  1PHO A;  7PRN A;  3AA6 B;  2LFU A;  2KXP A;  3SYS A;  3UU2 A;  2KZ7 B;  2YNK A;  1GFP A;  4AYD C;  2XE1 A;  2XE3 A;  4FRT A;  4KRA A;  5DL6 A;  4LSE A;  2FGQ X;  3AAE A;  1HXT A;  4FZL A;  3FYX A;  2KXP B;  1Q9G A;  1THQ A;  3AAE B;  3DA3 A;  4RLB A;  4E1T A;  3K19 A;  3WI4 A;  1ZHW A;  4BUM X;  3HWB A;  5JDP A;  2K0L A;  3TZG A;  4AKR B;  4G75 A;  4RLC A;  3JTY A;  2POR A;  5IYU A;  4FRX A;  3AAA A;  2FGR A;  2Y0H A;  2GE4 A;  1P4T A;  4O3W A;  5T5F A;  2Y7S A;  4FOZ A;  2XTQ A;  4LSF A;  3VZT X;  2XE2 A;  2ZFG A;  2J4U P;  2XMX A;  3RBH A;  3A2S X;  1ZHY A;  3DA4 A;  3PQS A;  2W81 C;  4LSH A;  4Z3T A;  3PRN A;  4N59 A;  4AZL A;  3T0S A;  4FT6 A;  1ZHT A;  2Y2X A;  4O3X B;  1GFO A;  1OSM A;  3LK2 A;  3VY9 X;  4O4X A;  4XNL A;  6PRN A;  3VE2 A;  4LSI A;  4GHB A;  2PRN A;  4C69 X;  3GP6 A;  5D5D A;  3QRC A;  4KR8 A;  4KR4 A;  4QQ1 A;  5DL8 A;  2W80 C;  3LK2 B;  1GFN A;  3LK3 A;  4O4U A;  4PUX A;  2JMM A;  3VZU X;  4GCQ A;  1QJ8 A;  4FZM A;  3WI5 A;  3POQ A;  2N2L A;  1OPF A;  4N58 A;  3POX A;  4O49 A;  3UAQ A;  1IZN A;  1GFM A;  4F4B A;  1BXW A;  1Q9F A;  5PRN A;  3AAA B;  3QRA A;  4RL9 A;  4U9C A;  1QJP A;  3C5O A;  2K4T A;  4AYI D;  4B61 A;  3VZW X;  2F1V A;  2Y0L A;  4D5U A;  4JCH A;  1ZHZ A;  3SY7 A;  1HXU A;  3AA7 A;  5DL7 A;  5AFU K;  4AUI A;  3UPG A;  4FZN A;  4G76 A;  1GFQ A;  3VE1 A;  5ADX K;  3AA1 A;  4JFB A;  3G7G A;  4XNK A;  4AYN A;  4AYE C;  5ADX L;  5DL5 A;  4FES A;  2QTK A;  1H6S 1;  2ERV A;  2O4V A;  3AA6 A;  3VY8 X;  2LHF A;  4D65 A;  8PRN A;  2KC0 A;  1MPF A;  3AA0 A;  3LK4 1;  3AA1 B;  1G90 A;  1YS5 A;  2M06 A;  3POR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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