1GFN | Genus

Total Genus 92

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	92
sequence length	334
structure length	327
Chain Sequence	AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALPYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 327 atoms

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327 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transmembrane protein
source organism	Escherichia coli
publication title	Structural and functional characterization of OmpF porin mutants selected for larger pore size. I. Crystallographic analysis. pubmed doi rcsb
molecule keywords	MATRIX PORIN OUTER MEMBRANE PROTEIN F
total genus	92
structure length	327
sequence length	334
ec nomenclature
pdb deposition date	1996-05-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00267	Porin_1	Gram-negative porin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	1gfnA00

2FGQX 1BH3A 8PRNA 2XE3A 4KR4A 3A2SX 3VY8X 2ZFGA 4JFBA 3T24A 2Y2XA 3K19A 4LSFA 1BT9A 1H6S1 1OSMA 1GFQA 4GCPA 4D5UA 4FRXA 3VY9X 4D65A 5DL7A 1HXXA 4LSIA 4FSOA 3O0EA 3SYSA 2O4VA 1PRNA 4FOZA 3UU2A 5DL5A 4D64A 2Y0LA 4GCSA 5DL8A 4KR8A 2K4TA 3SYBA 3T20A 4GCQA 1E54A 2Y0KA 3POXA 3SZDA 2XE1A 4AUIA 3WI5A 2PRNA 4LSEA 2PORA 4KRAA 4RJWA 5FVNA 4FT6A 1HXTA 7PRNA 2FGRA 3HW9A 4LSHA 3PRNA 3FYXA 1GFNA 1GFOA 1GFPA 2J1NA 3HWBA 4BUMX 4FRTA 1HXUA 3T0SA 3JTYA 3UPGA 3VZUX 6PRNA 2OMFA 4RJXA 4FSPA 3POQA 3SZVA 2Y0HA 2ZLDA 3WI4A 5PRNA 5JDPA 3NSGA 1MPFA 3SY9A 3VZTX 4FMSA 3EMNX 2XG6A 1GFMA 4C69X 2J4UP 2XE2A 1OPFA 2QTKA 2XE5A 3SY7A 5DL6A 1PHOA 3PORA 3POUA 2ODJA 3VZWX
chains in the Genus database with same CATH superfamily

2FGQX 4AYDC 4UB8O 1BH3A 5B66O 8PRNA 1T16A 3PF1A 2XE3A 3QRAA 5TISO 5KAFO 3G7GA 5D5DA 4K3CA 5GTHO 4KR4A 3A2SX 3PGSA 3VY8X 2ZFGA 4JFBA 3T24A 1ORMA 4IL6O 2Y2XA 3K19A 4LSFA 3V8UA 1BT9A 1Q9FA 2ERVA 2R88A 2W81C 5EE2A 5ADXL 4K3BA 1P4TA 2F1CX 3HOLA 4PJ0O 3LK42 3QRCA 1H6S1 1OSMA 1GFQA 2KZ7A 1QJPA 2R8AA 2XTRA 4AFKA 2M07A 1T1LA 3AA1B 4GCPA 4D5UA 2R4LA 3VE1A 3AA6B 3LK3A 2JQYA 4FRXA 3TZGA 4N74A 4O3ZA 5JDPA 1QJ8A 3DWNA 3VY9X 4RLCA 4CTDA 3PQSA 2XTQA 4N58A 3A0BO 3PQUA 5DL7A 4D65A 1HXXA 2KXPB 4LSIA 3AAEB 2AXTO 3HOEA 5G3AA 5GTIO 1G90A 4FSOA 3BRZA 1IZNB 2R4NA 4FZMA 4AZLA 3WU2O 4O3YA 3A0HO 3O0EA 3SYSA 1BXWA 3AA1A 5E79O 4F4BA 2O4VA 4O4UA 4E1SA 1PRNA 2KC0A 2WJRA 3BS0A 2JMMA 2Y7SA 3PGRA 4FOZA 4O3WA 5KAIO 4C4VB 4E1TA 3UU2A 5DL5A 4PR7A 4AKRA 4D64A 2Y0LA 3LK2B 4GCSA 4AYID 4PUXA 2MHLA 5IYUA 1ZHYA 2XMXA 3AAAB 4RL9A 4KR8A 3AA0B 4GF4A 5DL8A 3RBHA 2YPVA 2K4TA 2X27X 3AA7B 3C5OA 2KXPA 4U9CA 3SYBA 3AAEA 4GCQA 1E54A 3T20A 2Y0KA 3DZMA 4XNKA 1IZNA 4FZLA 3VE2A 5B5EO 2N2MA 1ZHZA 4G76A 5ADXK 4FUVA 3POXA 2F1TA 5T5FA 4B61A 3SZDA 3KZIO 2M06A 2WJQA 2MNHA 2XE1A 2YNKA 4O3XB 3WI5A 4AUIA 4AYMC 5GV0A 2R4OA 1MM4A 1S5LO 2PRNA 1ZHXA 4AYEC 3AA0A 4XNLA 3JCUO 2N2LA 3BRYA 4JCHA 4LSEA 2PORA 4AYNA 1Q9GA 2LHFA 5G38A 2KDYA 3AA6A 4UB6O 4KRAA 5G26A 4RJWA 4C00A 5FVNA 2W80C 2F1VA 1HXTA 4FT6A 3WI4A 7PRNA 1YS5A 4G75A 2FGRA 4Z3TA 4FZNA 4QQ1A 3HW9A 2IWVA 4AKMA 2KZ7B 4LSHA 3PRNA 1MM5A 3FYXA 4O4XA 5G39A 1GFNA 1GFOA 1GFPA 2J1NA 2WVPA 3HWBA 3GP6A 1ZHWA 3DA4A 4N59A 4BUMX 5AFUL 4FRTA 3DA3A 4O49A 1HXUA 2X9KA 3DWOX 4RLBA 3JTYA 3LK3B 3T0SA 3UPGA 2R4PA 3VZUX 6PRNA 2OMFA 4GHBA 4FSPA 4RJXA 3POQA 3SZVA 4C4VA 2Y0HA 1ZHTA 1THQA 2GE4A 2ZLDA 5PRNA 2R89A 3LK2A 1MPFA 3NSGA 3PGUA 3SY9A 3VZTX 4FMSA 3NJTA 3AAAA 3EMNX 3LK41 2IWWA 2XG6A 1GFMA 1QJ9A 4FESA 3KVDD 3UAQA 5H2FO 3AA7A 4N75A 4C69X 5AFUK 2K0LA 2J4UP 2XE2A 1OPFA 2QTKA 2XE5A 4FQEA 3SY7A 5DL6A 1PHOA 3PORA 3POUA 2ODJA 2LFUA 3VZWX 4AKRB
chains in the Genus database with same CATH topology

2FGQX 4AYDC 1BH3A 8PRNA 2XE3A 3QRAA 3G7GA 5D5DA 4KR4A 3A2SX 3VY8X 2ZFGA 4JFBA 3T24A 1ORMA 2Y2XA 3K19A 4LSFA 3V8UA 1BT9A 1Q9FA 2ERVA 5EE2A 2W81C 5ADXL 1P4TA 3HOLA 3LK42 3QRCA 1H6S1 1OSMA 1GFQA 2KZ7A 1QJPA 2XTRA 4AFKA 2M07A 4GCPA 3AA1B 4D5UA 3VE1A 3AA6B 3LK3A 4FRXA 3TZGA 4O3ZA 1QJ8A 3VY9X 4RLCA 3PQSA 2XTQA 4N58A 3PQUA 4D65A 5DL7A 1HXXA 2KXPB 4LSIA 3AAEB 3HOEA 1G90A 4FSOA 1IZNB 4FZMA 4AZLA 4O3YA 3O0EA 3SYSA 1BXWA 3AA1A 4F4BA 2O4VA 4O4UA 4E1SA 1PRNA 2KC0A 2JMMA 2Y7SA 4FOZA 4E1TA 4O3WA 3UU2A 5DL5A 4AKRA 4D64A 2Y0LA 3LK2B 4GCSA 4AYID 4PUXA 2MHLA 5IYUA 1ZHYA 2XMXA 3AAAB 4RL9A 4KR8A 3AA0B 4GF4A 5DL8A 3RBHA 2YPVA 2K4TA 2X27X 3AA7B 3C5OA 2KXPA 4U9CA 3SYBA 3AAEA 4GCQA 1E54A 3T20A 2Y0KA 4XNKA 3VE2A 1IZNA 4FZLA 2N2MA 1ZHZA 4G76A 5ADXK 4FUVA 3POXA 2F1TA 5T5FA 4B61A 3SZDA 2M06A 2XE1A 2MNHA 2YNKA 4O3XB 3WI5A 4AUIA 4AYMC 5GV0A 1MM4A 2PRNA 1ZHXA 4AYEC 3AA0A 4XNLA 2N2LA 4JCHA 4LSEA 2PORA 4AYNA 1Q9GA 2LHFA 2KDYA 3AA6A 4KRAA 5G26A 4RJWA 5FVNA 2W80C 2F1VA 1HXTA 4FT6A 7PRNA 1YS5A 4G75A 2FGRA 4Z3TA 4FZNA 4QQ1A 3HW9A 4AKMA 2KZ7B 4LSHA 3PRNA 1MM5A 3FYXA 4O4XA 1GFNA 1GFOA 1GFPA 2J1NA 3HWBA 4N59A 3GP6A 1ZHWA 3DA4A 4BUMX 5AFUL 4FRTA 3DA3A 4O49A 1HXUA 3T0SA 4RLBA 3JTYA 3LK3B 3UPGA 3VZUX 6PRNA 2OMFA 4GHBA 4FSPA 4RJXA 3POQA 3SZVA 2Y0HA 1ZHTA 1THQA 2GE4A 2ZLDA 5PRNA 3LK2A 3NSGA 1MPFA 3WI4A 5JDPA 3SY9A 3VZTX 4FMSA 3AAAA 3EMNX 3LK41 2XG6A 1GFMA 1QJ9A 4FESA 3KVDD 3UAQA 3AA7A 4C69X 5AFUK 2K0LA 2J4UP 2XE2A 1OPFA 2QTKA 2XE5A 3SY7A 5DL6A 1PHOA 3PORA 3POUA 2ODJA 2LFUA 3VZWX 4AKRB
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2FGQ X;  1BH3 A;  8PRN A;  2XE3 A;  4KR4 A;  3A2S X;  3VY8 X;  2ZFG A;  4JFB A;  3T24 A;  2Y2X A;  3K19 A;  4LSF A;  1BT9 A;  1H6S 1;  1OSM A;  1GFQ A;  4GCP A;  4D5U A;  4FRX A;  3VY9 X;  4D65 A;  5DL7 A;  1HXX A;  4LSI A;  4FSO A;  3O0E A;  3SYS A;  2O4V A;  1PRN A;  4FOZ A;  3UU2 A;  5DL5 A;  4D64 A;  2Y0L A;  4GCS A;  5DL8 A;  4KR8 A;  2K4T A;  3SYB A;  3T20 A;  4GCQ A;  1E54 A;  2Y0K A;  3POX A;  3SZD A;  2XE1 A;  4AUI A;  3WI5 A;  2PRN A;  4LSE A;  2POR A;  4KRA A;  4RJW A;  5FVN A;  4FT6 A;  1HXT A;  7PRN A;  2FGR A;  3HW9 A;  4LSH A;  3PRN A;  3FYX A;  1GFN A;  1GFO A;  1GFP A;  2J1N A;  3HWB A;  4BUM X;  4FRT A;  1HXU A;  3T0S A;  3JTY A;  3UPG A;  3VZU X;  6PRN A;  2OMF A;  4RJX A;  4FSP A;  3POQ A;  3SZV A;  2Y0H A;  2ZLD A;  3WI4 A;  5PRN A;  5JDP A;  3NSG A;  1MPF A;  3SY9 A;  3VZT X;  4FMS A;  3EMN X;  2XG6 A;  1GFM A;  4C69 X;  2J4U P;  2XE2 A;  1OPF A;  2QTK A;  2XE5 A;  3SY7 A;  5DL6 A;  1PHO A;  3POR A;  3POU A;  2ODJ A;  3VZW X; 
#chains in the Genus database with same CATH topology
 2FGQ X;  4AYD C;  4UB8 O;  1BH3 A;  5B66 O;  8PRN A;  1T16 A;  3PF1 A;  2XE3 A;  3QRA A;  5TIS O;  5KAF O;  3G7G A;  5D5D A;  4K3C A;  5GTH O;  4KR4 A;  3A2S X;  3PGS A;  3VY8 X;  2ZFG A;  4JFB A;  3T24 A;  1ORM A;  4IL6 O;  2Y2X A;  3K19 A;  4LSF A;  3V8U A;  1BT9 A;  1Q9F A;  2ERV A;  2R88 A;  2W81 C;  5EE2 A;  5ADX L;  4K3B A;  1P4T A;  2F1C X;  3HOL A;  4PJ0 O;  3LK4 2;  3QRC A;  1H6S 1;  1OSM A;  1GFQ A;  2KZ7 A;  1QJP A;  2R8A A;  2XTR A;  4AFK A;  2M07 A;  1T1L A;  3AA1 B;  4GCP A;  4D5U A;  2R4L A;  3VE1 A;  3AA6 B;  3LK3 A;  2JQY A;  4FRX A;  3TZG A;  4N74 A;  4O3Z A;  5JDP A;  1QJ8 A;  3DWN A;  3VY9 X;  4RLC A;  4CTD A;  3PQS A;  2XTQ A;  4N58 A;  3A0B O;  3PQU A;  5DL7 A;  4D65 A;  1HXX A;  2KXP B;  4LSI A;  3AAE B;  2AXT O;  3HOE A;  5G3A A;  5GTI O;  1G90 A;  4FSO A;  3BRZ A;  1IZN B;  2R4N A;  4FZM A;  4AZL A;  3WU2 O;  4O3Y A;  3A0H O;  3O0E A;  3SYS A;  1BXW A;  3AA1 A;  5E79 O;  4F4B A;  2O4V A;  4O4U A;  4E1S A;  1PRN A;  2KC0 A;  2WJR A;  3BS0 A;  2JMM A;  2Y7S A;  3PGR A;  4FOZ A;  4O3W A;  5KAI O;  4C4V B;  4E1T A;  3UU2 A;  5DL5 A;  4PR7 A;  4AKR A;  4D64 A;  2Y0L A;  3LK2 B;  4GCS A;  4AYI D;  4PUX A;  2MHL A;  5IYU A;  1ZHY A;  2XMX A;  3AAA B;  4RL9 A;  4KR8 A;  3AA0 B;  4GF4 A;  5DL8 A;  3RBH A;  2YPV A;  2K4T A;  2X27 X;  3AA7 B;  3C5O A;  2KXP A;  4U9C A;  3SYB A;  3AAE A;  4GCQ A;  1E54 A;  3T20 A;  2Y0K A;  3DZM A;  4XNK A;  1IZN A;  4FZL A;  3VE2 A;  5B5E O;  2N2M A;  1ZHZ A;  4G76 A;  5ADX K;  4FUV A;  3POX A;  2F1T A;  5T5F A;  4B61 A;  3SZD A;  3KZI O;  2M06 A;  2WJQ A;  2MNH A;  2XE1 A;  2YNK A;  4O3X B;  3WI5 A;  4AUI A;  4AYM C;  5GV0 A;  2R4O A;  1MM4 A;  1S5L O;  2PRN A;  1ZHX A;  4AYE C;  3AA0 A;  4XNL A;  3JCU O;  2N2L A;  3BRY A;  4JCH A;  4LSE A;  2POR A;  4AYN A;  1Q9G A;  2LHF A;  5G38 A;  2KDY A;  3AA6 A;  4UB6 O;  4KRA A;  5G26 A;  4RJW A;  4C00 A;  5FVN A;  2W80 C;  2F1V A;  1HXT A;  4FT6 A;  3WI4 A;  7PRN A;  1YS5 A;  4G75 A;  2FGR A;  4Z3T A;  4FZN A;  4QQ1 A;  3HW9 A;  2IWV A;  4AKM A;  2KZ7 B;  4LSH A;  3PRN A;  1MM5 A;  3FYX A;  4O4X A;  5G39 A;  1GFN A;  1GFO A;  1GFP A;  2J1N A;  2WVP A;  3HWB A;  3GP6 A;  1ZHW A;  3DA4 A;  4N59 A;  4BUM X;  5AFU L;  4FRT A;  3DA3 A;  4O49 A;  1HXU A;  2X9K A;  3DWO X;  4RLB A;  3JTY A;  3LK3 B;  3T0S A;  3UPG A;  2R4P A;  3VZU X;  6PRN A;  2OMF A;  4GHB A;  4FSP A;  4RJX A;  3POQ A;  3SZV A;  4C4V A;  2Y0H A;  1ZHT A;  1THQ A;  2GE4 A;  2ZLD A;  5PRN A;  2R89 A;  3LK2 A;  1MPF A;  3NSG A;  3PGU A;  3SY9 A;  3VZT X;  4FMS A;  3NJT A;  3AAA A;  3EMN X;  3LK4 1;  2IWW A;  2XG6 A;  1GFM A;  1QJ9 A;  4FES A;  3KVD D;  3UAQ A;  5H2F O;  3AA7 A;  4N75 A;  4C69 X;  5AFU K;  2K0L A;  2J4U P;  2XE2 A;  1OPF A;  2QTK A;  2XE5 A;  4FQE A;  3SY7 A;  5DL6 A;  1PHO A;  3POR A;  3POU A;  2ODJ A;  2LFU A;  3VZW X;  4AKR B; 
#chains in the Genus database with same CATH homology
 2FGQ X;  4AYD C;  1BH3 A;  8PRN A;  2XE3 A;  3QRA A;  3G7G A;  5D5D A;  4KR4 A;  3A2S X;  3VY8 X;  2ZFG A;  4JFB A;  3T24 A;  1ORM A;  2Y2X A;  3K19 A;  4LSF A;  3V8U A;  1BT9 A;  1Q9F A;  2ERV A;  5EE2 A;  2W81 C;  5ADX L;  1P4T A;  3HOL A;  3LK4 2;  3QRC A;  1H6S 1;  1OSM A;  1GFQ A;  2KZ7 A;  1QJP A;  2XTR A;  4AFK A;  2M07 A;  4GCP A;  3AA1 B;  4D5U A;  3VE1 A;  3AA6 B;  3LK3 A;  4FRX A;  3TZG A;  4O3Z A;  1QJ8 A;  3VY9 X;  4RLC A;  3PQS A;  2XTQ A;  4N58 A;  3PQU A;  4D65 A;  5DL7 A;  1HXX A;  2KXP B;  4LSI A;  3AAE B;  3HOE A;  1G90 A;  4FSO A;  1IZN B;  4FZM A;  4AZL A;  4O3Y A;  3O0E A;  3SYS A;  1BXW A;  3AA1 A;  4F4B A;  2O4V A;  4O4U A;  4E1S A;  1PRN A;  2KC0 A;  2JMM A;  2Y7S A;  4FOZ A;  4E1T A;  4O3W A;  3UU2 A;  5DL5 A;  4AKR A;  4D64 A;  2Y0L A;  3LK2 B;  4GCS A;  4AYI D;  4PUX A;  2MHL A;  5IYU A;  1ZHY A;  2XMX A;  3AAA B;  4RL9 A;  4KR8 A;  3AA0 B;  4GF4 A;  5DL8 A;  3RBH A;  2YPV A;  2K4T A;  2X27 X;  3AA7 B;  3C5O A;  2KXP A;  4U9C A;  3SYB A;  3AAE A;  4GCQ A;  1E54 A;  3T20 A;  2Y0K A;  4XNK A;  3VE2 A;  1IZN A;  4FZL A;  2N2M A;  1ZHZ A;  4G76 A;  5ADX K;  4FUV A;  3POX A;  2F1T A;  5T5F A;  4B61 A;  3SZD A;  2M06 A;  2XE1 A;  2MNH A;  2YNK A;  4O3X B;  3WI5 A;  4AUI A;  4AYM C;  5GV0 A;  1MM4 A;  2PRN A;  1ZHX A;  4AYE C;  3AA0 A;  4XNL A;  2N2L A;  4JCH A;  4LSE A;  2POR A;  4AYN A;  1Q9G A;  2LHF A;  2KDY A;  3AA6 A;  4KRA A;  5G26 A;  4RJW A;  5FVN A;  2W80 C;  2F1V A;  1HXT A;  4FT6 A;  7PRN A;  1YS5 A;  4G75 A;  2FGR A;  4Z3T A;  4FZN A;  4QQ1 A;  3HW9 A;  4AKM A;  2KZ7 B;  4LSH A;  3PRN A;  1MM5 A;  3FYX A;  4O4X A;  1GFN A;  1GFO A;  1GFP A;  2J1N A;  3HWB A;  4N59 A;  3GP6 A;  1ZHW A;  3DA4 A;  4BUM X;  5AFU L;  4FRT A;  3DA3 A;  4O49 A;  1HXU A;  3T0S A;  4RLB A;  3JTY A;  3LK3 B;  3UPG A;  3VZU X;  6PRN A;  2OMF A;  4GHB A;  4FSP A;  4RJX A;  3POQ A;  3SZV A;  2Y0H A;  1ZHT A;  1THQ A;  2GE4 A;  2ZLD A;  5PRN A;  3LK2 A;  3NSG A;  1MPF A;  3WI4 A;  5JDP A;  3SY9 A;  3VZT X;  4FMS A;  3AAA A;  3EMN X;  3LK4 1;  2XG6 A;  1GFM A;  1QJ9 A;  4FES A;  3KVD D;  3UAQ A;  3AA7 A;  4C69 X;  5AFU K;  2K0L A;  2J4U P;  2XE2 A;  1OPF A;  2QTK A;  2XE5 A;  3SY7 A;  5DL6 A;  1PHO A;  3POR A;  3POU A;  2ODJ A;  2LFU A;  3VZW X;  4AKR B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1GFNA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations