1GFP | Genus

Total Genus 107

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	107
sequence length	340
structure length	340
Chain Sequence	AEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYACLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transmembrane protein
source organism	Escherichia coli
publication title	Structural and functional characterization of OmpF porin mutants selected for larger pore size. I. Crystallographic analysis. pubmed doi rcsb
molecule keywords	MATRIX PORIN OUTER MEMBRANE PROTEIN F
total genus	107
structure length	340
sequence length	340
ec nomenclature
pdb deposition date	1996-05-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00267	Porin_1	Gram-negative porin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	1gfpA00

3HWBA 1OSMA 1GFNA 1PRNA 1OPFA 4LSEA 2QTKA 4KR8A 2K4TA 2ZFGA 3HW9A 3K19A 3UPGA 5JDPA 2XE2A 3POQA 3PORA 4D65A 4FMSA 2O4VA 3T20A 4LSIA 1MPFA 3VZUX 4FRXA 1GFQA 2Y0LA 3FYXA 5DL5A 3T24A 1HXUA 5PRNA 2XG6A 3SYSA 4RJWA 4RJXA 1GFMA 4D64A 3POXA 3WI4A 2PRNA 3UU2A 4FT6A 1PHOA 3POUA 5DL7A 2XE5A 4C69X 4FRTA 2J1NA 2XE3A 3WI5A 3JTYA 4LSFA 3SY9A 4D5UA 4FSPA 3NSGA 3SY7A 6PRNA 3EMNX 3SZVA 2FGRA 1BT9A 3VZWX 2PORA 4AUIA 2Y2XA 2FGQX 2OMFA 1H6S1 1GFOA 2ODJA 5FVNA 4JFBA 5DL8A 2Y0HA 4FSOA 2Y0KA 4FOZA 3SYBA 1GFPA 4GCSA 3VY9X 1BH3A 1HXXA 3T0SA 8PRNA 3A2SX 2ZLDA 3O0EA 3VY8X 3PRNA 4GCPA 4GCQA 3VZTX 7PRNA 4BUMX 4LSHA 1HXTA 5DL6A 2J4UP 2XE1A 4KRAA 4KR4A 3SZDA 1E54A
chains in the Genus database with same CATH superfamily

1IZNA 3HWBA 1OSMA 3AA6B 1GFNA 1YS5A 5T5FA 4AKRA 3HOLA 4CTDA 1PRNA 3VE1A 1OPFA 3LK3A 5GV0A 4LSEA 4PR7A 2QTKA 4AZLA 3GP6A 4C00A 4KR8A 2W81C 2K4TA 3A0BO 2ZFGA 3HW9A 3K19A 4K3CA 3PF1A 3UPGA 2JQYA 5JDPA 2XE2A 4G75A 3POQA 2KC0A 3NJTA 2WJQA 2W80C 3PORA 4FMSA 5E79O 4D65A 4JCHA 2O4VA 2F1TA 4O4XA 3AAEA 4B61A 3DWOX 1ZHTA 3RBHA 4C4VA 5GTHO 4N74A 2N2MA 3T20A 5EE2A 3AA7B 5ADXL 5G39A 4LSIA 1MPFA 3VZUX 2F1VA 2F1CX 2R88A 2GE4A 2N2LA 1GFQA 1Q9GA 2Y0LA 4FRXA 4AKMA 2LFUA 3FYXA 5DL5A 3T24A 4E1SA 1HXUA 4RLBA 3BS0A 5PRNA 5AFUL 4AYNA 4FQEA 3QRCA 2XG6A 3PGUA 3LK41 3C5OA 8PRNA 2MNHA 1BXWA 4N58A 3SYSA 4N59A 3PQSA 4RJWA 2JMMA 1GFMA 3QRAA 4GHBA 4RJXA 4RL9A 4XNLA 3DA3A 4D64A 4Z3TA 4IL6O 2R4NA 3POXA 3WI4A 2PRNA 3AAAB 3UU2A 2KXPA 4FT6A 3AA0B 5B66O 1PHOA 3KVDD 2KDYA 4FUVA 4PUXA 3POUA 4UB8O 3AA6A 2XE5A 2R4PA 5DL7A 4UB6O 4AYID 1QJ8A 4FRTA 4C69X 1ZHZA 2J1NA 2XE3A 3JTYA 2M07A 4LSFA 5D5DA 3WI5A 3SY9A 4AYMC 4F4BA 4D5UA 2AXTO 4FZMA 4O3YA 4XNKA 3TZGA 3VE2A 1Q9FA 2IWVA 4FSPA 2R4OA 3A0HO 3NSGA 3AA1B 1ZHWA 1QJ9A 4O3XB 3SY7A 6PRNA 3EMNX 3SZVA 5KAIO 2Y7SA 5G26A 1BT9A 4AYDC 3VZWX 4AFKA 2PORA 4AUIA 2Y2XA 2R8AA 1G90A 2ERVA 3AA7A 3LK2B 4O4UA 2FGQX 1P4TA 2OMFA 4O49A 1H6S1 2YNKA 3BRYA 2KZ7B 1GFOA 2ODJA 3G7GA 1IZNB 2WVPA 2XTRA 5FVNA 4AKRB 4JFBA 3WU2O 2YPVA 4AYEC 3LK3B 3PGRA 1T16A 5DL8A 5G3AA 2X27X 2Y0HA 5IYUA 5B5EO 3AAAA 1S5LO 2WJRA 1E54A 2Y0KA 3AA0A 4FSOA 4U9CA 4GF4A 2R4LA 4FZNA 4FOZA 3HOEA 5G38A 5GTIO 3SYBA 2X9KA 3UAQA 1GFPA 4GCSA 4RLCA 3JCUO 3PGSA 3AAEB 4N75A 4O3WA 5TISO 4C4VB 3VY9X 1BH3A 1HXXA 1ZHYA 4G76A 3DWNA 3PQUA 3AA1A 3T0SA 1MM5A 3LK42 4FZLA 3KZIO 1QJPA 4FESA 3A2SX 4PJ0O 3V8UA 1MM4A 3DZMA 2ZLDA 2MHLA 1THQA 2M06A 3O0EA 3PRNA 5KAFO 2K0LA 3VY8X 4GCPA 2R89A 2IWWA 5ADXK 3DA4A 5AFUK 4GCQA 3VZTX 7PRNA 2XMXA 4K3BA 2LHFA 4QQ1A 4BUMX 4O3ZA 4E1TA 4LSHA 5H2FO 1T1LA 3LK2A 1HXTA 2XTQA 5DL6A 2J4UP 1ORMA 2XE1A 1ZHXA 2KXPB 3BRZA 4KRAA 2KZ7A 4KR4A 3SZDA 2FGRA
chains in the Genus database with same CATH topology

1IZNA 3HWBA 1OSMA 3AA6B 1GFNA 1YS5A 5T5FA 4AKRA 3HOLA 1PRNA 3VE1A 1OPFA 3LK3A 5GV0A 4LSEA 4AZLA 2QTKA 3GP6A 4KR8A 2W81C 2K4TA 2ZFGA 3HW9A 3K19A 3UPGA 5JDPA 2XE2A 4G75A 3POQA 2KC0A 2W80C 3PORA 4FMSA 4D65A 4JCHA 2O4VA 2F1TA 4O4XA 3AAEA 4B61A 3RBHA 1ZHTA 3T20A 2N2MA 5EE2A 3AA7B 5ADXL 4LSIA 1MPFA 3VZUX 2F1VA 2GE4A 2N2LA 1GFQA 1Q9GA 2Y0LA 4FRXA 4AKMA 2LFUA 3FYXA 5DL5A 3T24A 4E1SA 1HXUA 4RLBA 5PRNA 5AFUL 4AYNA 3QRCA 2XG6A 3LK41 3C5OA 2MNHA 1BXWA 4N58A 3SYSA 4N59A 3PQSA 4RJWA 2JMMA 1GFMA 3QRAA 4GHBA 4RJXA 4RL9A 4XNLA 3DA3A 4D64A 4Z3TA 3POXA 3WI4A 2PRNA 3AAAB 3UU2A 2KXPA 4FT6A 3AA0B 1PHOA 3KVDD 2KDYA 4FUVA 4PUXA 3POUA 5DL7A 3AA6A 2XE5A 4AYID 4C69X 1QJ8A 4FRTA 1ZHZA 2J1NA 2XE3A 3JTYA 2M07A 4LSFA 5D5DA 3WI5A 3SY9A 4AYMC 4F4BA 4D5UA 4O3YA 4FZMA 4XNKA 3TZGA 3VE2A 1Q9FA 4FSPA 3NSGA 3AA1B 1ZHWA 1QJ9A 4O3XB 3SY7A 6PRNA 3EMNX 3SZVA 2Y7SA 5G26A 1BT9A 4AYDC 3VZWX 4AFKA 2PORA 4AUIA 2Y2XA 1G90A 2ERVA 3AA7A 3LK2B 4O4UA 2FGQX 1P4TA 2OMFA 4O49A 1H6S1 2YNKA 2KZ7B 1GFOA 2ODJA 3G7GA 1IZNB 2XTRA 5FVNA 4AKRB 4JFBA 2YPVA 3LK3B 5DL8A 2X27X 2Y0HA 5IYUA 3AAAA 3AA0A 1E54A 2Y0KA 4FSOA 4U9CA 4GF4A 4FZNA 4FOZA 3HOEA 3SYBA 3UAQA 1GFPA 4GCSA 4RLCA 4O3WA 3AAEB 3VY9X 1BH3A 1HXXA 1ZHYA 4G76A 3PQUA 3AA1A 3T0SA 1MM5A 3LK42 4FZLA 8PRNA 1QJPA 4FESA 3A2SX 4AYEC 3V8UA 1MM4A 2ZLDA 2MHLA 1THQA 2M06A 3O0EA 3PRNA 3VY8X 2K0LA 4GCPA 5ADXK 3DA4A 5AFUK 4GCQA 3VZTX 7PRNA 2XMXA 4QQ1A 2LHFA 4BUMX 4O3ZA 4E1TA 4LSHA 3LK2A 1HXTA 2XTQA 5DL6A 2J4UP 1ORMA 2XE1A 1ZHXA 2KXPB 4KRAA 4KR4A 2KZ7A 3SZDA 2FGRA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3HWB A;  1OSM A;  1GFN A;  1PRN A;  1OPF A;  4LSE A;  2QTK A;  4KR8 A;  2K4T A;  2ZFG A;  3HW9 A;  3K19 A;  3UPG A;  5JDP A;  2XE2 A;  3POQ A;  3POR A;  4D65 A;  4FMS A;  2O4V A;  3T20 A;  4LSI A;  1MPF A;  3VZU X;  4FRX A;  1GFQ A;  2Y0L A;  3FYX A;  5DL5 A;  3T24 A;  1HXU A;  5PRN A;  2XG6 A;  3SYS A;  4RJW A;  4RJX A;  1GFM A;  4D64 A;  3POX A;  3WI4 A;  2PRN A;  3UU2 A;  4FT6 A;  1PHO A;  3POU A;  5DL7 A;  2XE5 A;  4C69 X;  4FRT A;  2J1N A;  2XE3 A;  3WI5 A;  3JTY A;  4LSF A;  3SY9 A;  4D5U A;  4FSP A;  3NSG A;  3SY7 A;  6PRN A;  3EMN X;  3SZV A;  2FGR A;  1BT9 A;  3VZW X;  2POR A;  4AUI A;  2Y2X A;  2FGQ X;  2OMF A;  1H6S 1;  1GFO A;  2ODJ A;  5FVN A;  4JFB A;  5DL8 A;  2Y0H A;  4FSO A;  2Y0K A;  4FOZ A;  3SYB A;  1GFP A;  4GCS A;  3VY9 X;  1BH3 A;  1HXX A;  3T0S A;  8PRN A;  3A2S X;  2ZLD A;  3O0E A;  3VY8 X;  3PRN A;  4GCP A;  4GCQ A;  3VZT X;  7PRN A;  4BUM X;  4LSH A;  1HXT A;  5DL6 A;  2J4U P;  2XE1 A;  4KRA A;  4KR4 A;  3SZD A;  1E54 A; 
#chains in the Genus database with same CATH topology
 1IZN A;  3HWB A;  1OSM A;  3AA6 B;  1GFN A;  1YS5 A;  5T5F A;  4AKR A;  3HOL A;  4CTD A;  1PRN A;  3VE1 A;  1OPF A;  3LK3 A;  5GV0 A;  4LSE A;  4PR7 A;  2QTK A;  4AZL A;  3GP6 A;  4C00 A;  4KR8 A;  2W81 C;  2K4T A;  3A0B O;  2ZFG A;  3HW9 A;  3K19 A;  4K3C A;  3PF1 A;  3UPG A;  2JQY A;  5JDP A;  2XE2 A;  4G75 A;  3POQ A;  2KC0 A;  3NJT A;  2WJQ A;  2W80 C;  3POR A;  4FMS A;  5E79 O;  4D65 A;  4JCH A;  2O4V A;  2F1T A;  4O4X A;  3AAE A;  4B61 A;  3DWO X;  1ZHT A;  3RBH A;  4C4V A;  5GTH O;  4N74 A;  2N2M A;  3T20 A;  5EE2 A;  3AA7 B;  5ADX L;  5G39 A;  4LSI A;  1MPF A;  3VZU X;  2F1V A;  2F1C X;  2R88 A;  2GE4 A;  2N2L A;  1GFQ A;  1Q9G A;  2Y0L A;  4FRX A;  4AKM A;  2LFU A;  3FYX A;  5DL5 A;  3T24 A;  4E1S A;  1HXU A;  4RLB A;  3BS0 A;  5PRN A;  5AFU L;  4AYN A;  4FQE A;  3QRC A;  2XG6 A;  3PGU A;  3LK4 1;  3C5O A;  8PRN A;  2MNH A;  1BXW A;  4N58 A;  3SYS A;  4N59 A;  3PQS A;  4RJW A;  2JMM A;  1GFM A;  3QRA A;  4GHB A;  4RJX A;  4RL9 A;  4XNL A;  3DA3 A;  4D64 A;  4Z3T A;  4IL6 O;  2R4N A;  3POX A;  3WI4 A;  2PRN A;  3AAA B;  3UU2 A;  2KXP A;  4FT6 A;  3AA0 B;  5B66 O;  1PHO A;  3KVD D;  2KDY A;  4FUV A;  4PUX A;  3POU A;  4UB8 O;  3AA6 A;  2XE5 A;  2R4P A;  5DL7 A;  4UB6 O;  4AYI D;  1QJ8 A;  4FRT A;  4C69 X;  1ZHZ A;  2J1N A;  2XE3 A;  3JTY A;  2M07 A;  4LSF A;  5D5D A;  3WI5 A;  3SY9 A;  4AYM C;  4F4B A;  4D5U A;  2AXT O;  4FZM A;  4O3Y A;  4XNK A;  3TZG A;  3VE2 A;  1Q9F A;  2IWV A;  4FSP A;  2R4O A;  3A0H O;  3NSG A;  3AA1 B;  1ZHW A;  1QJ9 A;  4O3X B;  3SY7 A;  6PRN A;  3EMN X;  3SZV A;  5KAI O;  2Y7S A;  5G26 A;  1BT9 A;  4AYD C;  3VZW X;  4AFK A;  2POR A;  4AUI A;  2Y2X A;  2R8A A;  1G90 A;  2ERV A;  3AA7 A;  3LK2 B;  4O4U A;  2FGQ X;  1P4T A;  2OMF A;  4O49 A;  1H6S 1;  2YNK A;  3BRY A;  2KZ7 B;  1GFO A;  2ODJ A;  3G7G A;  1IZN B;  2WVP A;  2XTR A;  5FVN A;  4AKR B;  4JFB A;  3WU2 O;  2YPV A;  4AYE C;  3LK3 B;  3PGR A;  1T16 A;  5DL8 A;  5G3A A;  2X27 X;  2Y0H A;  5IYU A;  5B5E O;  3AAA A;  1S5L O;  2WJR A;  1E54 A;  2Y0K A;  3AA0 A;  4FSO A;  4U9C A;  4GF4 A;  2R4L A;  4FZN A;  4FOZ A;  3HOE A;  5G38 A;  5GTI O;  3SYB A;  2X9K A;  3UAQ A;  1GFP A;  4GCS A;  4RLC A;  3JCU O;  3PGS A;  3AAE B;  4N75 A;  4O3W A;  5TIS O;  4C4V B;  3VY9 X;  1BH3 A;  1HXX A;  1ZHY A;  4G76 A;  3DWN A;  3PQU A;  3AA1 A;  3T0S A;  1MM5 A;  3LK4 2;  4FZL A;  3KZI O;  1QJP A;  4FES A;  3A2S X;  4PJ0 O;  3V8U A;  1MM4 A;  3DZM A;  2ZLD A;  2MHL A;  1THQ A;  2M06 A;  3O0E A;  3PRN A;  5KAF O;  2K0L A;  3VY8 X;  4GCP A;  2R89 A;  2IWW A;  5ADX K;  3DA4 A;  5AFU K;  4GCQ A;  3VZT X;  7PRN A;  2XMX A;  4K3B A;  2LHF A;  4QQ1 A;  4BUM X;  4O3Z A;  4E1T A;  4LSH A;  5H2F O;  1T1L A;  3LK2 A;  1HXT A;  2XTQ A;  5DL6 A;  2J4U P;  1ORM A;  2XE1 A;  1ZHX A;  2KXP B;  3BRZ A;  4KRA A;  2KZ7 A;  4KR4 A;  3SZD A;  2FGR A; 
#chains in the Genus database with same CATH homology
 1IZN A;  3HWB A;  1OSM A;  3AA6 B;  1GFN A;  1YS5 A;  5T5F A;  4AKR A;  3HOL A;  1PRN A;  3VE1 A;  1OPF A;  3LK3 A;  5GV0 A;  4LSE A;  4AZL A;  2QTK A;  3GP6 A;  4KR8 A;  2W81 C;  2K4T A;  2ZFG A;  3HW9 A;  3K19 A;  3UPG A;  5JDP A;  2XE2 A;  4G75 A;  3POQ A;  2KC0 A;  2W80 C;  3POR A;  4FMS A;  4D65 A;  4JCH A;  2O4V A;  2F1T A;  4O4X A;  3AAE A;  4B61 A;  3RBH A;  1ZHT A;  3T20 A;  2N2M A;  5EE2 A;  3AA7 B;  5ADX L;  4LSI A;  1MPF A;  3VZU X;  2F1V A;  2GE4 A;  2N2L A;  1GFQ A;  1Q9G A;  2Y0L A;  4FRX A;  4AKM A;  2LFU A;  3FYX A;  5DL5 A;  3T24 A;  4E1S A;  1HXU A;  4RLB A;  5PRN A;  5AFU L;  4AYN A;  3QRC A;  2XG6 A;  3LK4 1;  3C5O A;  2MNH A;  1BXW A;  4N58 A;  3SYS A;  4N59 A;  3PQS A;  4RJW A;  2JMM A;  1GFM A;  3QRA A;  4GHB A;  4RJX A;  4RL9 A;  4XNL A;  3DA3 A;  4D64 A;  4Z3T A;  3POX A;  3WI4 A;  2PRN A;  3AAA B;  3UU2 A;  2KXP A;  4FT6 A;  3AA0 B;  1PHO A;  3KVD D;  2KDY A;  4FUV A;  4PUX A;  3POU A;  5DL7 A;  3AA6 A;  2XE5 A;  4AYI D;  4C69 X;  1QJ8 A;  4FRT A;  1ZHZ A;  2J1N A;  2XE3 A;  3JTY A;  2M07 A;  4LSF A;  5D5D A;  3WI5 A;  3SY9 A;  4AYM C;  4F4B A;  4D5U A;  4O3Y A;  4FZM A;  4XNK A;  3TZG A;  3VE2 A;  1Q9F A;  4FSP A;  3NSG A;  3AA1 B;  1ZHW A;  1QJ9 A;  4O3X B;  3SY7 A;  6PRN A;  3EMN X;  3SZV A;  2Y7S A;  5G26 A;  1BT9 A;  4AYD C;  3VZW X;  4AFK A;  2POR A;  4AUI A;  2Y2X A;  1G90 A;  2ERV A;  3AA7 A;  3LK2 B;  4O4U A;  2FGQ X;  1P4T A;  2OMF A;  4O49 A;  1H6S 1;  2YNK A;  2KZ7 B;  1GFO A;  2ODJ A;  3G7G A;  1IZN B;  2XTR A;  5FVN A;  4AKR B;  4JFB A;  2YPV A;  3LK3 B;  5DL8 A;  2X27 X;  2Y0H A;  5IYU A;  3AAA A;  3AA0 A;  1E54 A;  2Y0K A;  4FSO A;  4U9C A;  4GF4 A;  4FZN A;  4FOZ A;  3HOE A;  3SYB A;  3UAQ A;  1GFP A;  4GCS A;  4RLC A;  4O3W A;  3AAE B;  3VY9 X;  1BH3 A;  1HXX A;  1ZHY A;  4G76 A;  3PQU A;  3AA1 A;  3T0S A;  1MM5 A;  3LK4 2;  4FZL A;  8PRN A;  1QJP A;  4FES A;  3A2S X;  4AYE C;  3V8U A;  1MM4 A;  2ZLD A;  2MHL A;  1THQ A;  2M06 A;  3O0E A;  3PRN A;  3VY8 X;  2K0L A;  4GCP A;  5ADX K;  3DA4 A;  5AFU K;  4GCQ A;  3VZT X;  7PRN A;  2XMX A;  4QQ1 A;  2LHF A;  4BUM X;  4O3Z A;  4E1T A;  4LSH A;  3LK2 A;  1HXT A;  2XTQ A;  5DL6 A;  2J4U P;  1ORM A;  2XE1 A;  1ZHX A;  2KXP B;  4KRA A;  4KR4 A;  2KZ7 A;  3SZD A;  2FGR A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1GFPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations