1HXU | Genus

Total Genus 103

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	103
sequence length	340
structure length	340
Chain Sequence	AEIYNKDGNKVDLYGKAKGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVKRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Membrane protein
source organism	Escherichia coli
publication title	Role of charged residues at the OmpF porin channel constriction probed by mutagenesis and simulation. pubmed doi rcsb
molecule keywords	OUTER MEMBRANE PROTEIN F
total genus	103
structure length	340
sequence length	340
ec nomenclature
pdb deposition date	2001-01-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00267	Porin_1	Gram-negative porin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	1hxuA00

2XG6A 4GCQA 4JFBA 3T20A 2Y0HA 8PRNA 5FVNA 7PRNA 4FSOA 1GFPA 2PRNA 3POQA 3POUA 2XE1A 3SYSA 1HXUA 2XE3A 1BT9A 2J4UP 5DL7A 1OPFA 2Y0KA 1GFQA 6PRNA 2ZLDA 4LSHA 4KR8A 3UU2A 3T0SA 3EMNX 4GCPA 5DL6A 1GFMA 4RJXA 4FRXA 4D64A 2Y2XA 4KR4A 3K19A 5DL5A 3SYBA 4FMSA 5JDPA 2J1NA 3JTYA 3HWBA 4FOZA 4D65A 1GFOA 4FT6A 1OSMA 4D5UA 3SY9A 3VZTX 1E54A 5DL8A 2XE2A 4FRTA 4RJWA 5PRNA 3O0EA 3SY7A 4KRAA 3POXA 4LSFA 2ODJA 2OMFA 3T24A 4GCSA 3VZUX 1PHOA 3FYXA 1BH3A 4BUMX 2K4TA 4AUIA 3VY9X 2PORA 3VY8X 2XE5A 3PRNA 4FSPA 3WI4A 1H6S1 2Y0LA 3SZDA 3WI5A 2FGQX 1GFNA 3PORA 4LSIA 1MPFA 2FGRA 2QTKA 1HXXA 2O4VA 3A2SX 1HXTA 3NSGA 3UPGA 2ZFGA 4LSEA 4C69X 3VZWX 1PRNA 3HW9A 3SZVA
chains in the Genus database with same CATH superfamily

2XG6A 4N75A 3PQUA 5IYUA 1QJ9A 3LK3B 4GCQA 4F4BA 2R4NA 4IL6O 4AYNA 3KZIO 5B66O 3PGRA 5H2FO 1Q9FA 2M06A 4JFBA 4XNKA 3NJTA 5G39A 3T20A 2JQYA 4FZLA 4O3ZA 2Y0HA 3SZVA 3HOLA 2KXPA 5FVNA 8PRNA 5KAIO 7PRNA 3AAEA 2X27X 1GFPA 4FSOA 2PRNA 4AFKA 4C4VA 3POQA 3POUA 4PR7A 5T5FA 2XE1A 4RLBA 4AKRA 2KXPB 2F1VA 3SYSA 4E1TA 1HXUA 2YNKA 2XE3A 3PF1A 2WJQA 4QQ1A 4UB6O 2N2LA 2R4OA 5G3AA 1BT9A 4AYDC 2J4UP 5DL7A 5B5EO 2F1TA 1QJ8A 1T16A 2Y7SA 1ORMA 2XMXA 1OPFA 3AA0A 3LK2A 4UB8O 1IZNA 3AA6A 4U9CA 2YPVA 3G7GA 2R4LA 2Y0KA 1ZHYA 2IWVA 1GFQA 6PRNA 2ZLDA 4LSHA 1MM5A 4KR8A 2IWWA 3UU2A 2KDYA 3T0SA 3AAAA 3EMNX 4GCPA 4Z3TA 3PGUA 3V8UA 4FZMA 4CTDA 5DL6A 1GFMA 3DWOX 4RJXA 3BS0A 4O3YA 4FRXA 4G76A 4PJ0O 5GV0A 4RL9A 4B61A 4D64A 2Y2XA 3VE2A 4O49A 3C5OA 4FESA 3K19A 4KR4A 2R88A 5DL5A 3SYBA 4C00A 2X9KA 3BRYA 3AAEB 2R8AA 4FMSA 4C4VB 5JDPA 2W81C 4PUXA 2J1NA 1THQA 3RBHA 2KZ7A 3JCUO 3JTYA 4JCHA 3HWBA 4AKRB 2WJRA 5G26A 5GTHO 4E1SA 3GP6A 5KAFO 1ZHXA 3PQSA 4FOZA 3UAQA 3DA4A 4O4XA 4D65A 2R89A 1GFOA 2AXTO 4FT6A 4FZNA 4N58A 5ADXK 2KZ7B 1OSMA 1QJPA 5GTIO 2F1CX 3AA7A 3SY9A 4D5UA 2LFUA 3VZTX 2WVPA 4XNLA 5EE2A 4N74A 2W80C 1E54A 5DL8A 3AA0B 3LK2B 1IZNB 2XE2A 3AA6B 4AYEC 4FRTA 4RJWA 3AA1A 5PRNA 3A0BO 1YS5A 3O0EA 4AYID 1BXWA 5AFUL 3SY7A 5TISO 4KRAA 3DZMA 5D5DA 3TZGA 3LK41 3POXA 3AAAB 4LSFA 1ZHTA 3DWNA 2ODJA 2OMFA 3BRZA 1T1LA 2ERVA 3KVDD 4GCSA 4GF4A 4FUVA 5G38A 3T24A 3VZUX 5ADXL 1PHOA 4AZLA 3FYXA 1BH3A 5E79O 4BUMX 4G75A 4AKMA 5AFUK 2K4TA 3DA3A 4O4UA 1P4TA 4AUIA 3VY9X 2PORA 4O3XB 3HOEA 3VY8X 2XE5A 1ZHWA 2JMMA 3PRNA 4FSPA 3WI4A 2KC0A 1H6S1 4AYMC 3LK42 1S5LO 2Y0LA 4K3BA 2GE4A 3SZDA 2FGQX 3WI5A 3VE1A 1Q9GA 3QRCA 1GFNA 3PORA 4LSIA 1MPFA 4GHBA 2FGRA 4K3CA 2QTKA 1HXXA 2O4VA 3A2SX 1MM4A 1HXTA 3NSGA 4O3WA 3AA7B 3UPGA 2MNHA 2R4PA 2XTRA 3A0HO 2N2MA 1ZHZA 3PGSA 2ZFGA 4LSEA 3AA1B 4N59A 4C69X 3VZWX 2MHLA 2XTQA 3LK3A 4FQEA 2K0LA 3WU2O 1G90A 1PRNA 4RLCA 3HW9A 2LHFA 3QRAA 2M07A
chains in the Genus database with same CATH topology

2XG6A 3PQUA 1QJ9A 3LK3B 4GCQA 4F4BA 4AYNA 1Q9FA 2M06A 4JFBA 4XNKA 3T20A 4FZLA 4O3ZA 2Y0HA 3SZVA 3HOLA 2KXPA 5FVNA 8PRNA 7PRNA 3AAEA 2X27X 1GFPA 4FSOA 2PRNA 4AFKA 3POQA 3POUA 5T5FA 2XE1A 4RLBA 4AKRA 2KXPB 2F1VA 3SYSA 4E1TA 1HXUA 2YNKA 2XE3A 4QQ1A 2N2LA 4AYDC 1BT9A 2J4UP 5DL7A 2F1TA 1QJ8A 2Y7SA 1ORMA 2XMXA 1OPFA 3AA0A 3LK2A 1IZNA 3AA6A 4U9CA 2YPVA 3G7GA 2Y0KA 1ZHYA 1GFQA 6PRNA 2ZLDA 4LSHA 1MM5A 4KR8A 3UU2A 2KDYA 3T0SA 3AAAA 3EMNX 4GCPA 4Z3TA 3V8UA 4FZMA 5DL6A 1GFMA 4RJXA 4O3YA 4FRXA 4G76A 5GV0A 4RL9A 4B61A 4D64A 2Y2XA 3VE2A 4O49A 3C5OA 4FESA 3K19A 4KR4A 5DL5A 3SYBA 3AAEB 4FMSA 5JDPA 2W81C 4PUXA 2J1NA 1THQA 3RBHA 2KZ7A 3JTYA 4JCHA 4AKRB 3HWBA 5IYUA 5G26A 4E1SA 3GP6A 3UAQA 1ZHXA 3PQSA 4FOZA 3DA4A 4O4XA 4D65A 1GFOA 4N58A 4FT6A 4FZNA 5ADXK 2KZ7B 1OSMA 1QJPA 3AA7A 4D5UA 3SY9A 2LFUA 3VZTX 4XNLA 5EE2A 2W80C 1E54A 5DL8A 3AA0B 3LK2B 1IZNB 2XE2A 3AA6B 4AYEC 4FRTA 4RJWA 3AA1A 5PRNA 1YS5A 3O0EA 4AYID 1BXWA 5AFUL 3SY7A 4KRAA 5D5DA 3TZGA 3LK41 3POXA 3AAAB 4LSFA 1ZHTA 2ODJA 2OMFA 3KVDD 4GF4A 2ERVA 3T24A 4GCSA 3VZUX 4FUVA 5ADXL 1PHOA 4AZLA 3FYXA 1BH3A 4BUMX 5AFUK 4G75A 4AKMA 2K4TA 3DA3A 4O4UA 1P4TA 4AUIA 3VY9X 2PORA 4O3XB 3HOEA 3VY8X 2XE5A 1ZHWA 2JMMA 3PRNA 4FSPA 3WI4A 2KC0A 1H6S1 4AYMC 3LK42 2Y0LA 3SZDA 2GE4A 3WI5A 2FGQX 3VE1A 1Q9GA 3QRCA 1GFNA 3PORA 4LSIA 1MPFA 4GHBA 2FGRA 2QTKA 1HXXA 2O4VA 3A2SX 1MM4A 1HXTA 3NSGA 4O3WA 3AA7B 3UPGA 2MNHA 2XTRA 2N2MA 1ZHZA 2ZFGA 4LSEA 3AA1B 4N59A 4C69X 3VZWX 2MHLA 2XTQA 3LK3A 2K0LA 1G90A 1PRNA 4RLCA 3HW9A 2LHFA 3QRAA 2M07A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2XG6 A;  4GCQ A;  4JFB A;  3T20 A;  2Y0H A;  8PRN A;  5FVN A;  7PRN A;  4FSO A;  1GFP A;  2PRN A;  3POQ A;  3POU A;  2XE1 A;  3SYS A;  1HXU A;  2XE3 A;  1BT9 A;  2J4U P;  5DL7 A;  1OPF A;  2Y0K A;  1GFQ A;  6PRN A;  2ZLD A;  4LSH A;  4KR8 A;  3UU2 A;  3T0S A;  3EMN X;  4GCP A;  5DL6 A;  1GFM A;  4RJX A;  4FRX A;  4D64 A;  2Y2X A;  4KR4 A;  3K19 A;  5DL5 A;  3SYB A;  4FMS A;  5JDP A;  2J1N A;  3JTY A;  3HWB A;  4FOZ A;  4D65 A;  1GFO A;  4FT6 A;  1OSM A;  4D5U A;  3SY9 A;  3VZT X;  1E54 A;  5DL8 A;  2XE2 A;  4FRT A;  4RJW A;  5PRN A;  3O0E A;  3SY7 A;  4KRA A;  3POX A;  4LSF A;  2ODJ A;  2OMF A;  3T24 A;  4GCS A;  3VZU X;  1PHO A;  3FYX A;  1BH3 A;  4BUM X;  2K4T A;  4AUI A;  3VY9 X;  2POR A;  3VY8 X;  2XE5 A;  3PRN A;  4FSP A;  3WI4 A;  1H6S 1;  2Y0L A;  3SZD A;  3WI5 A;  2FGQ X;  1GFN A;  3POR A;  4LSI A;  1MPF A;  2FGR A;  2QTK A;  1HXX A;  2O4V A;  3A2S X;  1HXT A;  3NSG A;  3UPG A;  2ZFG A;  4LSE A;  4C69 X;  3VZW X;  1PRN A;  3HW9 A;  3SZV A; 
#chains in the Genus database with same CATH topology
 2XG6 A;  4N75 A;  3PQU A;  5IYU A;  1QJ9 A;  3LK3 B;  4GCQ A;  4F4B A;  2R4N A;  4IL6 O;  4AYN A;  3KZI O;  5B66 O;  3PGR A;  5H2F O;  1Q9F A;  2M06 A;  4JFB A;  4XNK A;  3NJT A;  5G39 A;  3T20 A;  2JQY A;  4FZL A;  4O3Z A;  2Y0H A;  3SZV A;  3HOL A;  2KXP A;  5FVN A;  8PRN A;  5KAI O;  7PRN A;  3AAE A;  2X27 X;  1GFP A;  4FSO A;  2PRN A;  4AFK A;  4C4V A;  3POQ A;  3POU A;  4PR7 A;  5T5F A;  2XE1 A;  4RLB A;  4AKR A;  2KXP B;  2F1V A;  3SYS A;  4E1T A;  1HXU A;  2YNK A;  2XE3 A;  3PF1 A;  2WJQ A;  4QQ1 A;  4UB6 O;  2N2L A;  2R4O A;  5G3A A;  1BT9 A;  4AYD C;  2J4U P;  5DL7 A;  5B5E O;  2F1T A;  1QJ8 A;  1T16 A;  2Y7S A;  1ORM A;  2XMX A;  1OPF A;  3AA0 A;  3LK2 A;  4UB8 O;  1IZN A;  3AA6 A;  4U9C A;  2YPV A;  3G7G A;  2R4L A;  2Y0K A;  1ZHY A;  2IWV A;  1GFQ A;  6PRN A;  2ZLD A;  4LSH A;  1MM5 A;  4KR8 A;  2IWW A;  3UU2 A;  2KDY A;  3T0S A;  3AAA A;  3EMN X;  4GCP A;  4Z3T A;  3PGU A;  3V8U A;  4FZM A;  4CTD A;  5DL6 A;  1GFM A;  3DWO X;  4RJX A;  3BS0 A;  4O3Y A;  4FRX A;  4G76 A;  4PJ0 O;  5GV0 A;  4RL9 A;  4B61 A;  4D64 A;  2Y2X A;  3VE2 A;  4O49 A;  3C5O A;  4FES A;  3K19 A;  4KR4 A;  2R88 A;  5DL5 A;  3SYB A;  4C00 A;  2X9K A;  3BRY A;  3AAE B;  2R8A A;  4FMS A;  4C4V B;  5JDP A;  2W81 C;  4PUX A;  2J1N A;  1THQ A;  3RBH A;  2KZ7 A;  3JCU O;  3JTY A;  4JCH A;  3HWB A;  4AKR B;  2WJR A;  5G26 A;  5GTH O;  4E1S A;  3GP6 A;  5KAF O;  1ZHX A;  3PQS A;  4FOZ A;  3UAQ A;  3DA4 A;  4O4X A;  4D65 A;  2R89 A;  1GFO A;  2AXT O;  4FT6 A;  4FZN A;  4N58 A;  5ADX K;  2KZ7 B;  1OSM A;  1QJP A;  5GTI O;  2F1C X;  3AA7 A;  3SY9 A;  4D5U A;  2LFU A;  3VZT X;  2WVP A;  4XNL A;  5EE2 A;  4N74 A;  2W80 C;  1E54 A;  5DL8 A;  3AA0 B;  3LK2 B;  1IZN B;  2XE2 A;  3AA6 B;  4AYE C;  4FRT A;  4RJW A;  3AA1 A;  5PRN A;  3A0B O;  1YS5 A;  3O0E A;  4AYI D;  1BXW A;  5AFU L;  3SY7 A;  5TIS O;  4KRA A;  3DZM A;  5D5D A;  3TZG A;  3LK4 1;  3POX A;  3AAA B;  4LSF A;  1ZHT A;  3DWN A;  2ODJ A;  2OMF A;  3BRZ A;  1T1L A;  2ERV A;  3KVD D;  4GCS A;  4GF4 A;  4FUV A;  5G38 A;  3T24 A;  3VZU X;  5ADX L;  1PHO A;  4AZL A;  3FYX A;  1BH3 A;  5E79 O;  4BUM X;  4G75 A;  4AKM A;  5AFU K;  2K4T A;  3DA3 A;  4O4U A;  1P4T A;  4AUI A;  3VY9 X;  2POR A;  4O3X B;  3HOE A;  3VY8 X;  2XE5 A;  1ZHW A;  2JMM A;  3PRN A;  4FSP A;  3WI4 A;  2KC0 A;  1H6S 1;  4AYM C;  3LK4 2;  1S5L O;  2Y0L A;  4K3B A;  2GE4 A;  3SZD A;  2FGQ X;  3WI5 A;  3VE1 A;  1Q9G A;  3QRC A;  1GFN A;  3POR A;  4LSI A;  1MPF A;  4GHB A;  2FGR A;  4K3C A;  2QTK A;  1HXX A;  2O4V A;  3A2S X;  1MM4 A;  1HXT A;  3NSG A;  4O3W A;  3AA7 B;  3UPG A;  2MNH A;  2R4P A;  2XTR A;  3A0H O;  2N2M A;  1ZHZ A;  3PGS A;  2ZFG A;  4LSE A;  3AA1 B;  4N59 A;  4C69 X;  3VZW X;  2MHL A;  2XTQ A;  3LK3 A;  4FQE A;  2K0L A;  3WU2 O;  1G90 A;  1PRN A;  4RLC A;  3HW9 A;  2LHF A;  3QRA A;  2M07 A; 
#chains in the Genus database with same CATH homology
 2XG6 A;  3PQU A;  1QJ9 A;  3LK3 B;  4GCQ A;  4F4B A;  4AYN A;  1Q9F A;  2M06 A;  4JFB A;  4XNK A;  3T20 A;  4FZL A;  4O3Z A;  2Y0H A;  3SZV A;  3HOL A;  2KXP A;  5FVN A;  8PRN A;  7PRN A;  3AAE A;  2X27 X;  1GFP A;  4FSO A;  2PRN A;  4AFK A;  3POQ A;  3POU A;  5T5F A;  2XE1 A;  4RLB A;  4AKR A;  2KXP B;  2F1V A;  3SYS A;  4E1T A;  1HXU A;  2YNK A;  2XE3 A;  4QQ1 A;  2N2L A;  4AYD C;  1BT9 A;  2J4U P;  5DL7 A;  2F1T A;  1QJ8 A;  2Y7S A;  1ORM A;  2XMX A;  1OPF A;  3AA0 A;  3LK2 A;  1IZN A;  3AA6 A;  4U9C A;  2YPV A;  3G7G A;  2Y0K A;  1ZHY A;  1GFQ A;  6PRN A;  2ZLD A;  4LSH A;  1MM5 A;  4KR8 A;  3UU2 A;  2KDY A;  3T0S A;  3AAA A;  3EMN X;  4GCP A;  4Z3T A;  3V8U A;  4FZM A;  5DL6 A;  1GFM A;  4RJX A;  4O3Y A;  4FRX A;  4G76 A;  5GV0 A;  4RL9 A;  4B61 A;  4D64 A;  2Y2X A;  3VE2 A;  4O49 A;  3C5O A;  4FES A;  3K19 A;  4KR4 A;  5DL5 A;  3SYB A;  3AAE B;  4FMS A;  5JDP A;  2W81 C;  4PUX A;  2J1N A;  1THQ A;  3RBH A;  2KZ7 A;  3JTY A;  4JCH A;  4AKR B;  3HWB A;  5IYU A;  5G26 A;  4E1S A;  3GP6 A;  3UAQ A;  1ZHX A;  3PQS A;  4FOZ A;  3DA4 A;  4O4X A;  4D65 A;  1GFO A;  4N58 A;  4FT6 A;  4FZN A;  5ADX K;  2KZ7 B;  1OSM A;  1QJP A;  3AA7 A;  4D5U A;  3SY9 A;  2LFU A;  3VZT X;  4XNL A;  5EE2 A;  2W80 C;  1E54 A;  5DL8 A;  3AA0 B;  3LK2 B;  1IZN B;  2XE2 A;  3AA6 B;  4AYE C;  4FRT A;  4RJW A;  3AA1 A;  5PRN A;  1YS5 A;  3O0E A;  4AYI D;  1BXW A;  5AFU L;  3SY7 A;  4KRA A;  5D5D A;  3TZG A;  3LK4 1;  3POX A;  3AAA B;  4LSF A;  1ZHT A;  2ODJ A;  2OMF A;  3KVD D;  4GF4 A;  2ERV A;  3T24 A;  4GCS A;  3VZU X;  4FUV A;  5ADX L;  1PHO A;  4AZL A;  3FYX A;  1BH3 A;  4BUM X;  5AFU K;  4G75 A;  4AKM A;  2K4T A;  3DA3 A;  4O4U A;  1P4T A;  4AUI A;  3VY9 X;  2POR A;  4O3X B;  3HOE A;  3VY8 X;  2XE5 A;  1ZHW A;  2JMM A;  3PRN A;  4FSP A;  3WI4 A;  2KC0 A;  1H6S 1;  4AYM C;  3LK4 2;  2Y0L A;  3SZD A;  2GE4 A;  3WI5 A;  2FGQ X;  3VE1 A;  1Q9G A;  3QRC A;  1GFN A;  3POR A;  4LSI A;  1MPF A;  4GHB A;  2FGR A;  2QTK A;  1HXX A;  2O4V A;  3A2S X;  1MM4 A;  1HXT A;  3NSG A;  4O3W A;  3AA7 B;  3UPG A;  2MNH A;  2XTR A;  2N2M A;  1ZHZ A;  2ZFG A;  4LSE A;  3AA1 B;  4N59 A;  4C69 X;  3VZW X;  2MHL A;  2XTQ A;  3LK3 A;  2K0L A;  1G90 A;  1PRN A;  4RLC A;  3HW9 A;  2LHF A;  3QRA A;  2M07 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1HXUA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations