1ORMA

Nmr fold of the outer membrane protein ompx in dhpc micelles
Total Genus 0

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
0
sequence length
148
structure length
148
Chain Sequence
ATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYO2 (46-48)O1 (35-37)TIV4 (51-54)TIV6 (55-58)TIV7 (73-76)S3 (83-86)TIV9 (95-98)TIV12 (131-134)Updating...
connected with : NaN
molecule tags Membrane protein
source organism Escherichia coli
publication title TRANSVERSE RELAXATION-OPTIMIZED NMR SPECTROSCOPY WITH THE OUTER MEMBRANE PROTEIN OMPX IN DIHEXANOYL PHOSPHATIDYLCHOLINE MICELLES
pubmed doi rcsb
molecule keywords Outer membrane protein X
structure length 148
sequence length 148
ec nomenclature
pdb deposition date 2003-03-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 1ormA00
1THQA 1MM5A 2M06A 3G7GA 3GP6A 2M07A 1QJ8A 4RLCA 1Q9FA 2N2LA 2F1VA 1ORMA 2JMMA 1Q9GA 3QRAA 1G90A 1BXWA 2K0LA 2X27X 1MM4A 1P4TA 2N2MA 2ERVA 1QJ9A 2GE4A 3QRCA 2MNHA 3C5OA 4PUXA 2MHLA 2LHFA 2F1TA 1QJPA
chains in the Genus database with same CATH superfamily
1IZNA 1ZHTA 2QTKA 1THQA 1MM5A 4GCSA 3T0SA 2ZFGA 3AAEB 5H2FO 2R4PA 2AXTO 3PGUA 4C00A 4C4VB 4JCHA 4KR8A 4O3XB 4CTDA 4KR4A 4AUIA 4RLCA 3WU2O 1Q9FA 3VY9X 4GCPA 1HXUA 2F1VA 4UB6O 4B61A 5IYUA 5ADXK 1ORMA 2WJQA 3A2SX 2XTRA 3UU2A 3KVDD 1S5LO 2K0LA 4BUMX 5AFUK 3VZWX 2JQYA 2KZ7A 1HXTA 3AA1A 1ZHYA 2J4UP 2YPVA 5E79O 3VE2A 4G75A 3AAAA 3T24A 3EMNX 2N2MA 1QJ9A 1ZHZA 3AAEA 4GCQA 5TISO 4PUXA 3T20A 4FT6A 3PORA 4FZLA 3POXA 4C4VA 5JDPA 4AZLA 4GF4A 4LSEA 2R4NA 1ZHXA 2ODJA 2XTQA 3PGSA 3SY9A 2W81C 3AA0B 3UPGA 1OSMA 3DWOX 4K3CA 4FOZA 2Y7SA 2K4TA 2R4LA 4O49A 1QJ8A 4JFBA 5G26A 3A0HO 4AYMC 2O4VA 1BT9A 2J1NA 2R88A 4RJXA 4KRAA 4E1SA 2Y0KA 5B66O 4AYNA 4UB8O 4FQEA 1HXXA 5DL5A 3LK41 2R89A 4FSPA 1BH3A 4D64A 1G90A 2XE3A 7PRNA 3K19A 3HW9A 2R4OA 5GTIO 3V8UA 3WI5A 3TZGA 4FUVA 3AA6B 2LFUA 3JTYA 3LK2B 3POQA 4FMSA 5G38A 5B5EO 3DA3A 1P4TA 2XE1A 2KXPB 3AA7A 2ERVA 4U9CA 3VZUX 4AYEC 5GTHO 3QRCA 3AA0A 4D65A 3DZMA 4GHBA 4C69X 2MHLA 2XE5A 3JCUO 3QRAA 3HOEA 4N74A 4O3ZA 4PJ0O 3VY8X 2FGRA 4LSIA 1GFQA 3WI4A 4E1TA 2M06A 3G7GA 4FRTA 4FRXA 4O3YA 2M07A 3PRNA 4XNKA 1OPFA 2PRNA 3PF1A 3SZDA 3VE1A 1T1LA 4PR7A 2Y2XA 3PQSA 3O0EA 3RBHA 4QQ1A 4AFKA 4IL6O 4FZNA 3VZTX 2F1CX 5PRNA 4AYID 3LK3B 3AA6A 3LK2A 1Q9GA 2PORA 2XMXA 1BXWA 2XE2A 2KXPA 4K3BA 4O3WA 5DL7A 8PRNA 4LSHA 3BRZA 3UAQA 4FZMA 1ZHWA 3AA7B 3AAAB 2GE4A 3NSGA 4G76A 5T5FA 2MNHA 3C5OA 3SY7A 2W80C 2LHFA 2F1TA 2IWWA 4N75A 3LK42 5G3AA 4AKRB 3GP6A 3PGRA 3NJTA 1GFNA 3LK3A 2Y0LA 3DA4A 4O4UA 5D5DA 3A0BO 2WJRA 4O4XA 1IZNB 2IWVA 4F4BA 5GV0A 4RLBA 3HWBA 5FVNA 6PRNA 4D5UA 4FSOA 2OMFA 2FGQX 1E54A 2N2LA 1H6S1 2WVPA 1MPFA 2Y0HA 3POUA 4N59A 4AKMA 4AYDC 2JMMA 3HOLA 1T16A 2YNKA 3KZIO 4Z3TA 5G39A 4RJWA 4N58A 5KAFO 1PRNA 2X27X 3BS0A 3PQUA 5ADXL 3SYBA 3FYXA 1GFMA 1PHOA 2XG6A 4RL9A 5EE2A 2KDYA 1MM4A 1YS5A 5DL6A 3SZVA 5AFUL 1GFOA 4AKRA 2X9KA 5DL8A 1GFPA 2KC0A 2R8AA 4FESA 4LSFA 3BRYA 4XNLA 2KZ7B 3AA1B 5KAIO 3SYSA 2ZLDA 3DWNA 1QJPA
chains in the Genus database with same CATH topology
1IZNA 1ZHTA 2QTKA 1THQA 1MM5A 4GCSA 3T0SA 2ZFGA 3AAEB 4JCHA 4KR8A 4O3XB 4KR4A 4AUIA 4RLCA 1Q9FA 3VY9X 4GCPA 1HXUA 2F1VA 4B61A 5IYUA 5ADXK 1ORMA 3A2SX 2XTRA 3UU2A 3KVDD 2K0LA 4BUMX 5AFUK 3VZWX 2KZ7A 1HXTA 3AA1A 1ZHYA 2J4UP 2YPVA 3VE2A 4G75A 3AAAA 3T24A 3EMNX 2N2MA 1QJ9A 1ZHZA 3AAEA 4GCQA 3T20A 4PUXA 4FT6A 3PORA 4FZLA 3POXA 5JDPA 4AZLA 4GF4A 4LSEA 1ZHXA 2ODJA 2XTQA 3SY9A 2W81C 3AA0B 3UPGA 1OSMA 4FOZA 2Y7SA 2K4TA 4O49A 4AYMC 1QJ8A 4JFBA 5G26A 2O4VA 1BT9A 2J1NA 4RJXA 4KRAA 4E1SA 2Y0KA 4AYNA 1HXXA 5DL5A 3LK41 4FSPA 1BH3A 4D64A 1G90A 2XE3A 7PRNA 3K19A 3HW9A 3V8UA 3WI5A 3TZGA 4FUVA 3AA6B 2LFUA 3JTYA 3LK2B 3POQA 4FMSA 3DA3A 2XE1A 1P4TA 2KXPB 3AA7A 2ERVA 4U9CA 3VZUX 4AYEC 3QRCA 3AA0A 4D65A 4GHBA 4C69X 2MHLA 2XE5A 3QRAA 3HOEA 4O3ZA 3VY8X 2FGRA 4LSIA 1GFQA 3WI4A 4E1TA 2M06A 3G7GA 4FRTA 4FRXA 4O3YA 2M07A 3PRNA 4XNKA 1OPFA 2PRNA 3SZDA 3VE1A 2Y2XA 3PQSA 3O0EA 3RBHA 4QQ1A 4AFKA 4FZNA 3VZTX 5PRNA 4AYID 3LK3B 3AA6A 3LK2A 1Q9GA 2PORA 2XMXA 1BXWA 2XE2A 2KXPA 4O3WA 8PRNA 4LSHA 3UAQA 4FZMA 1ZHWA 3AA7B 3AAAB 2GE4A 3NSGA 4G76A 5T5FA 2MNHA 3C5OA 3SY7A 2W80C 2LHFA 2F1TA 3LK42 4AKRB 3GP6A 1GFNA 3LK3A 2Y0LA 3DA4A 4O4UA 5D5DA 4O4XA 1IZNB 4F4BA 5GV0A 4RLBA 3HWBA 5FVNA 6PRNA 4D5UA 4FSOA 2FGQX 2N2LA 1E54A 2OMFA 1H6S1 2Y0HA 1MPFA 3POUA 4N59A 4AKMA 4AYDC 2JMMA 3HOLA 2YNKA 4Z3TA 4RJWA 4N58A 1PRNA 2X27X 3PQUA 5ADXL 3SYBA 3FYXA 1GFMA 1PHOA 2XG6A 4RL9A 5EE2A 2KDYA 1MM4A 1YS5A 5DL6A 3SZVA 5AFUL 1GFOA 4AKRA 5DL8A 5DL7A 1GFPA 2KC0A 4FESA 4LSFA 4XNLA 2KZ7B 3AA1B 3SYSA 2ZLDA 1QJPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1THQ A;  1MM5 A;  2M06 A;  3G7G A;  3GP6 A;  2M07 A;  1QJ8 A;  4RLC A;  1Q9F A;  2N2L A;  2F1V A;  1ORM A;  2JMM A;  1Q9G A;  3QRA A;  1G90 A;  1BXW A;  2K0L A;  2X27 X;  1MM4 A;  1P4T A;  2N2M A;  2ERV A;  1QJ9 A;  2GE4 A;  3QRC A;  2MNH A;  3C5O A;  4PUX A;  2MHL A;  2LHF A;  2F1T A;  1QJP A; 
#chains in the Genus database with same CATH topology
 1IZN A;  1ZHT A;  2QTK A;  1THQ A;  1MM5 A;  4GCS A;  3T0S A;  2ZFG A;  3AAE B;  5H2F O;  2R4P A;  2AXT O;  3PGU A;  4C00 A;  4C4V B;  4JCH A;  4KR8 A;  4O3X B;  4CTD A;  4KR4 A;  4AUI A;  4RLC A;  3WU2 O;  1Q9F A;  3VY9 X;  4GCP A;  1HXU A;  2F1V A;  4UB6 O;  4B61 A;  5IYU A;  5ADX K;  1ORM A;  2WJQ A;  3A2S X;  2XTR A;  3UU2 A;  3KVD D;  1S5L O;  2K0L A;  4BUM X;  5AFU K;  3VZW X;  2JQY A;  2KZ7 A;  1HXT A;  3AA1 A;  1ZHY A;  2J4U P;  2YPV A;  5E79 O;  3VE2 A;  4G75 A;  3AAA A;  3T24 A;  3EMN X;  2N2M A;  1QJ9 A;  1ZHZ A;  3AAE A;  4GCQ A;  5TIS O;  4PUX A;  3T20 A;  4FT6 A;  3POR A;  4FZL A;  3POX A;  4C4V A;  5JDP A;  4AZL A;  4GF4 A;  4LSE A;  2R4N A;  1ZHX A;  2ODJ A;  2XTQ A;  3PGS A;  3SY9 A;  2W81 C;  3AA0 B;  3UPG A;  1OSM A;  3DWO X;  4K3C A;  4FOZ A;  2Y7S A;  2K4T A;  2R4L A;  4O49 A;  1QJ8 A;  4JFB A;  5G26 A;  3A0H O;  4AYM C;  2O4V A;  1BT9 A;  2J1N A;  2R88 A;  4RJX A;  4KRA A;  4E1S A;  2Y0K A;  5B66 O;  4AYN A;  4UB8 O;  4FQE A;  1HXX A;  5DL5 A;  3LK4 1;  2R89 A;  4FSP A;  1BH3 A;  4D64 A;  1G90 A;  2XE3 A;  7PRN A;  3K19 A;  3HW9 A;  2R4O A;  5GTI O;  3V8U A;  3WI5 A;  3TZG A;  4FUV A;  3AA6 B;  2LFU A;  3JTY A;  3LK2 B;  3POQ A;  4FMS A;  5G38 A;  5B5E O;  3DA3 A;  1P4T A;  2XE1 A;  2KXP B;  3AA7 A;  2ERV A;  4U9C A;  3VZU X;  4AYE C;  5GTH O;  3QRC A;  3AA0 A;  4D65 A;  3DZM A;  4GHB A;  4C69 X;  2MHL A;  2XE5 A;  3JCU O;  3QRA A;  3HOE A;  4N74 A;  4O3Z A;  4PJ0 O;  3VY8 X;  2FGR A;  4LSI A;  1GFQ A;  3WI4 A;  4E1T A;  2M06 A;  3G7G A;  4FRT A;  4FRX A;  4O3Y A;  2M07 A;  3PRN A;  4XNK A;  1OPF A;  2PRN A;  3PF1 A;  3SZD A;  3VE1 A;  1T1L A;  4PR7 A;  2Y2X A;  3PQS A;  3O0E A;  3RBH A;  4QQ1 A;  4AFK A;  4IL6 O;  4FZN A;  3VZT X;  2F1C X;  5PRN A;  4AYI D;  3LK3 B;  3AA6 A;  3LK2 A;  1Q9G A;  2POR A;  2XMX A;  1BXW A;  2XE2 A;  2KXP A;  4K3B A;  4O3W A;  5DL7 A;  8PRN A;  4LSH A;  3BRZ A;  3UAQ A;  4FZM A;  1ZHW A;  3AA7 B;  3AAA B;  2GE4 A;  3NSG A;  4G76 A;  5T5F A;  2MNH A;  3C5O A;  3SY7 A;  2W80 C;  2LHF A;  2F1T A;  2IWW A;  4N75 A;  3LK4 2;  5G3A A;  4AKR B;  3GP6 A;  3PGR A;  3NJT A;  1GFN A;  3LK3 A;  2Y0L A;  3DA4 A;  4O4U A;  5D5D A;  3A0B O;  2WJR A;  4O4X A;  1IZN B;  2IWV A;  4F4B A;  5GV0 A;  4RLB A;  3HWB A;  5FVN A;  6PRN A;  4D5U A;  4FSO A;  2OMF A;  2FGQ X;  1E54 A;  2N2L A;  1H6S 1;  2WVP A;  1MPF A;  2Y0H A;  3POU A;  4N59 A;  4AKM A;  4AYD C;  2JMM A;  3HOL A;  1T16 A;  2YNK A;  3KZI O;  4Z3T A;  5G39 A;  4RJW A;  4N58 A;  5KAF O;  1PRN A;  2X27 X;  3BS0 A;  3PQU A;  5ADX L;  3SYB A;  3FYX A;  1GFM A;  1PHO A;  2XG6 A;  4RL9 A;  5EE2 A;  2KDY A;  1MM4 A;  1YS5 A;  5DL6 A;  3SZV A;  5AFU L;  1GFO A;  4AKR A;  2X9K A;  5DL8 A;  1GFP A;  2KC0 A;  2R8A A;  4FES A;  4LSF A;  3BRY A;  4XNL A;  2KZ7 B;  3AA1 B;  5KAI O;  3SYS A;  2ZLD A;  3DWN A;  1QJP A; 
#chains in the Genus database with same CATH homology
 1IZN A;  1ZHT A;  2QTK A;  1THQ A;  1MM5 A;  4GCS A;  3T0S A;  2ZFG A;  3AAE B;  4JCH A;  4KR8 A;  4O3X B;  4KR4 A;  4AUI A;  4RLC A;  1Q9F A;  3VY9 X;  4GCP A;  1HXU A;  2F1V A;  4B61 A;  5IYU A;  5ADX K;  1ORM A;  3A2S X;  2XTR A;  3UU2 A;  3KVD D;  2K0L A;  4BUM X;  5AFU K;  3VZW X;  2KZ7 A;  1HXT A;  3AA1 A;  1ZHY A;  2J4U P;  2YPV A;  3VE2 A;  4G75 A;  3AAA A;  3T24 A;  3EMN X;  2N2M A;  1QJ9 A;  1ZHZ A;  3AAE A;  4GCQ A;  3T20 A;  4PUX A;  4FT6 A;  3POR A;  4FZL A;  3POX A;  5JDP A;  4AZL A;  4GF4 A;  4LSE A;  1ZHX A;  2ODJ A;  2XTQ A;  3SY9 A;  2W81 C;  3AA0 B;  3UPG A;  1OSM A;  4FOZ A;  2Y7S A;  2K4T A;  4O49 A;  4AYM C;  1QJ8 A;  4JFB A;  5G26 A;  2O4V A;  1BT9 A;  2J1N A;  4RJX A;  4KRA A;  4E1S A;  2Y0K A;  4AYN A;  1HXX A;  5DL5 A;  3LK4 1;  4FSP A;  1BH3 A;  4D64 A;  1G90 A;  2XE3 A;  7PRN A;  3K19 A;  3HW9 A;  3V8U A;  3WI5 A;  3TZG A;  4FUV A;  3AA6 B;  2LFU A;  3JTY A;  3LK2 B;  3POQ A;  4FMS A;  3DA3 A;  2XE1 A;  1P4T A;  2KXP B;  3AA7 A;  2ERV A;  4U9C A;  3VZU X;  4AYE C;  3QRC A;  3AA0 A;  4D65 A;  4GHB A;  4C69 X;  2MHL A;  2XE5 A;  3QRA A;  3HOE A;  4O3Z A;  3VY8 X;  2FGR A;  4LSI A;  1GFQ A;  3WI4 A;  4E1T A;  2M06 A;  3G7G A;  4FRT A;  4FRX A;  4O3Y A;  2M07 A;  3PRN A;  4XNK A;  1OPF A;  2PRN A;  3SZD A;  3VE1 A;  2Y2X A;  3PQS A;  3O0E A;  3RBH A;  4QQ1 A;  4AFK A;  4FZN A;  3VZT X;  5PRN A;  4AYI D;  3LK3 B;  3AA6 A;  3LK2 A;  1Q9G A;  2POR A;  2XMX A;  1BXW A;  2XE2 A;  2KXP A;  4O3W A;  8PRN A;  4LSH A;  3UAQ A;  4FZM A;  1ZHW A;  3AA7 B;  3AAA B;  2GE4 A;  3NSG A;  4G76 A;  5T5F A;  2MNH A;  3C5O A;  3SY7 A;  2W80 C;  2LHF A;  2F1T A;  3LK4 2;  4AKR B;  3GP6 A;  1GFN A;  3LK3 A;  2Y0L A;  3DA4 A;  4O4U A;  5D5D A;  4O4X A;  1IZN B;  4F4B A;  5GV0 A;  4RLB A;  3HWB A;  5FVN A;  6PRN A;  4D5U A;  4FSO A;  2FGQ X;  2N2L A;  1E54 A;  2OMF A;  1H6S 1;  2Y0H A;  1MPF A;  3POU A;  4N59 A;  4AKM A;  4AYD C;  2JMM A;  3HOL A;  2YNK A;  4Z3T A;  4RJW A;  4N58 A;  1PRN A;  2X27 X;  3PQU A;  5ADX L;  3SYB A;  3FYX A;  1GFM A;  1PHO A;  2XG6 A;  4RL9 A;  5EE2 A;  2KDY A;  1MM4 A;  1YS5 A;  5DL6 A;  3SZV A;  5AFU L;  1GFO A;  4AKR A;  5DL8 A;  5DL7 A;  1GFP A;  2KC0 A;  4FES A;  4LSF A;  4XNL A;  2KZ7 B;  3AA1 B;  3SYS A;  2ZLD A;  1QJP A; 
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