1P4TA

Crystal structure of neisserial surface protein a (nspa)
Total Genus 40
204060801001201400510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
155
structure length
155
Chain Sequence
EGASGFYVQADAAHAKASSSLGSAKGFSPRISAGYRINDLRFAVDYTRYKNYKAPSTDFKLYSIGASAIYDFDTQSPVKPYLGARLSLNRASVDLGGSDSFSQTSIGLGVLTGVSYAVTPNVDLDAGYRYNYIGKVNTVKNVRSGELSAGVRVKF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (4-19)S4 (40-51)S9 (122-134)EMPTYTVIII1 (51-54)TI1 (19-22)S2 (22-27)S3 (30-37)TIV1 (36-39)S5 (59-71)S6 (78-95)TVIII2 (55-58)S7 (98-101)S8 (105-119)TIV2 (94-97)TIV4 (135-138)S10 (142-153)TI2 (119-122)TIV5 (136-139)Updating...
connected with : NaN
molecule tags Membrane protein
source organism Neisseria meningitidis
publication title Crystal structure of Neisserial Surface Protein A (NspA), a conserved outer membrane protein with vaccine potential
pubmed doi rcsb
molecule keywords outer membrane protein NspA
total genus 40
structure length 155
sequence length 155
ec nomenclature
pdb deposition date 2003-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02462 Opacity Opacity family porin protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 1p4tA00
1ORMA 3QRAA 2ERVA 1MM5A 1THQA 2N2LA 1MM4A 3C5OA 2F1VA 3G7GA 2N2MA 1Q9FA 1G90A 3QRCA 1BXWA 2M07A 2LHFA 2X27X 1QJ8A 4RLCA 2JMMA 1QJ9A 2K0LA 4PUXA 2GE4A 3GP6A 1Q9GA 1P4TA 2M06A 2MHLA 2MNHA 1QJPA 2F1TA
chains in the Genus database with same CATH superfamily
2KDYA 4D64A 1IZNB 4C4VA 3VY9X 1MPFA 3K19A 4RL9A 2Y2XA 3PGRA 4FESA 1MM4A 4RJWA 2Y7SA 4AYEC 3SYSA 4FZLA 3V8UA 3PF1A 3EMNX 3PQSA 1G90A 1ZHYA 3POUA 2OMFA 1PRNA 2R4LA 2ZLDA 4O3WA 5GTHO 4N74A 2WJQA 4GF4A 3WU2O 3AAAA 3DA4A 2X9KA 4G76A 5KAIO 4AKRB 1GFPA 3DA3A 5AFUL 3AA1A 7PRNA 6PRNA 3VE2A 5T5FA 3AA6B 2XMXA 3PORA 4K3BA 3AA0A 2ZFGA 4FSOA 5TISO 3HOEA 3VY8X 4PJ0O 5ADXK 2Y0HA 1E54A 1BH3A 3VZWX 4FQEA 1P4TA 2W81C 5DL6A 5G38A 4C00A 3AAEA 2XE2A 4PR7A 4FMSA 4LSHA 2R4PA 3LK2B 2JQYA 3QRAA 1IZNA 1MM5A 2IWVA 1OPFA 2N2LA 5PRNA 4KR4A 3KVDD 5DL5A 1GFNA 1T1LA 2QTKA 4N58A 3A0BO 4KRAA 4XNLA 4D5UA 3T20A 4AKMA 4FZNA 3VE1A 4C69X 2KZ7B 5DL7A 3PGSA 4AFKA 1BXWA 2J4UP 1T16A 1YS5A 2KC0A 5G3AA 4N59A 4AYDC 4CTDA 2M07A 3SYBA 4AYMC 4D65A 4U9CA 2LHFA 3T24A 5AFUK 4JCHA 2X27X 2Y0KA 1S5LO 2LFUA 2XE3A 2ODJA 4IL6O 2XTRA 1QJ8A 4N75A 3DWNA 3AA6A 4O4XA 3WI5A 3AA7B 4E1SA 2K0LA 4RLBA 2GE4A 1HXUA 3GP6A 5EE2A 1Q9GA 3POXA 1ZHXA 2M06A 2MHLA 2R4NA 3DWOX 1BT9A 2MNHA 3NSGA 5H2FO 1QJPA 3TZGA 4AYNA 5DL8A 3T0SA 4AYID 1ORMA 1GFMA 2R4OA 3VZUX 5GV0A 5FVNA 4G75A 5GTIO 2ERVA 2WVPA 3HWBA 4FUVA 1THQA 2FGRA 4XNKA 2PRNA 3VZTX 4F4BA 4GCPA 1GFOA 1PHOA 2WJRA 3LK42 4UB8O 2F1VA 1ZHZA 3G7GA 1Q9FA 3BS0A 3UPGA 5IYUA 4FSPA 2KXPB 3QRCA 5E79O 2F1CX 4LSFA 3PGUA 4LSEA 4O3XB 2YNKA 3SZVA 3KZIO 2YPVA 2R8AA 1ZHTA 3LK3B 4AKRA 5G26A 2XTQA 2O4VA 3BRYA 3LK41 4RLCA 5B66O 4LSIA 1QJ9A 3A0HO 1OSMA 4O49A 4AUIA 2XE5A 4PUXA 3AAEB 5B5EO 3AA7A 3NJTA 3SY7A 4B61A 1ZHWA 2IWWA 4RJXA 2J1NA 1HXXA 2R88A 4FT6A 3UU2A 4AZLA 4E1TA 4C4VB 2W80C 4JFBA 8PRNA 5D5DA 4Z3TA 3WI4A 4UB6O 3BRZA 5G39A 3LK2A 3SZDA 3C5OA 1GFQA 4FRXA 4O4UA 3JTYA 5JDPA 2N2MA 4O3YA 3HW9A 2XE1A 3POQA 3AAAB 1H6S1 3PRNA 4GCQA 4GHBA 4K3CA 4FZMA 3AA1B 4QQ1A 3HOLA 4FRTA 3A2SX 2KXPA 2K4TA 3FYXA 2KZ7A 3PQUA 2AXTO 2Y0LA 1HXTA 4GCSA 3JCUO 4O3ZA 5KAFO 3RBHA 3AA0B 3O0EA 4FOZA 3LK3A 5ADXL 2JMMA 3UAQA 2R89A 4BUMX 2FGQX 4KR8A 3SY9A 3DZMA 2PORA 2XG6A 2F1TA
chains in the Genus database with same CATH topology
2KDYA 4D64A 1IZNB 3VY9X 1MPFA 3K19A 4RL9A 2Y2XA 4FESA 4RJWA 1MM4A 2Y7SA 4AYEC 3SYSA 4FZLA 3V8UA 3PQSA 3EMNX 1G90A 1ZHYA 3POUA 2OMFA 1PRNA 2ZLDA 4O3WA 4GF4A 3AAAA 3DA4A 4G76A 5AFUL 4AKRB 1GFPA 3DA3A 7PRNA 3AA1A 6PRNA 3VE2A 5T5FA 3AA6B 2XMXA 3PORA 3AA0A 2ZFGA 4FSOA 3HOEA 3VY8X 5ADXK 2Y0HA 1E54A 1BH3A 3VZWX 1P4TA 2W81C 5DL6A 3AAEA 2XE2A 4FMSA 4LSHA 3LK2B 3QRAA 1IZNA 1MM5A 1OPFA 2N2LA 5PRNA 4KR4A 3KVDD 5DL5A 1GFNA 2QTKA 4N58A 4KRAA 4D5UA 4XNLA 3T20A 4AKMA 4FZNA 3VE1A 4C69X 2KZ7B 5DL7A 4AFKA 2J4UP 1BXWA 3UPGA 1YS5A 2KC0A 4AYDC 4N59A 4D65A 2M07A 3SYBA 4AYMC 4U9CA 2LHFA 3T24A 5AFUK 4JCHA 2X27X 2Y0KA 2XE3A 2LFUA 2ODJA 2XTRA 1QJ8A 3AA6A 4O4XA 3WI5A 3AA7B 4E1SA 2K0LA 4RLBA 2GE4A 1HXUA 3GP6A 5EE2A 1Q9GA 3POXA 1ZHXA 2M06A 2MHLA 3NSGA 5IYUA 1BT9A 2MNHA 1QJPA 3TZGA 4AYNA 5DL8A 3T0SA 4AYID 1ORMA 1GFMA 3VZUX 5GV0A 5FVNA 4G75A 2ERVA 3HWBA 4FUVA 1THQA 2FGRA 4XNKA 2PRNA 3VZTX 4F4BA 4GCPA 1GFOA 1PHOA 3LK42 2F1VA 1ZHZA 3G7GA 1Q9FA 4FSPA 2KXPB 3QRCA 4LSFA 4LSEA 4O3XB 2YNKA 3SZVA 2YPVA 3LK3B 1ZHTA 4AKRA 5G26A 2XTQA 2O4VA 3LK41 4RLCA 4LSIA 1QJ9A 4O49A 1OSMA 4AUIA 2XE5A 4PUXA 3AAEB 3AA7A 3SY7A 4B61A 1ZHWA 4RJXA 2J1NA 1HXXA 4FT6A 3UU2A 4AZLA 4E1TA 2W80C 4JFBA 8PRNA 5D5DA 4Z3TA 3WI4A 3LK2A 3SZDA 3C5OA 1GFQA 4FRXA 4O4UA 3JTYA 5JDPA 2N2MA 4O3YA 3HW9A 2XE1A 3POQA 3AAAB 1H6S1 3PRNA 4GCQA 4GHBA 4FZMA 3AA1B 4QQ1A 3HOLA 4FRTA 3A2SX 2KXPA 2K4TA 3FYXA 2KZ7A 3PQUA 2Y0LA 4GCSA 1HXTA 4O3ZA 3RBHA 3AA0B 3O0EA 4FOZA 3LK3A 5ADXL 2JMMA 3UAQA 4BUMX 2FGQX 4KR8A 3SY9A 2PORA 2XG6A 2F1TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ORM A;  3QRA A;  2ERV A;  1MM5 A;  1THQ A;  2N2L A;  1MM4 A;  3C5O A;  2F1V A;  3G7G A;  2N2M A;  1Q9F A;  1G90 A;  3QRC A;  1BXW A;  2M07 A;  2LHF A;  2X27 X;  1QJ8 A;  4RLC A;  2JMM A;  1QJ9 A;  2K0L A;  4PUX A;  2GE4 A;  3GP6 A;  1Q9G A;  1P4T A;  2M06 A;  2MHL A;  2MNH A;  1QJP A;  2F1T A; 
#chains in the Genus database with same CATH topology
 2KDY A;  4D64 A;  1IZN B;  4C4V A;  3VY9 X;  1MPF A;  3K19 A;  4RL9 A;  2Y2X A;  3PGR A;  4FES A;  1MM4 A;  4RJW A;  2Y7S A;  4AYE C;  3SYS A;  4FZL A;  3V8U A;  3PF1 A;  3EMN X;  3PQS A;  1G90 A;  1ZHY A;  3POU A;  2OMF A;  1PRN A;  2R4L A;  2ZLD A;  4O3W A;  5GTH O;  4N74 A;  2WJQ A;  4GF4 A;  3WU2 O;  3AAA A;  3DA4 A;  2X9K A;  4G76 A;  5KAI O;  4AKR B;  1GFP A;  3DA3 A;  5AFU L;  3AA1 A;  7PRN A;  6PRN A;  3VE2 A;  5T5F A;  3AA6 B;  2XMX A;  3POR A;  4K3B A;  3AA0 A;  2ZFG A;  4FSO A;  5TIS O;  3HOE A;  3VY8 X;  4PJ0 O;  5ADX K;  2Y0H A;  1E54 A;  1BH3 A;  3VZW X;  4FQE A;  1P4T A;  2W81 C;  5DL6 A;  5G38 A;  4C00 A;  3AAE A;  2XE2 A;  4PR7 A;  4FMS A;  4LSH A;  2R4P A;  3LK2 B;  2JQY A;  3QRA A;  1IZN A;  1MM5 A;  2IWV A;  1OPF A;  2N2L A;  5PRN A;  4KR4 A;  3KVD D;  5DL5 A;  1GFN A;  1T1L A;  2QTK A;  4N58 A;  3A0B O;  4KRA A;  4XNL A;  4D5U A;  3T20 A;  4AKM A;  4FZN A;  3VE1 A;  4C69 X;  2KZ7 B;  5DL7 A;  3PGS A;  4AFK A;  1BXW A;  2J4U P;  1T16 A;  1YS5 A;  2KC0 A;  5G3A A;  4N59 A;  4AYD C;  4CTD A;  2M07 A;  3SYB A;  4AYM C;  4D65 A;  4U9C A;  2LHF A;  3T24 A;  5AFU K;  4JCH A;  2X27 X;  2Y0K A;  1S5L O;  2LFU A;  2XE3 A;  2ODJ A;  4IL6 O;  2XTR A;  1QJ8 A;  4N75 A;  3DWN A;  3AA6 A;  4O4X A;  3WI5 A;  3AA7 B;  4E1S A;  2K0L A;  4RLB A;  2GE4 A;  1HXU A;  3GP6 A;  5EE2 A;  1Q9G A;  3POX A;  1ZHX A;  2M06 A;  2MHL A;  2R4N A;  3DWO X;  1BT9 A;  2MNH A;  3NSG A;  5H2F O;  1QJP A;  3TZG A;  4AYN A;  5DL8 A;  3T0S A;  4AYI D;  1ORM A;  1GFM A;  2R4O A;  3VZU X;  5GV0 A;  5FVN A;  4G75 A;  5GTI O;  2ERV A;  2WVP A;  3HWB A;  4FUV A;  1THQ A;  2FGR A;  4XNK A;  2PRN A;  3VZT X;  4F4B A;  4GCP A;  1GFO A;  1PHO A;  2WJR A;  3LK4 2;  4UB8 O;  2F1V A;  1ZHZ A;  3G7G A;  1Q9F A;  3BS0 A;  3UPG A;  5IYU A;  4FSP A;  2KXP B;  3QRC A;  5E79 O;  2F1C X;  4LSF A;  3PGU A;  4LSE A;  4O3X B;  2YNK A;  3SZV A;  3KZI O;  2YPV A;  2R8A A;  1ZHT A;  3LK3 B;  4AKR A;  5G26 A;  2XTQ A;  2O4V A;  3BRY A;  3LK4 1;  4RLC A;  5B66 O;  4LSI A;  1QJ9 A;  3A0H O;  1OSM A;  4O49 A;  4AUI A;  2XE5 A;  4PUX A;  3AAE B;  5B5E O;  3AA7 A;  3NJT A;  3SY7 A;  4B61 A;  1ZHW A;  2IWW A;  4RJX A;  2J1N A;  1HXX A;  2R88 A;  4FT6 A;  3UU2 A;  4AZL A;  4E1T A;  4C4V B;  2W80 C;  4JFB A;  8PRN A;  5D5D A;  4Z3T A;  3WI4 A;  4UB6 O;  3BRZ A;  5G39 A;  3LK2 A;  3SZD A;  3C5O A;  1GFQ A;  4FRX A;  4O4U A;  3JTY A;  5JDP A;  2N2M A;  4O3Y A;  3HW9 A;  2XE1 A;  3POQ A;  3AAA B;  1H6S 1;  3PRN A;  4GCQ A;  4GHB A;  4K3C A;  4FZM A;  3AA1 B;  4QQ1 A;  3HOL A;  4FRT A;  3A2S X;  2KXP A;  2K4T A;  3FYX A;  2KZ7 A;  3PQU A;  2AXT O;  2Y0L A;  1HXT A;  4GCS A;  3JCU O;  4O3Z A;  5KAF O;  3RBH A;  3AA0 B;  3O0E A;  4FOZ A;  3LK3 A;  5ADX L;  2JMM A;  3UAQ A;  2R89 A;  4BUM X;  2FGQ X;  4KR8 A;  3SY9 A;  3DZM A;  2POR A;  2XG6 A;  2F1T A; 
#chains in the Genus database with same CATH homology
 2KDY A;  4D64 A;  1IZN B;  3VY9 X;  1MPF A;  3K19 A;  4RL9 A;  2Y2X A;  4FES A;  4RJW A;  1MM4 A;  2Y7S A;  4AYE C;  3SYS A;  4FZL A;  3V8U A;  3PQS A;  3EMN X;  1G90 A;  1ZHY A;  3POU A;  2OMF A;  1PRN A;  2ZLD A;  4O3W A;  4GF4 A;  3AAA A;  3DA4 A;  4G76 A;  5AFU L;  4AKR B;  1GFP A;  3DA3 A;  7PRN A;  3AA1 A;  6PRN A;  3VE2 A;  5T5F A;  3AA6 B;  2XMX A;  3POR A;  3AA0 A;  2ZFG A;  4FSO A;  3HOE A;  3VY8 X;  5ADX K;  2Y0H A;  1E54 A;  1BH3 A;  3VZW X;  1P4T A;  2W81 C;  5DL6 A;  3AAE A;  2XE2 A;  4FMS A;  4LSH A;  3LK2 B;  3QRA A;  1IZN A;  1MM5 A;  1OPF A;  2N2L A;  5PRN A;  4KR4 A;  3KVD D;  5DL5 A;  1GFN A;  2QTK A;  4N58 A;  4KRA A;  4D5U A;  4XNL A;  3T20 A;  4AKM A;  4FZN A;  3VE1 A;  4C69 X;  2KZ7 B;  5DL7 A;  4AFK A;  2J4U P;  1BXW A;  3UPG A;  1YS5 A;  2KC0 A;  4AYD C;  4N59 A;  4D65 A;  2M07 A;  3SYB A;  4AYM C;  4U9C A;  2LHF A;  3T24 A;  5AFU K;  4JCH A;  2X27 X;  2Y0K A;  2XE3 A;  2LFU A;  2ODJ A;  2XTR A;  1QJ8 A;  3AA6 A;  4O4X A;  3WI5 A;  3AA7 B;  4E1S A;  2K0L A;  4RLB A;  2GE4 A;  1HXU A;  3GP6 A;  5EE2 A;  1Q9G A;  3POX A;  1ZHX A;  2M06 A;  2MHL A;  3NSG A;  5IYU A;  1BT9 A;  2MNH A;  1QJP A;  3TZG A;  4AYN A;  5DL8 A;  3T0S A;  4AYI D;  1ORM A;  1GFM A;  3VZU X;  5GV0 A;  5FVN A;  4G75 A;  2ERV A;  3HWB A;  4FUV A;  1THQ A;  2FGR A;  4XNK A;  2PRN A;  3VZT X;  4F4B A;  4GCP A;  1GFO A;  1PHO A;  3LK4 2;  2F1V A;  1ZHZ A;  3G7G A;  1Q9F A;  4FSP A;  2KXP B;  3QRC A;  4LSF A;  4LSE A;  4O3X B;  2YNK A;  3SZV A;  2YPV A;  3LK3 B;  1ZHT A;  4AKR A;  5G26 A;  2XTQ A;  2O4V A;  3LK4 1;  4RLC A;  4LSI A;  1QJ9 A;  4O49 A;  1OSM A;  4AUI A;  2XE5 A;  4PUX A;  3AAE B;  3AA7 A;  3SY7 A;  4B61 A;  1ZHW A;  4RJX A;  2J1N A;  1HXX A;  4FT6 A;  3UU2 A;  4AZL A;  4E1T A;  2W80 C;  4JFB A;  8PRN A;  5D5D A;  4Z3T A;  3WI4 A;  3LK2 A;  3SZD A;  3C5O A;  1GFQ A;  4FRX A;  4O4U A;  3JTY A;  5JDP A;  2N2M A;  4O3Y A;  3HW9 A;  2XE1 A;  3POQ A;  3AAA B;  1H6S 1;  3PRN A;  4GCQ A;  4GHB A;  4FZM A;  3AA1 B;  4QQ1 A;  3HOL A;  4FRT A;  3A2S X;  2KXP A;  2K4T A;  3FYX A;  2KZ7 A;  3PQU A;  2Y0L A;  4GCS A;  1HXT A;  4O3Z A;  3RBH A;  3AA0 B;  3O0E A;  4FOZ A;  3LK3 A;  5ADX L;  2JMM A;  3UAQ A;  4BUM X;  2FGQ X;  4KR8 A;  3SY9 A;  2POR A;  2XG6 A;  2F1T A; 
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