1QJ9A

Crystal structure of the outer membrane protein ompx from escherichia coli
Total Genus 39
204060801001201400510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
148
structure length
148
Chain Sequence
ATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-14)S3 (35-50)TIV1 (14-17)S2 (20-32)S6 (98-118)S4 (57-74)S7 (121-130)TVIa1 (94-97)TI1 (74-77)S5 (77-94)TIV5 (131-134)S8 (137-147)TI2 (118-121)TII'1 (132-135)Updating...
connected with : NaN
molecule tags Integral membrane protein
source organism Escherichia coli
publication title The structure of the outer membrane protein OmpX from Escherichia coli reveals possible mechanisms of virulence.
pubmed rcsb
molecule keywords OUTER MEMBRANE PROTEIN X
total genus 39
structure length 148
sequence length 148
ec nomenclature
pdb deposition date 1999-06-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 1qj9A00
2MHLA 2MNHA 3QRCA 3QRAA 2F1VA 2N2LA 4PUXA 1THQA 1ORMA 2M07A 1BXWA 2JMMA 1QJ9A 2X27X 1Q9FA 2K0LA 2LHFA 3GP6A 2N2MA 3C5OA 1QJPA 1MM4A 2ERVA 2GE4A 1P4TA 4RLCA 2M06A 1QJ8A 2F1TA 1Q9GA 1G90A 1MM5A 3G7GA
chains in the Genus database with same CATH superfamily
3AA7A 3V8UA 2MNHA 1PHOA 1ZHYA 4AFKA 3POXA 3WI4A 4AKMA 4F4BA 2F1VA 4PJ0O 4O4XA 3JCUO 3PF1A 4RJWA 3T24A 1T16A 4D5UA 4O3XB 2KDYA 6PRNA 4AKRA 1IZNA 1GFNA 5DL8A 2XTRA 2F1CX 4JFBA 4UB6O 4FMSA 3AA1B 2R88A 1QJPA 4XNLA 5IYUA 3DWOX 5JDPA 5AFUK 2KXPB 1HXXA 4N58A 2XE5A 4QQ1A 2F1TA 4K3CA 1GFQA 3K19A 1Q9GA 4FUVA 1G90A 3G7GA 4LSIA 2YNKA 3POUA 4FRTA 1BT9A 2MHLA 4B61A 5D5DA 2KXPA 1OSMA 4FZLA 5G3AA 3BRYA 4PR7A 2N2LA 2XE3A 4PUXA 3RBHA 3VE1A 2J4UP 4RL9A 2JQYA 1HXTA 5GTIO 3AA0B 5T5FA 3HOEA 2M07A 4LSFA 4UB8O 3VE2A 3UU2A 4FT6A 4JCHA 1ZHXA 4RLBA 3DA3A 2Y7SA 3JTYA 4GF4A 4GCPA 4O49A 4N59A 3EMNX 3NJTA 4O4UA 2X27X 4O3WA 5EE2A 3SY7A 5AFUL 2ODJA 2QTKA 2R4LA 2XE2A 2FGQX 2N2MA 3AA6B 3KZIO 4FZMA 4AYDC 1YS5A 2W81C 3HOLA 4AYNA 5B5EO 1MM4A 2ERVA 2O4VA 3AA0A 2KZ7B 3HW9A 3VZWX 4FOZA 4KR4A 4C00A 3PORA 1P4TA 4E1TA 3FYXA 4C69X 2IWWA 2LFUA 1PRNA 3A0BO 1MM5A 3T20A 4BUMX 3PGRA 3AA6A 3SZVA 4U9CA 3TZGA 2AXTO 4FSOA 4GCSA 5G38A 3AA1A 3LK3B 3QRAA 5TISO 4AYID 3BRZA 2KZ7A 2XE1A 4FSPA 1OPFA 3UPGA 4LSHA 5KAFO 1ZHZA 1THQA 3KVDD 3SZDA 4D64A 1T1LA 5FVNA 4FZNA 2R4PA 2IWVA 1BXWA 2X9KA 2JMMA 2Y2XA 5GV0A 2WJQA 2W80C 4AUIA 1GFOA 8PRNA 3A2SX 3AAAB 4O3YA 1Q9FA 3LK3A 2K0LA 2LHFA 3AA7B 2YPVA 3AAEB 1GFPA 1H6S1 1ZHTA 3HWBA 3PGUA 4KR8A 4N74A 4N75A 3VY8X 4Z3TA 1GFMA 3LK2B 4KRAA 3LK42 4C4VB 7PRNA 5GTHO 3O0EA 3PQSA 4G76A 4GCQA 5PRNA 3UAQA 2GE4A 5G39A 2K4TA 2WJRA 4RLCA 4CTDA 3WU2O 2M06A 3BS0A 4AYMC 4K3BA 3WI5A 3NSGA 2Y0LA 3LK41 4AKRB 3AAAA 3AAEA 4RJXA 3DWNA 1ZHWA 1HXUA 2PORA 4FQEA 3PGSA 2XMXA 1MPFA 2FGRA 3LK2A 3PQUA 3QRCA 3DA4A 4C4VA 5ADXK 2Y0HA 4D65A 3A0HO 3POQA 5KAIO 5E79O 4GHBA 4E1SA 4FESA 5DL6A 2R4OA 1ORMA 2XG6A 4G75A 2OMFA 4XNKA 1BH3A 4IL6O 3PRNA 1QJ9A 2KC0A 5G26A 2R89A 2R8AA 2Y0KA 2ZLDA 2R4NA 3SY9A 1E54A 3VZUX 5DL7A 3VZTX 3DZMA 4AZLA 3GP6A 2XTQA 4AYEC 4FRXA 3C5OA 3SYBA 5B66O 2J1NA 2ZFGA 3SYSA 5H2FO 4O3ZA 1QJ8A 2PRNA 3VY9X 5ADXL 1IZNB 5DL5A 4LSEA 1S5LO 2WVPA 3T0SA
chains in the Genus database with same CATH topology
3AA7A 3V8UA 2MNHA 1PHOA 1ZHYA 4AFKA 3POXA 3WI4A 4AKMA 4F4BA 2F1VA 4O4XA 4RJWA 3T24A 4D5UA 4O3XB 2KDYA 6PRNA 4AKRA 1IZNA 1GFNA 5DL8A 2XTRA 4JFBA 4FMSA 3AA1B 5IYUA 1QJPA 4XNLA 5JDPA 5AFUK 2KXPB 1HXXA 4N58A 2XE5A 4QQ1A 2F1TA 1GFQA 3K19A 1Q9GA 4FUVA 1G90A 3G7GA 4LSIA 2YNKA 3POUA 4FRTA 1BT9A 2MHLA 4B61A 5D5DA 2KXPA 1OSMA 4FZLA 2N2LA 2XE3A 4PUXA 3RBHA 3VE1A 2J4UP 4RL9A 1HXTA 5T5FA 3AA0B 3HOEA 2M07A 4LSFA 3VE2A 3UU2A 4FT6A 4JCHA 1ZHXA 4RLBA 3DA3A 2Y7SA 3JTYA 4GF4A 4GCPA 4O49A 4N59A 3EMNX 4O3WA 4O4UA 2X27X 5EE2A 3SY7A 5AFUL 2ODJA 2QTKA 2XE2A 3AA6B 2FGQX 2N2MA 4FZMA 4AYNA 4AYDC 1YS5A 2W81C 3HOLA 1MM4A 2ERVA 2O4VA 3AA0A 2KZ7B 3HW9A 3VZWX 4FOZA 4KR4A 3PORA 1P4TA 4E1TA 3FYXA 4C69X 2LFUA 1PRNA 1MM5A 3T20A 4BUMX 3AA6A 3SZVA 4U9CA 3TZGA 4FSOA 4GCSA 3AA1A 3LK3B 3QRAA 4AYID 2KZ7A 2XE1A 4FSPA 1OPFA 3UPGA 4LSHA 1ZHZA 1THQA 3KVDD 3SZDA 4D64A 5FVNA 4FZNA 1BXWA 2Y2XA 2JMMA 2W80C 4AUIA 1GFOA 8PRNA 3A2SX 3AAAB 4O3YA 1Q9FA 3LK3A 2K0LA 2LHFA 3AA7B 2YPVA 3AAEB 1GFPA 1H6S1 1ZHTA 3HWBA 4KR8A 3VY8X 4Z3TA 1GFMA 3LK2B 4KRAA 3LK42 7PRNA 5GV0A 3O0EA 3PQSA 4G76A 4GCQA 5PRNA 3UAQA 2GE4A 2K4TA 4RLCA 2M06A 4AYMC 3WI5A 3NSGA 2Y0LA 3LK41 4AKRB 3AAAA 3AAEA 4RJXA 1ZHWA 1HXUA 2PORA 2XMXA 1MPFA 2FGRA 3LK2A 3PQUA 3QRCA 3DA4A 5ADXK 2Y0HA 4D65A 3POQA 4GHBA 4E1SA 4FESA 5DL6A 1ORMA 2XG6A 4G75A 2OMFA 4XNKA 1BH3A 3PRNA 1QJ9A 2KC0A 5G26A 2Y0KA 2ZLDA 3VZUX 3SY9A 1E54A 5DL7A 3VZTX 4AZLA 3GP6A 2XTQA 4AYEC 4FRXA 3C5OA 3SYBA 2J1NA 2ZFGA 3SYSA 4O3ZA 1QJ8A 2PRNA 3VY9X 5ADXL 1IZNB 5DL5A 4LSEA 3T0SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MHL A;  2MNH A;  3QRC A;  3QRA A;  2F1V A;  2N2L A;  4PUX A;  1THQ A;  1ORM A;  2M07 A;  1BXW A;  2JMM A;  1QJ9 A;  2X27 X;  1Q9F A;  2K0L A;  2LHF A;  3GP6 A;  2N2M A;  3C5O A;  1QJP A;  1MM4 A;  2ERV A;  2GE4 A;  1P4T A;  4RLC A;  2M06 A;  1QJ8 A;  2F1T A;  1Q9G A;  1G90 A;  1MM5 A;  3G7G A; 
#chains in the Genus database with same CATH topology
 3AA7 A;  3V8U A;  2MNH A;  1PHO A;  1ZHY A;  4AFK A;  3POX A;  3WI4 A;  4AKM A;  4F4B A;  2F1V A;  4PJ0 O;  4O4X A;  3JCU O;  3PF1 A;  4RJW A;  3T24 A;  1T16 A;  4D5U A;  4O3X B;  2KDY A;  6PRN A;  4AKR A;  1IZN A;  1GFN A;  5DL8 A;  2XTR A;  2F1C X;  4JFB A;  4UB6 O;  4FMS A;  3AA1 B;  2R88 A;  1QJP A;  4XNL A;  5IYU A;  3DWO X;  5JDP A;  5AFU K;  2KXP B;  1HXX A;  4N58 A;  2XE5 A;  4QQ1 A;  2F1T A;  4K3C A;  1GFQ A;  3K19 A;  1Q9G A;  4FUV A;  1G90 A;  3G7G A;  4LSI A;  2YNK A;  3POU A;  4FRT A;  1BT9 A;  2MHL A;  4B61 A;  5D5D A;  2KXP A;  1OSM A;  4FZL A;  5G3A A;  3BRY A;  4PR7 A;  2N2L A;  2XE3 A;  4PUX A;  3RBH A;  3VE1 A;  2J4U P;  4RL9 A;  2JQY A;  1HXT A;  5GTI O;  3AA0 B;  5T5F A;  3HOE A;  2M07 A;  4LSF A;  4UB8 O;  3VE2 A;  3UU2 A;  4FT6 A;  4JCH A;  1ZHX A;  4RLB A;  3DA3 A;  2Y7S A;  3JTY A;  4GF4 A;  4GCP A;  4O49 A;  4N59 A;  3EMN X;  3NJT A;  4O4U A;  2X27 X;  4O3W A;  5EE2 A;  3SY7 A;  5AFU L;  2ODJ A;  2QTK A;  2R4L A;  2XE2 A;  2FGQ X;  2N2M A;  3AA6 B;  3KZI O;  4FZM A;  4AYD C;  1YS5 A;  2W81 C;  3HOL A;  4AYN A;  5B5E O;  1MM4 A;  2ERV A;  2O4V A;  3AA0 A;  2KZ7 B;  3HW9 A;  3VZW X;  4FOZ A;  4KR4 A;  4C00 A;  3POR A;  1P4T A;  4E1T A;  3FYX A;  4C69 X;  2IWW A;  2LFU A;  1PRN A;  3A0B O;  1MM5 A;  3T20 A;  4BUM X;  3PGR A;  3AA6 A;  3SZV A;  4U9C A;  3TZG A;  2AXT O;  4FSO A;  4GCS A;  5G38 A;  3AA1 A;  3LK3 B;  3QRA A;  5TIS O;  4AYI D;  3BRZ A;  2KZ7 A;  2XE1 A;  4FSP A;  1OPF A;  3UPG A;  4LSH A;  5KAF O;  1ZHZ A;  1THQ A;  3KVD D;  3SZD A;  4D64 A;  1T1L A;  5FVN A;  4FZN A;  2R4P A;  2IWV A;  1BXW A;  2X9K A;  2JMM A;  2Y2X A;  5GV0 A;  2WJQ A;  2W80 C;  4AUI A;  1GFO A;  8PRN A;  3A2S X;  3AAA B;  4O3Y A;  1Q9F A;  3LK3 A;  2K0L A;  2LHF A;  3AA7 B;  2YPV A;  3AAE B;  1GFP A;  1H6S 1;  1ZHT A;  3HWB A;  3PGU A;  4KR8 A;  4N74 A;  4N75 A;  3VY8 X;  4Z3T A;  1GFM A;  3LK2 B;  4KRA A;  3LK4 2;  4C4V B;  7PRN A;  5GTH O;  3O0E A;  3PQS A;  4G76 A;  4GCQ A;  5PRN A;  3UAQ A;  2GE4 A;  5G39 A;  2K4T A;  2WJR A;  4RLC A;  4CTD A;  3WU2 O;  2M06 A;  3BS0 A;  4AYM C;  4K3B A;  3WI5 A;  3NSG A;  2Y0L A;  3LK4 1;  4AKR B;  3AAA A;  3AAE A;  4RJX A;  3DWN A;  1ZHW A;  1HXU A;  2POR A;  4FQE A;  3PGS A;  2XMX A;  1MPF A;  2FGR A;  3LK2 A;  3PQU A;  3QRC A;  3DA4 A;  4C4V A;  5ADX K;  2Y0H A;  4D65 A;  3A0H O;  3POQ A;  5KAI O;  5E79 O;  4GHB A;  4E1S A;  4FES A;  5DL6 A;  2R4O A;  1ORM A;  2XG6 A;  4G75 A;  2OMF A;  4XNK A;  1BH3 A;  4IL6 O;  3PRN A;  1QJ9 A;  2KC0 A;  5G26 A;  2R89 A;  2R8A A;  2Y0K A;  2ZLD A;  2R4N A;  3SY9 A;  1E54 A;  3VZU X;  5DL7 A;  3VZT X;  3DZM A;  4AZL A;  3GP6 A;  2XTQ A;  4AYE C;  4FRX A;  3C5O A;  3SYB A;  5B66 O;  2J1N A;  2ZFG A;  3SYS A;  5H2F O;  4O3Z A;  1QJ8 A;  2PRN A;  3VY9 X;  5ADX L;  1IZN B;  5DL5 A;  4LSE A;  1S5L O;  2WVP A;  3T0S A; 
#chains in the Genus database with same CATH homology
 3AA7 A;  3V8U A;  2MNH A;  1PHO A;  1ZHY A;  4AFK A;  3POX A;  3WI4 A;  4AKM A;  4F4B A;  2F1V A;  4O4X A;  4RJW A;  3T24 A;  4D5U A;  4O3X B;  2KDY A;  6PRN A;  4AKR A;  1IZN A;  1GFN A;  5DL8 A;  2XTR A;  4JFB A;  4FMS A;  3AA1 B;  5IYU A;  1QJP A;  4XNL A;  5JDP A;  5AFU K;  2KXP B;  1HXX A;  4N58 A;  2XE5 A;  4QQ1 A;  2F1T A;  1GFQ A;  3K19 A;  1Q9G A;  4FUV A;  1G90 A;  3G7G A;  4LSI A;  2YNK A;  3POU A;  4FRT A;  1BT9 A;  2MHL A;  4B61 A;  5D5D A;  2KXP A;  1OSM A;  4FZL A;  2N2L A;  2XE3 A;  4PUX A;  3RBH A;  3VE1 A;  2J4U P;  4RL9 A;  1HXT A;  5T5F A;  3AA0 B;  3HOE A;  2M07 A;  4LSF A;  3VE2 A;  3UU2 A;  4FT6 A;  4JCH A;  1ZHX A;  4RLB A;  3DA3 A;  2Y7S A;  3JTY A;  4GF4 A;  4GCP A;  4O49 A;  4N59 A;  3EMN X;  4O3W A;  4O4U A;  2X27 X;  5EE2 A;  3SY7 A;  5AFU L;  2ODJ A;  2QTK A;  2XE2 A;  3AA6 B;  2FGQ X;  2N2M A;  4FZM A;  4AYN A;  4AYD C;  1YS5 A;  2W81 C;  3HOL A;  1MM4 A;  2ERV A;  2O4V A;  3AA0 A;  2KZ7 B;  3HW9 A;  3VZW X;  4FOZ A;  4KR4 A;  3POR A;  1P4T A;  4E1T A;  3FYX A;  4C69 X;  2LFU A;  1PRN A;  1MM5 A;  3T20 A;  4BUM X;  3AA6 A;  3SZV A;  4U9C A;  3TZG A;  4FSO A;  4GCS A;  3AA1 A;  3LK3 B;  3QRA A;  4AYI D;  2KZ7 A;  2XE1 A;  4FSP A;  1OPF A;  3UPG A;  4LSH A;  1ZHZ A;  1THQ A;  3KVD D;  3SZD A;  4D64 A;  5FVN A;  4FZN A;  1BXW A;  2Y2X A;  2JMM A;  2W80 C;  4AUI A;  1GFO A;  8PRN A;  3A2S X;  3AAA B;  4O3Y A;  1Q9F A;  3LK3 A;  2K0L A;  2LHF A;  3AA7 B;  2YPV A;  3AAE B;  1GFP A;  1H6S 1;  1ZHT A;  3HWB A;  4KR8 A;  3VY8 X;  4Z3T A;  1GFM A;  3LK2 B;  4KRA A;  3LK4 2;  7PRN A;  5GV0 A;  3O0E A;  3PQS A;  4G76 A;  4GCQ A;  5PRN A;  3UAQ A;  2GE4 A;  2K4T A;  4RLC A;  2M06 A;  4AYM C;  3WI5 A;  3NSG A;  2Y0L A;  3LK4 1;  4AKR B;  3AAA A;  3AAE A;  4RJX A;  1ZHW A;  1HXU A;  2POR A;  2XMX A;  1MPF A;  2FGR A;  3LK2 A;  3PQU A;  3QRC A;  3DA4 A;  5ADX K;  2Y0H A;  4D65 A;  3POQ A;  4GHB A;  4E1S A;  4FES A;  5DL6 A;  1ORM A;  2XG6 A;  4G75 A;  2OMF A;  4XNK A;  1BH3 A;  3PRN A;  1QJ9 A;  2KC0 A;  5G26 A;  2Y0K A;  2ZLD A;  3VZU X;  3SY9 A;  1E54 A;  5DL7 A;  3VZT X;  4AZL A;  3GP6 A;  2XTQ A;  4AYE C;  4FRX A;  3C5O A;  3SYB A;  2J1N A;  2ZFG A;  3SYS A;  4O3Z A;  1QJ8 A;  2PRN A;  3VY9 X;  5ADX L;  1IZN B;  5DL5 A;  4LSE A;  3T0S A; 
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