1T16A

Crystal structure of the bacterial fatty acid transporter fadl from escherichia coli
Total Genus 110
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
110
sequence length
427
structure length
427
Chain Sequence
AGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAFHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the long-chain fatty acid transporter FadL.
pubmed doi rcsb
molecule tags Lipid transport
source organism Escherichia coli
molecule keywords Long-chain fatty acid transport protein
total genus 110
structure length 427
sequence length 427
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-04-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.60 Mainly Beta Beta Barrel Porin Outer membrane protein transport protein (OMPP1/FadL/TodX) 1t16A00
2R89A 1T16A 3DWOX 3PGRA 2R4NA 2R8AA 2R4LA 3BRYA 2R88A 3PGSA 3DWNA 2R4OA 1T1LA 3BRZA 3PGUA 3PF1A 3BS0A 2R4PA
chains in the Genus database with same CATH superfamily
2W80C 3NSGA 2X27X 4FSPA 3A0HO 3DWOX 1MM4A 1S5LO 2KXPB 4C69X 1HXUA 5KAFO 1MPFA 4AYDC 2R4NA 2IWWA 2KZ7A 4LSEA 2XE3A 3WI4A 3EMNX 2R88A 2ODJA 3KVDD 4FESA 4CTDA 4RJXA 2OMFA 2ERVA 1GFNA 4K3BA 1ORMA 5DL8A 4O4XA 4KRAA 3SYSA 4LSHA 4UB8O 4XNKA 4C4VB 1ZHWA 4LSIA 3RBHA 2R4PA 2X9KA 5G38A 3WI5A 5GV0A 2N2MA 3AA6B 3O0EA 4PR7A 2KXPA 2M06A 1GFPA 1Q9GA 3PGRA 4O3ZA 5T5FA 3BRYA 2QTKA 5FVNA 5TISO 3SY9A 3SZDA 1BXWA 1T1LA 2J1NA 3DA4A 4FMSA 4N58A 4O4UA 5PRNA 1T16A 3NJTA 3LK3A 1Q9FA 3POQA 4KR4A 3VZTX 1IZNB 1P4TA 2XTQA 3HOLA 2ZFGA 5GTHO 5DL6A 5B66O 3BRZA 1GFQA 3HW9A 5G26A 3AAAB 4AYEC 1H6S1 3HOEA 2ZLDA 5G39A 3VY9X 3T20A 3LK2B 3UU2A 1BT9A 4C4VA 5ADXK 4E1SA 2F1VA 5ADXL 3AA6A 3BS0A 1HXTA 4IL6O 3KZIO 2Y0LA 4LSFA 4UB6O 5JDPA 7PRNA 3V8UA 1ZHYA 3LK42 4D65A 4GCQA 2K0LA 5H2FO 5IYUA 4B61A 4O3WA 3SY7A 4N75A 6PRNA 2J4UP 1E54A 3JTYA 4FRTA 4E1TA 3A0BO 1IZNA 1GFMA 2N2LA 2R89A 4FT6A 3K19A 2R8AA 4AFKA 5E79O 4D5UA 3VE2A 3AAAA 3T0SA 1ZHZA 2Y2XA 4JFBA 3VZWX 4AYID 1HXXA 4K3CA 4RLBA 3LK2A 2KDYA 4AUIA 3GP6A 3QRAA 3AA0B 2XE2A 2XE1A 1ZHXA 4O3XB 1PHOA 2WVPA 2JQYA 3POXA 2KC0A 4JCHA 2AXTO 3DA3A 3POUA 1PRNA 4U9CA 4BUMX 1QJ9A 3AA7B 3AA1B 4AKRB 3PGUA 3UPGA 3PQSA 4AYMC 1YS5A 2FGQX 3PORA 4FZMA 4XNLA 5GTIO 3DZMA 2GE4A 1OPFA 8PRNA 4O3YA 4AZLA 4FUVA 2K4TA 2LFUA 4FZLA 4Z3TA 3SYBA 4GF4A 5DL5A 3AA0A 2LHFA 2YNKA 4RLCA 2XTRA 4KR8A 5EE2A 4D64A 3A2SX 4AYNA 5DL7A 4QQ1A 4RJWA 2FGRA 3PGSA 1GFOA 2MNHA 3UAQA 2M07A 3AAEB 4FSOA 4FOZA 4N59A 2W81C 3AA7A 3AA1A 2MHLA 3LK41 2WJRA 3G7GA 4AKRA 4AKMA 3WU2O 2R4OA 3HWBA 2PRNA 5AFUK 1QJ8A 5G3AA 2XG6A 5KAIO 5AFUL 4O49A 3FYXA 3LK3B 4GCPA 3C5OA 3T24A 3TZGA 5B5EO 2XMXA 4GCSA 2PORA 2F1TA 3VY8X 1OSMA 2Y0KA 3SZVA 4N74A 4G75A 1BH3A 3PQUA 1QJPA 2KZ7B 3AAEA 2XE5A 3DWNA 3PF1A 2Y7SA 4PJ0O 2YPVA 3JCUO 4FZNA 4PUXA 3QRCA 4GHBA 2O4VA 2F1CX 2IWVA 4RL9A 3PRNA 1THQA 2JMMA 2R4LA 2WJQA 3VE1A 1G90A 4F4BA 2Y0HA 1ZHTA 4G76A 4C00A 1MM5A 4FQEA 3VZUX 5D5DA 4FRXA
chains in the Genus database with same CATH topology
2R89A 1T16A 3DWOX 3PGRA 2R4NA 2R8AA 2R4LA 3BRYA 2R88A 3PGSA 3DWNA 2R4OA 1T1LA 3BRZA 3PGUA 3PF1A 3BS0A 2R4PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R89 A;  1T16 A;  3DWO X;  3PGR A;  2R4N A;  2R8A A;  2R4L A;  3BRY A;  2R88 A;  3PGS A;  3DWN A;  2R4O A;  1T1L A;  3BRZ A;  3PGU A;  3PF1 A;  3BS0 A;  2R4P A; 
#chains in the Genus database with same CATH topology
 2W80 C;  3NSG A;  2X27 X;  4FSP A;  3A0H O;  3DWO X;  1MM4 A;  1S5L O;  2KXP B;  4C69 X;  1HXU A;  5KAF O;  1MPF A;  4AYD C;  2R4N A;  2IWW A;  2KZ7 A;  4LSE A;  2XE3 A;  3WI4 A;  3EMN X;  2R88 A;  2ODJ A;  3KVD D;  4FES A;  4CTD A;  4RJX A;  2OMF A;  2ERV A;  1GFN A;  4K3B A;  1ORM A;  5DL8 A;  4O4X A;  4KRA A;  3SYS A;  4LSH A;  4UB8 O;  4XNK A;  4C4V B;  1ZHW A;  4LSI A;  3RBH A;  2R4P A;  2X9K A;  5G38 A;  3WI5 A;  5GV0 A;  2N2M A;  3AA6 B;  3O0E A;  4PR7 A;  2KXP A;  2M06 A;  1GFP A;  1Q9G A;  3PGR A;  4O3Z A;  5T5F A;  3BRY A;  2QTK A;  5FVN A;  5TIS O;  3SY9 A;  3SZD A;  1BXW A;  1T1L A;  2J1N A;  3DA4 A;  4FMS A;  4N58 A;  4O4U A;  5PRN A;  1T16 A;  3NJT A;  3LK3 A;  1Q9F A;  3POQ A;  4KR4 A;  3VZT X;  1IZN B;  1P4T A;  2XTQ A;  3HOL A;  2ZFG A;  5GTH O;  5DL6 A;  5B66 O;  3BRZ A;  1GFQ A;  3HW9 A;  5G26 A;  3AAA B;  4AYE C;  1H6S 1;  3HOE A;  2ZLD A;  5G39 A;  3VY9 X;  3T20 A;  3LK2 B;  3UU2 A;  1BT9 A;  4C4V A;  5ADX K;  4E1S A;  2F1V A;  5ADX L;  3AA6 A;  3BS0 A;  1HXT A;  4IL6 O;  3KZI O;  2Y0L A;  4LSF A;  4UB6 O;  5JDP A;  7PRN A;  3V8U A;  1ZHY A;  3LK4 2;  4D65 A;  4GCQ A;  2K0L A;  5H2F O;  5IYU A;  4B61 A;  4O3W A;  3SY7 A;  4N75 A;  6PRN A;  2J4U P;  1E54 A;  3JTY A;  4FRT A;  4E1T A;  3A0B O;  1IZN A;  1GFM A;  2N2L A;  2R89 A;  4FT6 A;  3K19 A;  2R8A A;  4AFK A;  5E79 O;  4D5U A;  3VE2 A;  3AAA A;  3T0S A;  1ZHZ A;  2Y2X A;  4JFB A;  3VZW X;  4AYI D;  1HXX A;  4K3C A;  4RLB A;  3LK2 A;  2KDY A;  4AUI A;  3GP6 A;  3QRA A;  3AA0 B;  2XE2 A;  2XE1 A;  1ZHX A;  4O3X B;  1PHO A;  2WVP A;  2JQY A;  3POX A;  2KC0 A;  4JCH A;  2AXT O;  3DA3 A;  3POU A;  1PRN A;  4U9C A;  4BUM X;  1QJ9 A;  3AA7 B;  3AA1 B;  4AKR B;  3PGU A;  3UPG A;  3PQS A;  4AYM C;  1YS5 A;  2FGQ X;  3POR A;  4FZM A;  4XNL A;  5GTI O;  3DZM A;  2GE4 A;  1OPF A;  8PRN A;  4O3Y A;  4AZL A;  4FUV A;  2K4T A;  2LFU A;  4FZL A;  4Z3T A;  3SYB A;  4GF4 A;  5DL5 A;  3AA0 A;  2LHF A;  2YNK A;  4RLC A;  2XTR A;  4KR8 A;  5EE2 A;  4D64 A;  3A2S X;  4AYN A;  5DL7 A;  4QQ1 A;  4RJW A;  2FGR A;  3PGS A;  1GFO A;  2MNH A;  3UAQ A;  2M07 A;  3AAE B;  4FSO A;  4FOZ A;  4N59 A;  2W81 C;  3AA7 A;  3AA1 A;  2MHL A;  3LK4 1;  2WJR A;  3G7G A;  4AKR A;  4AKM A;  3WU2 O;  2R4O A;  3HWB A;  2PRN A;  5AFU K;  1QJ8 A;  5G3A A;  2XG6 A;  5KAI O;  5AFU L;  4O49 A;  3FYX A;  3LK3 B;  4GCP A;  3C5O A;  3T24 A;  3TZG A;  5B5E O;  2XMX A;  4GCS A;  2POR A;  2F1T A;  3VY8 X;  1OSM A;  2Y0K A;  3SZV A;  4N74 A;  4G75 A;  1BH3 A;  3PQU A;  1QJP A;  2KZ7 B;  3AAE A;  2XE5 A;  3DWN A;  3PF1 A;  2Y7S A;  4PJ0 O;  2YPV A;  3JCU O;  4FZN A;  4PUX A;  3QRC A;  4GHB A;  2O4V A;  2F1C X;  2IWV A;  4RL9 A;  3PRN A;  1THQ A;  2JMM A;  2R4L A;  2WJQ A;  3VE1 A;  1G90 A;  4F4B A;  2Y0H A;  1ZHT A;  4G76 A;  4C00 A;  1MM5 A;  4FQE A;  3VZU X;  5D5D A;  4FRX A; 
#chains in the Genus database with same CATH homology
 2R89 A;  1T16 A;  3DWO X;  3PGR A;  2R4N A;  2R8A A;  2R4L A;  3BRY A;  2R88 A;  3PGS A;  3DWN A;  2R4O A;  1T1L A;  3BRZ A;  3PGU A;  3PF1 A;  3BS0 A;  2R4P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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