1T1L | Genus

Total Genus 102

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	102
sequence length	421
structure length	421
Chain Sequence	AGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lipid transport
source organism	Escherichia coli
publication title	Crystal structure of the long-chain fatty acid transporter FadL. pubmed doi rcsb
molecule keywords	Long-chain fatty acid transport protein
total genus	102
structure length	421
sequence length	421
chains with identical sequence	B
ec nomenclature
pdb deposition date	2004-04-16

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.60	Mainly Beta	Beta Barrel	Porin	Outer membrane protein transport protein (OMPP1/FadL/TodX)	1t1lA00

3PGRA 2R4NA 3DWOX 1T16A 3PF1A 3PGUA 3PGSA 3BRZA 3BRYA 2R88A 2R4LA 2R4OA 3BS0A 1T1LA 2R4PA 2R89A 2R8AA 3DWNA
chains in the Genus database with same CATH superfamily

1IZNA 1GFNA 1PHOA 2YNKA 3DZMA 3GP6A 2FGQX 2YPVA 3NJTA 4QQ1A 1PRNA 2KZ7A 3AAEA 3SY7A 5B5EO 5H2FO 3VZWX 2Y0LA 5GTIO 4AYID 1ZHTA 3LK3A 4LSIA 5DL6A 5DL7A 4K3CA 3POXA 4N59A 5ADXL 2XE3A 4AKRA 4AZLA 4RJWA 3NSGA 4E1TA 4KRAA 4FOZA 4C4VA 3DWNA 5G39A 3VY9X 4O3XB 3HOLA 4JFBA 2Y2XA 3PGSA 4O3WA 4FRXA 5TISO 3POUA 2F1TA 4PUXA 4BUMX 2IWWA 3UPGA 3SY9A 2ODJA 2XMXA 4UB6O 4PR7A 1Q9GA 3UU2A 3FYXA 4F4BA 4XNLA 4FRTA 4N74A 4D64A 4O4UA 2W81C 4FZLA 2R88A 5AFUL 3AAAB 4FT6A 4AKMA 2ERVA 3WU2O 2XE1A 2QTKA 3PORA 2F1CX 2F1VA 2ZFGA 3O0EA 4FUVA 3PQUA 4LSEA 5D5DA 3RBHA 4FQEA 4AFKA 4CTDA 3AA0B 2XTRA 3T20A 5G26A 5E79O 2GE4A 2PORA 3BS0A 4GF4A 4C69X 1E54A 3VY8X 3AA1A 2R8AA 4RLCA 3LK41 2K4TA 4O3YA 3SYBA 4O3ZA 2KXPB 4K3BA 5JDPA 4JCHA 2N2MA 4D65A 1G90A 3G7GA 4FZNA 3QRAA 4FSOA 4G75A 5KAFO 3WI5A 2W80C 5FVNA 1P4TA 1ZHWA 3PF1A 2O4VA 4GCPA 1HXUA 4IL6O 2AXTO 2KDYA 3POQA 4FZMA 2M07A 2KXPA 2XE2A 1H6S1 4KR4A 3SZVA 2IWVA 2JMMA 4LSHA 4PJ0O 2KC0A 3JTYA 3UAQA 4RL9A 1Q9FA 3AA7B 3BRZA 3V8UA 5IYUA 1HXXA 4G76A 3VZTX 1MPFA 4N75A 1S5LO 2N2LA 2M06A 1GFQA 2R89A 3PQSA 5T5FA 4Z3TA 4O49A 2FGRA 3A0HO 3DA4A 4E1SA 3PGUA 1MM4A 1ZHYA 3T24A 2J1NA 2LHFA 3LK2B 4RLBA 4XNKA 3AAAA 1GFPA 1QJPA 3EMNX 5GV0A 3VZUX 2MNHA 1MM5A 2X9KA 4LSFA 2R4LA 2MHLA 3PRNA 2Y7SA 3JCUO 5B66O 3AA0A 5G3AA 2XG6A 3SZDA 2Y0KA 4KR8A 1IZNB 8PRNA 1YS5A 1T1LA 1BH3A 1OPFA 2KZ7B 2OMFA 2ZLDA 3AAEB 4GCSA 2WJRA 5EE2A 5KAIO 4B61A 3HWBA 1HXTA 3KZIO 4AYMC 4GHBA 3KVDD 3AA6B 4O4XA 1GFMA 3K19A 4FESA 4U9CA 4AYEC 5AFUK 2LFUA 1QJ9A 1QJ8A 4C00A 2X27X 4C4VB 6PRNA 1BXWA 2J4UP 4N58A 2WVPA 3C5OA 2WJQA 3VE2A 4AUIA 3QRCA 3A2SX 3AA7A 1GFOA 3AA6A 2XE5A 3PGRA 1ORMA 1T16A 2JQYA 1THQA 5DL5A 3HW9A 2K0LA 5DL8A 3BRYA 4AYNA 4D5UA 4AYDC 3TZGA 3VE1A 4UB8O 5ADXK 1BT9A 2R4NA 4RJXA 1OSMA 1ZHXA 3A0BO 3LK2A 2R4OA 3T0SA 3SYSA 7PRNA 2R4PA 5G38A 3WI4A 5GTHO 3DWOX 3LK42 2Y0HA 3AA1B 4GCQA 2XTQA 3LK3B 4FMSA 1ZHZA 5PRNA 4FSPA 3HOEA 4AKRB 3DA3A 2PRNA
chains in the Genus database with same CATH topology

3PGRA 2R4NA 3DWOX 1T16A 3PF1A 3PGUA 3PGSA 3BRZA 3BRYA 2R88A 2R4LA 2R4OA 3BS0A 1T1LA 2R4PA 2R89A 2R8AA 3DWNA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3PGR A;  2R4N A;  3DWO X;  1T16 A;  3PF1 A;  3PGU A;  3PGS A;  3BRZ A;  3BRY A;  2R88 A;  2R4L A;  2R4O A;  3BS0 A;  1T1L A;  2R4P A;  2R89 A;  2R8A A;  3DWN A; 
#chains in the Genus database with same CATH topology
 1IZN A;  1GFN A;  1PHO A;  2YNK A;  3DZM A;  3GP6 A;  2FGQ X;  2YPV A;  3NJT A;  4QQ1 A;  1PRN A;  2KZ7 A;  3AAE A;  3SY7 A;  5B5E O;  5H2F O;  3VZW X;  2Y0L A;  5GTI O;  4AYI D;  1ZHT A;  3LK3 A;  4LSI A;  5DL6 A;  5DL7 A;  4K3C A;  3POX A;  4N59 A;  5ADX L;  2XE3 A;  4AKR A;  4AZL A;  4RJW A;  3NSG A;  4E1T A;  4KRA A;  4FOZ A;  4C4V A;  3DWN A;  5G39 A;  3VY9 X;  4O3X B;  3HOL A;  4JFB A;  2Y2X A;  3PGS A;  4O3W A;  4FRX A;  5TIS O;  3POU A;  2F1T A;  4PUX A;  4BUM X;  2IWW A;  3UPG A;  3SY9 A;  2ODJ A;  2XMX A;  4UB6 O;  4PR7 A;  1Q9G A;  3UU2 A;  3FYX A;  4F4B A;  4XNL A;  4FRT A;  4N74 A;  4D64 A;  4O4U A;  2W81 C;  4FZL A;  2R88 A;  5AFU L;  3AAA B;  4FT6 A;  4AKM A;  2ERV A;  3WU2 O;  2XE1 A;  2QTK A;  3POR A;  2F1C X;  2F1V A;  2ZFG A;  3O0E A;  4FUV A;  3PQU A;  4LSE A;  5D5D A;  3RBH A;  4FQE A;  4AFK A;  4CTD A;  3AA0 B;  2XTR A;  3T20 A;  5G26 A;  5E79 O;  2GE4 A;  2POR A;  3BS0 A;  4GF4 A;  4C69 X;  1E54 A;  3VY8 X;  3AA1 A;  2R8A A;  4RLC A;  3LK4 1;  2K4T A;  4O3Y A;  3SYB A;  4O3Z A;  2KXP B;  4K3B A;  5JDP A;  4JCH A;  2N2M A;  4D65 A;  1G90 A;  3G7G A;  4FZN A;  3QRA A;  4FSO A;  4G75 A;  5KAF O;  3WI5 A;  2W80 C;  5FVN A;  1P4T A;  1ZHW A;  3PF1 A;  2O4V A;  4GCP A;  1HXU A;  4IL6 O;  2AXT O;  2KDY A;  3POQ A;  4FZM A;  2M07 A;  2KXP A;  2XE2 A;  1H6S 1;  4KR4 A;  3SZV A;  2IWV A;  2JMM A;  4LSH A;  4PJ0 O;  2KC0 A;  3JTY A;  3UAQ A;  4RL9 A;  1Q9F A;  3AA7 B;  3BRZ A;  3V8U A;  5IYU A;  1HXX A;  4G76 A;  3VZT X;  1MPF A;  4N75 A;  1S5L O;  2N2L A;  2M06 A;  1GFQ A;  2R89 A;  3PQS A;  5T5F A;  4Z3T A;  4O49 A;  2FGR A;  3A0H O;  3DA4 A;  4E1S A;  3PGU A;  1MM4 A;  1ZHY A;  3T24 A;  2J1N A;  2LHF A;  3LK2 B;  4RLB A;  4XNK A;  3AAA A;  1GFP A;  1QJP A;  3EMN X;  5GV0 A;  3VZU X;  2MNH A;  1MM5 A;  2X9K A;  4LSF A;  2R4L A;  2MHL A;  3PRN A;  2Y7S A;  3JCU O;  5B66 O;  3AA0 A;  5G3A A;  2XG6 A;  3SZD A;  2Y0K A;  4KR8 A;  1IZN B;  8PRN A;  1YS5 A;  1T1L A;  1BH3 A;  1OPF A;  2KZ7 B;  2OMF A;  2ZLD A;  3AAE B;  4GCS A;  2WJR A;  5EE2 A;  5KAI O;  4B61 A;  3HWB A;  1HXT A;  3KZI O;  4AYM C;  4GHB A;  3KVD D;  3AA6 B;  4O4X A;  1GFM A;  3K19 A;  4FES A;  4U9C A;  4AYE C;  5AFU K;  2LFU A;  1QJ9 A;  1QJ8 A;  4C00 A;  2X27 X;  4C4V B;  6PRN A;  1BXW A;  2J4U P;  4N58 A;  2WVP A;  3C5O A;  2WJQ A;  3VE2 A;  4AUI A;  3QRC A;  3A2S X;  3AA7 A;  1GFO A;  3AA6 A;  2XE5 A;  3PGR A;  1ORM A;  1T16 A;  2JQY A;  1THQ A;  5DL5 A;  3HW9 A;  2K0L A;  5DL8 A;  3BRY A;  4AYN A;  4D5U A;  4AYD C;  3TZG A;  3VE1 A;  4UB8 O;  5ADX K;  1BT9 A;  2R4N A;  4RJX A;  1OSM A;  1ZHX A;  3A0B O;  3LK2 A;  2R4O A;  3T0S A;  3SYS A;  7PRN A;  2R4P A;  5G38 A;  3WI4 A;  5GTH O;  3DWO X;  3LK4 2;  2Y0H A;  3AA1 B;  4GCQ A;  2XTQ A;  3LK3 B;  4FMS A;  1ZHZ A;  5PRN A;  4FSP A;  3HOE A;  4AKR B;  3DA3 A;  2PRN A; 
#chains in the Genus database with same CATH homology
 3PGR A;  2R4N A;  3DWO X;  1T16 A;  3PF1 A;  3PGU A;  3PGS A;  3BRZ A;  3BRY A;  2R88 A;  2R4L A;  2R4O A;  3BS0 A;  1T1L A;  2R4P A;  2R89 A;  2R8A A;  3DWN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1T1LA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN