1E54A

Anion-selective porin from comamonas acidovorans
Total Genus 95
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
332
structure length
332
Chain Sequence
ESSVTLFGIVDTNVAYVNKDAAGDSRYGLGTSGASTSRLGLRGTEDLGGGLKAGFWLEGEIFGDDGNASGFNFKRRSTVSLSGNFGEVRLGRDLVPTSQKLTSYDLFSATGIGPFMGFRNWAAGQGADDNGIRANNLISYYTPNFGGFNAGFGYAFDEKQTIGTADSVGRYIGGYVAYDNGPLSASLGLAQQKTAVGGLATDRDEITLGASYNFGVAKLSGLLQQTKFKRDIGGDIKTNSYMLGASAPVGGVGEVKLQYALYDQKAIDSKAHQITLGYVHNLSKRTALYGNLAFLKNKDASTLGLQAKGVYAGGVQAGESQTGVQVGIRHAF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Omp32, the Anion-Selective Porin from Comamonas Acidovorans, in Complex with a Periplasmic Peptideat 2.1 A Resolution
pubmed doi rcsb
molecule tags Outer membrane protein
molecule keywords OUTER MEMBRANE PORIN PROTEIN 32
total genus 95
structure length 332
sequence length 332
ec nomenclature
pdb deposition date 2000-07-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 1e54A00
2Y0HA 4LSHA 2XE2A 3SY9A 3UU2A 4AUIA 2QTKA 1GFOA 4D5UA 2ZLDA 4D64A 3PRNA 4KR8A 3PORA 5DL6A 1BH3A 2FGQX 2OMFA 4LSEA 6PRNA 7PRNA 3SY7A 2ODJA 1MPFA 5JDPA 2XG6A 3VY9X 5DL5A 2XE5A 3SZDA 3WI4A 2Y2XA 3VZUX 4C69X 4RJWA 1GFPA 4GCQA 5PRNA 1BT9A 5FVNA 4KRAA 2ZFGA 3VY8X 5DL7A 3NSGA 3UPGA 3POQA 3POXA 3HW9A 1HXUA 4FOZA 4BUMX 3SZVA 3A2SX 4FSPA 4GCPA 1GFNA 2PRNA 3T0SA 4LSIA 1GFQA 3HWBA 3SYSA 2XE3A 1E54A 3K19A 5DL8A 3T20A 2K4TA 3EMNX 3T24A 4FT6A 3VZTX 4FMSA 3POUA 1HXTA 1H6S1 2PORA 3WI5A 4FRXA 2Y0KA 2FGRA 2O4VA 4FRTA 3SYBA 8PRNA 1OSMA 4LSFA 4FSOA 3JTYA 4GCSA 2XE1A 1OPFA 1PHOA 3O0EA 3VZWX 4D65A 4JFBA 2J4UP 4RJXA 2J1NA 3FYXA 1GFMA 1PRNA 1HXXA 2Y0LA 4KR4A
chains in the Genus database with same CATH superfamily
2JQYA 3GP6A 2Y0HA 3AA0B 2KDYA 4G76A 4LSHA 5KAFO 2XE2A 4FESA 3SY9A 1QJPA 2WVPA 1G90A 1QJ9A 4FQEA 3UU2A 1T1LA 5IYUA 3PF1A 1ZHWA 3JCUO 4AUIA 4AYNA 4XNLA 5G3AA 3A0BO 2QTKA 2YPVA 4CTDA 1GFOA 5G38A 4D5UA 2ZLDA 4AFKA 4AYID 3DZMA 2R4OA 2WJQA 4D64A 3PRNA 4KR8A 3DWNA 3PORA 5T5FA 5B5EO 1P4TA 3BRYA 5DL6A 1BH3A 2FGQX 2JMMA 2YNKA 4FZNA 2OMFA 4LSEA 3TZGA 3C5OA 2M06A 3AA6A 3A0HO 3PGRA 3SY7A 4E1TA 6PRNA 7PRNA 1MM4A 4N58A 3G7GA 4PJ0O 2ODJA 3AA0A 3HOEA 3NJTA 1MPFA 1ORMA 1ZHTA 2F1TA 2XG6A 5GV0A 5JDPA 4N74A 3VY9X 3DA4A 1IZNA 5DL5A 1T16A 3PGUA 4PR7A 4AYDC 2XE5A 3SZDA 2F1VA 1IZNB 3WI4A 2Y2XA 1THQA 2W80C 4F4BA 4PUXA 2F1CX 4RL9A 3V8UA 3VZUX 4C69X 4RJWA 1GFPA 3WU2O 4XNKA 4GCQA 5PRNA 1BT9A 4U9CA 5FVNA 4KRAA 4RLCA 4Z3TA 2R89A 2ZFGA 3VE2A 4C00A 5AFUK 1Q9FA 4UB8O 1QJ8A 4GF4A 2W81C 1MM5A 3AAEA 4JCHA 4G75A 2K0LA 5EE2A 4C4VA 5E79O 3LK42 3AAEB 4K3BA 3NSGA 5DL7A 3VY8X 2IWVA 3POQA 4FZLA 4N75A 3POXA 4O4XA 3HW9A 3VE1A 4AZLA 4C4VB 2M07A 1HXUA 4B61A 1BXWA 3KVDD 3UAQA 2LFUA 4FOZA 1S5LO 4BUMX 2R8AA 2R4PA 3SZVA 3A2SX 4FSPA 4GCPA 1GFNA 5D5DA 2PRNA 3T0SA 4LSIA 5H2FO 5G39A 2N2LA 4RLBA 5B66O 4O49A 1GFQA 3HWBA 3SYSA 3RBHA 2XE3A 1E54A 4AYEC 5GTHO 3BRZA 3K19A 1ZHYA 3BS0A 2ERVA 5DL8A 2AXTO 3T20A 2K4TA 2KXPA 2WJRA 2Y7SA 3AA1B 3EMNX 2KZ7A 2R4LA 3AAAB 4FUVA 4FZMA 4K3CA 5G26A 2KXPB 4FT6A 3T24A 3VZTX 5ADXK 2KZ7B 1YS5A 2KC0A 4FMSA 3KZIO 4QQ1A 4O3YA 4O4UA 4AKRA 3LK2B 1HXTA 3LK3A 3POUA 1H6S1 2PORA 3LK41 4AKRB 3UPGA 2LHFA 3LK3B 3QRCA 3WI5A 4IL6O 2IWWA 1ZHXA 4FRXA 2Y0KA 2R88A 5GTIO 3PQUA 2FGRA 3HOLA 4GHBA 2GE4A 2O4VA 3AA7A 2N2MA 4FRTA 3SYBA 1Q9GA 8PRNA 4E1SA 2X9KA 3AA7B 1OSMA 4LSFA 4FSOA 4UB6O 4O3ZA 2MNHA 3JTYA 4AYMC 4AKMA 2XTQA 3AA1A 2XTRA 3AAAA 4GCSA 2XE1A 5TISO 5ADXL 1OPFA 1PHOA 3O0EA 3VZWX 4D65A 4JFBA 2J4UP 4RJXA 5AFUL 3PQSA 4N59A 3PGSA 2J1NA 2MHLA 2X27X 2R4NA 3FYXA 4O3XB 1GFMA 4O3WA 3LK2A 3AA6B 2XMXA 5KAIO 1PRNA 1ZHZA 1HXXA 2Y0LA 3QRAA 4KR4A 3DWOX 3DA3A
chains in the Genus database with same CATH topology
3GP6A 2Y0HA 3AA0B 2KDYA 4G76A 4LSHA 2XE2A 4FESA 3SY9A 1QJPA 1G90A 1QJ9A 3UU2A 5IYUA 1ZHWA 4AUIA 4AYNA 4XNLA 2QTKA 2YPVA 1GFOA 4D5UA 2ZLDA 4AFKA 4AYID 4D64A 3PRNA 4KR8A 3PORA 5T5FA 1P4TA 5DL6A 1BH3A 2FGQX 2JMMA 2YNKA 4FZNA 2OMFA 4LSEA 3TZGA 3C5OA 2M06A 3AA6A 4E1TA 6PRNA 3SY7A 7PRNA 1MM4A 4N58A 3G7GA 2ODJA 3AA0A 3HOEA 1MPFA 1ORMA 1ZHTA 2F1TA 2XG6A 5GV0A 5JDPA 3VY9X 3DA4A 1IZNA 5DL5A 4AYDC 2XE5A 3SZDA 2F1VA 1IZNB 3WI4A 2Y2XA 1THQA 2W80C 4F4BA 4PUXA 4RL9A 3V8UA 3VZUX 4C69X 4RJWA 1GFPA 4XNKA 4GCQA 5PRNA 1BT9A 4U9CA 5FVNA 4KRAA 4RLCA 4Z3TA 2ZFGA 3VE2A 5AFUK 1Q9FA 1QJ8A 4GF4A 2W81C 1MM5A 3AAEA 4JCHA 4G75A 2K0LA 3LK42 3AAEB 5DL7A 3NSGA 3VY8X 3UPGA 3POQA 4FZLA 4O4XA 3POXA 3VE1A 3HW9A 4AZLA 2M07A 1HXUA 4B61A 1BXWA 3KVDD 3UAQA 2LFUA 4FOZA 4BUMX 3SZVA 3A2SX 4FSPA 4GCPA 1GFNA 5D5DA 2PRNA 3T0SA 4LSIA 2N2LA 4RLBA 4O49A 1GFQA 3HWBA 3SYSA 3RBHA 2XE3A 1E54A 4AYEC 3K19A 1ZHYA 5DL8A 2ERVA 3T20A 2K4TA 2KXPA 2Y7SA 3AA1B 5EE2A 3EMNX 2KZ7A 3AAAB 4FUVA 4FZMA 5G26A 3T24A 2KXPB 4FT6A 5ADXK 3VZTX 2KZ7B 1YS5A 2KC0A 4FMSA 4QQ1A 4O3YA 4O4UA 4AKRA 3LK2B 1HXTA 3LK3A 3POUA 1H6S1 2PORA 3LK41 4AKRB 2LHFA 3LK3B 3QRCA 3WI5A 1ZHXA 4FRXA 2Y0KA 3PQUA 2FGRA 3HOLA 4GHBA 2GE4A 2O4VA 3AA7A 2N2MA 4FRTA 3SYBA 1Q9GA 8PRNA 4E1SA 3AA7B 1OSMA 4LSFA 4FSOA 4O3ZA 2MNHA 3JTYA 4AYMC 4AKMA 2XTQA 3AA1A 2XTRA 3AAAA 4GCSA 2XE1A 5ADXL 1OPFA 1PHOA 3O0EA 3VZWX 4D65A 4JFBA 2J4UP 4RJXA 5AFUL 3PQSA 4N59A 2J1NA 2X27X 2MHLA 3FYXA 4O3XB 1GFMA 4O3WA 3LK2A 3AA6B 2XMXA 1PRNA 1ZHZA 1HXXA 2Y0LA 3QRAA 4KR4A 3DA3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y0H A;  4LSH A;  2XE2 A;  3SY9 A;  3UU2 A;  4AUI A;  2QTK A;  1GFO A;  4D5U A;  2ZLD A;  4D64 A;  3PRN A;  4KR8 A;  3POR A;  5DL6 A;  1BH3 A;  2FGQ X;  2OMF A;  4LSE A;  6PRN A;  7PRN A;  3SY7 A;  2ODJ A;  1MPF A;  5JDP A;  2XG6 A;  3VY9 X;  5DL5 A;  2XE5 A;  3SZD A;  3WI4 A;  2Y2X A;  3VZU X;  4C69 X;  4RJW A;  1GFP A;  4GCQ A;  5PRN A;  1BT9 A;  5FVN A;  4KRA A;  2ZFG A;  3VY8 X;  5DL7 A;  3NSG A;  3UPG A;  3POQ A;  3POX A;  3HW9 A;  1HXU A;  4FOZ A;  4BUM X;  3SZV A;  3A2S X;  4FSP A;  4GCP A;  1GFN A;  2PRN A;  3T0S A;  4LSI A;  1GFQ A;  3HWB A;  3SYS A;  2XE3 A;  1E54 A;  3K19 A;  5DL8 A;  3T20 A;  2K4T A;  3EMN X;  3T24 A;  4FT6 A;  3VZT X;  4FMS A;  3POU A;  1HXT A;  1H6S 1;  2POR A;  3WI5 A;  4FRX A;  2Y0K A;  2FGR A;  2O4V A;  4FRT A;  3SYB A;  8PRN A;  1OSM A;  4LSF A;  4FSO A;  3JTY A;  4GCS A;  2XE1 A;  1OPF A;  1PHO A;  3O0E A;  3VZW X;  4D65 A;  4JFB A;  2J4U P;  4RJX A;  2J1N A;  3FYX A;  1GFM A;  1PRN A;  1HXX A;  2Y0L A;  4KR4 A; 
#chains in the Genus database with same CATH topology
 2JQY A;  3GP6 A;  2Y0H A;  3AA0 B;  2KDY A;  4G76 A;  4LSH A;  5KAF O;  2XE2 A;  4FES A;  3SY9 A;  1QJP A;  2WVP A;  1G90 A;  1QJ9 A;  4FQE A;  3UU2 A;  1T1L A;  5IYU A;  3PF1 A;  1ZHW A;  3JCU O;  4AUI A;  4AYN A;  4XNL A;  5G3A A;  3A0B O;  2QTK A;  2YPV A;  4CTD A;  1GFO A;  5G38 A;  4D5U A;  2ZLD A;  4AFK A;  4AYI D;  3DZM A;  2R4O A;  2WJQ A;  4D64 A;  3PRN A;  4KR8 A;  3DWN A;  3POR A;  5T5F A;  5B5E O;  1P4T A;  3BRY A;  5DL6 A;  1BH3 A;  2FGQ X;  2JMM A;  2YNK A;  4FZN A;  2OMF A;  4LSE A;  3TZG A;  3C5O A;  2M06 A;  3AA6 A;  3A0H O;  3PGR A;  3SY7 A;  4E1T A;  6PRN A;  7PRN A;  1MM4 A;  4N58 A;  3G7G A;  4PJ0 O;  2ODJ A;  3AA0 A;  3HOE A;  3NJT A;  1MPF A;  1ORM A;  1ZHT A;  2F1T A;  2XG6 A;  5GV0 A;  5JDP A;  4N74 A;  3VY9 X;  3DA4 A;  1IZN A;  5DL5 A;  1T16 A;  3PGU A;  4PR7 A;  4AYD C;  2XE5 A;  3SZD A;  2F1V A;  1IZN B;  3WI4 A;  2Y2X A;  1THQ A;  2W80 C;  4F4B A;  4PUX A;  2F1C X;  4RL9 A;  3V8U A;  3VZU X;  4C69 X;  4RJW A;  1GFP A;  3WU2 O;  4XNK A;  4GCQ A;  5PRN A;  1BT9 A;  4U9C A;  5FVN A;  4KRA A;  4RLC A;  4Z3T A;  2R89 A;  2ZFG A;  3VE2 A;  4C00 A;  5AFU K;  1Q9F A;  4UB8 O;  1QJ8 A;  4GF4 A;  2W81 C;  1MM5 A;  3AAE A;  4JCH A;  4G75 A;  2K0L A;  5EE2 A;  4C4V A;  5E79 O;  3LK4 2;  3AAE B;  4K3B A;  3NSG A;  5DL7 A;  3VY8 X;  2IWV A;  3POQ A;  4FZL A;  4N75 A;  3POX A;  4O4X A;  3HW9 A;  3VE1 A;  4AZL A;  4C4V B;  2M07 A;  1HXU A;  4B61 A;  1BXW A;  3KVD D;  3UAQ A;  2LFU A;  4FOZ A;  1S5L O;  4BUM X;  2R8A A;  2R4P A;  3SZV A;  3A2S X;  4FSP A;  4GCP A;  1GFN A;  5D5D A;  2PRN A;  3T0S A;  4LSI A;  5H2F O;  5G39 A;  2N2L A;  4RLB A;  5B66 O;  4O49 A;  1GFQ A;  3HWB A;  3SYS A;  3RBH A;  2XE3 A;  1E54 A;  4AYE C;  5GTH O;  3BRZ A;  3K19 A;  1ZHY A;  3BS0 A;  2ERV A;  5DL8 A;  2AXT O;  3T20 A;  2K4T A;  2KXP A;  2WJR A;  2Y7S A;  3AA1 B;  3EMN X;  2KZ7 A;  2R4L A;  3AAA B;  4FUV A;  4FZM A;  4K3C A;  5G26 A;  2KXP B;  4FT6 A;  3T24 A;  3VZT X;  5ADX K;  2KZ7 B;  1YS5 A;  2KC0 A;  4FMS A;  3KZI O;  4QQ1 A;  4O3Y A;  4O4U A;  4AKR A;  3LK2 B;  1HXT A;  3LK3 A;  3POU A;  1H6S 1;  2POR A;  3LK4 1;  4AKR B;  3UPG A;  2LHF A;  3LK3 B;  3QRC A;  3WI5 A;  4IL6 O;  2IWW A;  1ZHX A;  4FRX A;  2Y0K A;  2R88 A;  5GTI O;  3PQU A;  2FGR A;  3HOL A;  4GHB A;  2GE4 A;  2O4V A;  3AA7 A;  2N2M A;  4FRT A;  3SYB A;  1Q9G A;  8PRN A;  4E1S A;  2X9K A;  3AA7 B;  1OSM A;  4LSF A;  4FSO A;  4UB6 O;  4O3Z A;  2MNH A;  3JTY A;  4AYM C;  4AKM A;  2XTQ A;  3AA1 A;  2XTR A;  3AAA A;  4GCS A;  2XE1 A;  5TIS O;  5ADX L;  1OPF A;  1PHO A;  3O0E A;  3VZW X;  4D65 A;  4JFB A;  2J4U P;  4RJX A;  5AFU L;  3PQS A;  4N59 A;  3PGS A;  2J1N A;  2MHL A;  2X27 X;  2R4N A;  3FYX A;  4O3X B;  1GFM A;  4O3W A;  3LK2 A;  3AA6 B;  2XMX A;  5KAI O;  1PRN A;  1ZHZ A;  1HXX A;  2Y0L A;  3QRA A;  4KR4 A;  3DWO X;  3DA3 A; 
#chains in the Genus database with same CATH homology
 3GP6 A;  2Y0H A;  3AA0 B;  2KDY A;  4G76 A;  4LSH A;  2XE2 A;  4FES A;  3SY9 A;  1QJP A;  1G90 A;  1QJ9 A;  3UU2 A;  5IYU A;  1ZHW A;  4AUI A;  4AYN A;  4XNL A;  2QTK A;  2YPV A;  1GFO A;  4D5U A;  2ZLD A;  4AFK A;  4AYI D;  4D64 A;  3PRN A;  4KR8 A;  3POR A;  5T5F A;  1P4T A;  5DL6 A;  1BH3 A;  2FGQ X;  2JMM A;  2YNK A;  4FZN A;  2OMF A;  4LSE A;  3TZG A;  3C5O A;  2M06 A;  3AA6 A;  4E1T A;  6PRN A;  3SY7 A;  7PRN A;  1MM4 A;  4N58 A;  3G7G A;  2ODJ A;  3AA0 A;  3HOE A;  1MPF A;  1ORM A;  1ZHT A;  2F1T A;  2XG6 A;  5GV0 A;  5JDP A;  3VY9 X;  3DA4 A;  1IZN A;  5DL5 A;  4AYD C;  2XE5 A;  3SZD A;  2F1V A;  1IZN B;  3WI4 A;  2Y2X A;  1THQ A;  2W80 C;  4F4B A;  4PUX A;  4RL9 A;  3V8U A;  3VZU X;  4C69 X;  4RJW A;  1GFP A;  4XNK A;  4GCQ A;  5PRN A;  1BT9 A;  4U9C A;  5FVN A;  4KRA A;  4RLC A;  4Z3T A;  2ZFG A;  3VE2 A;  5AFU K;  1Q9F A;  1QJ8 A;  4GF4 A;  2W81 C;  1MM5 A;  3AAE A;  4JCH A;  4G75 A;  2K0L A;  3LK4 2;  3AAE B;  5DL7 A;  3NSG A;  3VY8 X;  3UPG A;  3POQ A;  4FZL A;  4O4X A;  3POX A;  3VE1 A;  3HW9 A;  4AZL A;  2M07 A;  1HXU A;  4B61 A;  1BXW A;  3KVD D;  3UAQ A;  2LFU A;  4FOZ A;  4BUM X;  3SZV A;  3A2S X;  4FSP A;  4GCP A;  1GFN A;  5D5D A;  2PRN A;  3T0S A;  4LSI A;  2N2L A;  4RLB A;  4O49 A;  1GFQ A;  3HWB A;  3SYS A;  3RBH A;  2XE3 A;  1E54 A;  4AYE C;  3K19 A;  1ZHY A;  5DL8 A;  2ERV A;  3T20 A;  2K4T A;  2KXP A;  2Y7S A;  3AA1 B;  5EE2 A;  3EMN X;  2KZ7 A;  3AAA B;  4FUV A;  4FZM A;  5G26 A;  3T24 A;  2KXP B;  4FT6 A;  5ADX K;  3VZT X;  2KZ7 B;  1YS5 A;  2KC0 A;  4FMS A;  4QQ1 A;  4O3Y A;  4O4U A;  4AKR A;  3LK2 B;  1HXT A;  3LK3 A;  3POU A;  1H6S 1;  2POR A;  3LK4 1;  4AKR B;  2LHF A;  3LK3 B;  3QRC A;  3WI5 A;  1ZHX A;  4FRX A;  2Y0K A;  3PQU A;  2FGR A;  3HOL A;  4GHB A;  2GE4 A;  2O4V A;  3AA7 A;  2N2M A;  4FRT A;  3SYB A;  1Q9G A;  8PRN A;  4E1S A;  3AA7 B;  1OSM A;  4LSF A;  4FSO A;  4O3Z A;  2MNH A;  3JTY A;  4AYM C;  4AKM A;  2XTQ A;  3AA1 A;  2XTR A;  3AAA A;  4GCS A;  2XE1 A;  5ADX L;  1OPF A;  1PHO A;  3O0E A;  3VZW X;  4D65 A;  4JFB A;  2J4U P;  4RJX A;  5AFU L;  3PQS A;  4N59 A;  2J1N A;  2X27 X;  2MHL A;  3FYX A;  4O3X B;  1GFM A;  4O3W A;  3LK2 A;  3AA6 B;  2XMX A;  1PRN A;  1ZHZ A;  1HXX A;  2Y0L A;  3QRA A;  4KR4 A;  3DA3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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