2AXT | Genus

Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	36
sequence length	242
structure length	242
Chain Sequence	TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEP

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Electron transport
publication title	Towards complete cofactor arrangement in the 3.0 A resolution structure of photosystem II pubmed doi rcsb
molecule keywords	Photosystem Q(B) protein
total genus	36
structure length	242
sequence length	242
chains with identical sequence	o
ec nomenclature
pdb deposition date	2005-09-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
O	PF01716	MSP	Manganese-stabilising protein / photosystem II polypeptide

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.30	Mainly Beta	Beta Barrel	Porin	Photosystem II, cytochrome c-550 precursor	2axtO01
3.30.2050.10	Alpha Beta	2-Layer Sandwich	photosynthetic oxygen evolving center fold	photosynthetic oxygen evolving center domain	2axtO02

5GTHO 5G3AA 3KZIO 5GTIO 5B66O 5H2FO 3JCUO 4UB8O 5G39A 4IL6O 5B5EO 5E79O 4PJ0O 3A0HO 3WU2O 5KAFO 5KAIO 4UB6O 2AXTO 3A0BO 5TISO 5G38A 1S5LO
chains in the Genus database with same CATH superfamily

3AA0B 1HXXA 2KC0A 5GTHO 5GV0A 3SY7A 3PORA 3AA6A 3HOLA 4G75A 5G26A 5G3AA 3LK42 4FUVA 3VZTX 4AYEC 3KZIO 7PRNA 3PGUA 4RJWA 3PF1A 3O0EA 1HXTA 3POXA 3SYSA 3WI4A 1P4TA 2F1TA 3TZGA 4O3XB 4XNKA 4FSPA 4O3WA 4KRAA 1ZHWA 3PGSA 2Y0HA 4U9CA 4LSHA 3T24A 5B5EO 2KDYA 2QTKA 3C5OA 4AZLA 5AFUL 1IZNB 4GCSA 1Q9GA 4FZLA 2R8AA 3AAEB 4N74A 5T5FA 2R4LA 4N59A 1MPFA 8PRNA 3POUA 4AKRA 3V8UA 3LK41 2ZFGA 4FMSA 5EE2A 3K19A 3LK3B 2MNHA 1QJ9A 1T16A 3PRNA 4RLBA 1T1LA 2F1CX 3A2SX 3QRAA 3AAAB 3HWBA 3LK2B 2WVPA 4E1SA 3AAAA 2Y7SA 3AA0A 3SYBA 5D5DA 4N58A 5GTIO 2WJQA 3VE2A 2GE4A 4LSFA 2XG6A 2N2MA 2YNKA 3QRCA 4RJXA 4UB8O 1GFPA 2W81C 4D64A 2M06A 2R4OA 2KXPB 4FRXA 1BXWA 3G7GA 1QJPA 3T0SA 5ADXK 2KXPA 1GFQA 2J1NA 2N2LA 4K3BA 2IWWA 2PRNA 6PRNA 2LFUA 3SZDA 2XTRA 1ZHXA 2ERVA 3GP6A 3WU2O 3NJTA 5KAFO 5PRNA 1ZHTA 1YS5A 4AYID 2XTQA 4GHBA 1IZNA 4C69X 5TISO 3VZWX 5G38A 3AAEA 3FYXA 2O4VA 4XNLA 5DL7A 3VY8X 3AA1B 4QQ1A 3DWNA 3NSGA 4BUMX 3DA3A 3HW9A 3BRYA 3LK3A 4D65A 5FVNA 2M07A 5IYUA 2IWVA 2KZ7B 4O3ZA 4AFKA 2WJRA 2KZ7A 3JTYA 3EMNX 3LK2A 4CTDA 5B66O 1OSMA 1ZHZA 4PUXA 2LHFA 5DL8A 3JCUO 4FSOA 3WI5A 4GCQA 4C4VB 1G90A 2XE2A 4KR8A 2K4TA 4C4VA 1E54A 3UPGA 5ADXL 2Y0KA 2MHLA 3BRZA 4FT6A 5E79O 3BS0A 2J4UP 4D5UA 2XE1A 3A0HO 4PR7A 3PGRA 2XE5A 4FESA 5KAIO 1PRNA 4GCPA 3VZUX 2XE3A 4UB6O 5DL6A 2Y0LA 3A0BO 4AKMA 1GFOA 3VY9X 3PQSA 4GF4A 3PQUA 4JFBA 1MM4A 2PORA 4FZNA 4O4UA 4AYMC 4B61A 1HXUA 1BH3A 3AA6B 3AA7B 1BT9A 4FOZA 4C00A 5DL5A 1GFNA 3AA7A 4KR4A 3AA1A 2ODJA 2R88A 4LSIA 4N75A 3SY9A 3UU2A 4AYDC 1OPFA 4O49A 2W80C 1PHOA 4F4BA 2Y2XA 4FQEA 2K0LA 3VE1A 4AYNA 5H2FO 5G39A 3KVDD 3DZMA 4G76A 2X27X 4RL9A 4E1TA 2OMFA 4IL6O 2FGRA 4LSEA 2R89A 3POQA 4O3YA 2F1VA 4K3CA 4PJ0O 3DWOX 3SZVA 1QJ8A 1H6S1 2JQYA 1Q9FA 5AFUK 2ZLDA 4AKRB 2YPVA 1MM5A 1GFMA 4JCHA 4RLCA 1THQA 2AXTO 2X9KA 2XMXA 3DA4A 1ZHYA 4FRTA 3RBHA 2FGQX 4AUIA 4Z3TA 2R4PA 2JMMA 3HOEA 3T20A 2R4NA 4FZMA 5JDPA 4O4XA 1S5LO 1ORMA 3UAQA
chains in the Genus database with same CATH topology

5GTHO 5G3AA 3KZIO 5GTIO 5B66O 5H2FO 3JCUO 4UB8O 5G39A 4IL6O 5B5EO 5E79O 4PJ0O 3A0HO 3WU2O 5KAFO 5KAIO 4UB6O 2AXTO 3A0BO 5TISO 5G38A 1S5LO
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5GTH O;  5G3A A;  3KZI O;  5GTI O;  5B66 O;  5H2F O;  3JCU O;  4UB8 O;  5G39 A;  4IL6 O;  5B5E O;  5E79 O;  4PJ0 O;  3A0H O;  3WU2 O;  5KAF O;  5KAI O;  4UB6 O;  2AXT O;  3A0B O;  5TIS O;  5G38 A;  1S5L O; 
#chains in the Genus database with same CATH topology
 3AA0 B;  1HXX A;  2KC0 A;  5GTH O;  5GV0 A;  3SY7 A;  3POR A;  3AA6 A;  3HOL A;  4G75 A;  5G26 A;  5G3A A;  3LK4 2;  4FUV A;  3VZT X;  4AYE C;  3KZI O;  7PRN A;  3PGU A;  4RJW A;  3PF1 A;  3O0E A;  1HXT A;  3POX A;  3SYS A;  3WI4 A;  1P4T A;  2F1T A;  3TZG A;  4O3X B;  4XNK A;  4FSP A;  4O3W A;  4KRA A;  1ZHW A;  3PGS A;  2Y0H A;  4U9C A;  4LSH A;  3T24 A;  5B5E O;  2KDY A;  2QTK A;  3C5O A;  4AZL A;  5AFU L;  1IZN B;  4GCS A;  1Q9G A;  4FZL A;  2R8A A;  3AAE B;  4N74 A;  5T5F A;  2R4L A;  4N59 A;  1MPF A;  8PRN A;  3POU A;  4AKR A;  3V8U A;  3LK4 1;  2ZFG A;  4FMS A;  5EE2 A;  3K19 A;  3LK3 B;  2MNH A;  1QJ9 A;  1T16 A;  3PRN A;  4RLB A;  1T1L A;  2F1C X;  3A2S X;  3QRA A;  3AAA B;  3HWB A;  3LK2 B;  2WVP A;  4E1S A;  3AAA A;  2Y7S A;  3AA0 A;  3SYB A;  5D5D A;  4N58 A;  5GTI O;  2WJQ A;  3VE2 A;  2GE4 A;  4LSF A;  2XG6 A;  2N2M A;  2YNK A;  3QRC A;  4RJX A;  4UB8 O;  1GFP A;  2W81 C;  4D64 A;  2M06 A;  2R4O A;  2KXP B;  4FRX A;  1BXW A;  3G7G A;  1QJP A;  3T0S A;  5ADX K;  2KXP A;  1GFQ A;  2J1N A;  2N2L A;  4K3B A;  2IWW A;  2PRN A;  6PRN A;  2LFU A;  3SZD A;  2XTR A;  1ZHX A;  2ERV A;  3GP6 A;  3WU2 O;  3NJT A;  5KAF O;  5PRN A;  1ZHT A;  1YS5 A;  4AYI D;  2XTQ A;  4GHB A;  1IZN A;  4C69 X;  5TIS O;  3VZW X;  5G38 A;  3AAE A;  3FYX A;  2O4V A;  4XNL A;  5DL7 A;  3VY8 X;  3AA1 B;  4QQ1 A;  3DWN A;  3NSG A;  4BUM X;  3DA3 A;  3HW9 A;  3BRY A;  3LK3 A;  4D65 A;  5FVN A;  2M07 A;  5IYU A;  2IWV A;  2KZ7 B;  4O3Z A;  4AFK A;  2WJR A;  2KZ7 A;  3JTY A;  3EMN X;  3LK2 A;  4CTD A;  5B66 O;  1OSM A;  1ZHZ A;  4PUX A;  2LHF A;  5DL8 A;  3JCU O;  4FSO A;  3WI5 A;  4GCQ A;  4C4V B;  1G90 A;  2XE2 A;  4KR8 A;  2K4T A;  4C4V A;  1E54 A;  3UPG A;  5ADX L;  2Y0K A;  2MHL A;  3BRZ A;  4FT6 A;  5E79 O;  3BS0 A;  2J4U P;  4D5U A;  2XE1 A;  3A0H O;  4PR7 A;  3PGR A;  2XE5 A;  4FES A;  5KAI O;  1PRN A;  4GCP A;  3VZU X;  2XE3 A;  4UB6 O;  5DL6 A;  2Y0L A;  3A0B O;  4AKM A;  1GFO A;  3VY9 X;  3PQS A;  4GF4 A;  3PQU A;  4JFB A;  1MM4 A;  2POR A;  4FZN A;  4O4U A;  4AYM C;  4B61 A;  1HXU A;  1BH3 A;  3AA6 B;  3AA7 B;  1BT9 A;  4FOZ A;  4C00 A;  5DL5 A;  1GFN A;  3AA7 A;  4KR4 A;  3AA1 A;  2ODJ A;  2R88 A;  4LSI A;  4N75 A;  3SY9 A;  3UU2 A;  4AYD C;  1OPF A;  4O49 A;  2W80 C;  1PHO A;  4F4B A;  2Y2X A;  4FQE A;  2K0L A;  3VE1 A;  4AYN A;  5H2F O;  5G39 A;  3KVD D;  3DZM A;  4G76 A;  2X27 X;  4RL9 A;  4E1T A;  2OMF A;  4IL6 O;  2FGR A;  4LSE A;  2R89 A;  3POQ A;  4O3Y A;  2F1V A;  4K3C A;  4PJ0 O;  3DWO X;  3SZV A;  1QJ8 A;  1H6S 1;  2JQY A;  1Q9F A;  5AFU K;  2ZLD A;  4AKR B;  2YPV A;  1MM5 A;  1GFM A;  4JCH A;  4RLC A;  1THQ A;  2AXT O;  2X9K A;  2XMX A;  3DA4 A;  1ZHY A;  4FRT A;  3RBH A;  2FGQ X;  4AUI A;  4Z3T A;  2R4P A;  2JMM A;  3HOE A;  3T20 A;  2R4N A;  4FZM A;  5JDP A;  4O4X A;  1S5L O;  1ORM A;  3UAQ A; 
#chains in the Genus database with same CATH homology
 5GTH O;  5G3A A;  3KZI O;  5GTI O;  5B66 O;  5H2F O;  3JCU O;  4UB8 O;  5G39 A;  4IL6 O;  5B5E O;  5E79 O;  4PJ0 O;  3A0H O;  3WU2 O;  5KAF O;  5KAI O;  4UB6 O;  2AXT O;  3A0B O;  5TIS O;  5G38 A;  1S5L O;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2AXTO

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations