2JMMA

Nmr solution structure of a minimal transmembrane beta-barrel platform protein
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
156
structure length
156
Chain Sequence
MPKDNTWYTGAKLGWSQYSRENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPRKAQGVQLTAKLGYPKLGTDDLDIYTRLGGMVWRADTSDKDGNGYISAAEASVSPVFAGGVEYVIRRRITPEIATRLEYQWTNNASDNGMLSLGVSYRFGQGEAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A minimal transmembrane beta-barrel platform protein studied by nuclear magnetic resonance
pubmed doi rcsb
molecule tags Membrane protein
source organism Escherichia coli
molecule keywords Outer membrane protein A
total genus 34
structure length 156
sequence length 156
ec nomenclature
pdb deposition date 2006-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01389 OmpA_membrane OmpA-like transmembrane domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 2jmmA00
1MM5A 2LHFA 3QRAA 1THQA 1G90A 2X27X 2M06A 1QJ9A 2ERVA 4PUXA 1ORMA 2MHLA 1Q9GA 1QJPA 2GE4A 1MM4A 2F1TA 2JMMA 3G7GA 1QJ8A 1Q9FA 2MNHA 4RLCA 3GP6A 3QRCA 2K0LA 1P4TA 2N2MA 1BXWA 2N2LA 2M07A 2F1VA 3C5OA
chains in the Genus database with same CATH superfamily
3K19A 1GFMA 2PRNA 1E54A 4UB8O 4LSEA 1G90A 2YPVA 3WI5A 2XE5A 2X27X 2R88A 3PRNA 5KAIO 1GFNA 2R4NA 2OMFA 3PQUA 5H2FO 2Y0KA 4JFBA 5EE2A 3A0BO 6PRNA 2XE1A 4GF4A 2MHLA 4AFKA 3JTYA 4Z3TA 2XTQA 5D5DA 2GE4A 2ODJA 1MM4A 4JCHA 4G76A 4AUIA 4C69X 5G26A 5AFUK 3T20A 2ZFGA 5TISO 2J4UP 4KR8A 3LK3B 2XMXA 4O3YA 4D65A 4CTDA 1Q9FA 2ZLDA 2MNHA 8PRNA 4O3ZA 3SY9A 3VZWX 2KDYA 2WJRA 2XE3A 5T5FA 5AFUL 5B66O 3HWBA 3LK42 2LFUA 1ZHWA 2K0LA 4D5UA 1P4TA 2X9KA 3DA3A 4FZMA 4AKMA 2R4LA 3LK3A 3UAQA 3VE2A 5G39A 2IWVA 3WU2O 2Y0LA 3C5OA 7PRNA 2YNKA 3KZIO 4GCPA 1ZHXA 3QRAA 4N74A 3HW9A 1OPFA 3PGSA 3PQSA 2M06A 4N58A 4FZNA 4AZLA 3VY8X 4PUXA 4E1TA 3VY9X 1ORMA 4FRTA 4LSFA 1HXUA 1IZNB 3HOEA 1HXXA 2XTRA 1HXTA 2J1NA 1Q9GA 4O3XB 2Y7SA 3SZDA 2F1TA 2IWWA 2R4PA 3VE1A 3AAAB 5G3AA 3POQA 3BS0A 4RJWA 4RLBA 4AYEC 3POUA 4D64A 2FGRA 4IL6O 4PR7A 5G38A 4FSPA 1IZNA 1YS5A 5JDPA 4F4BA 4FZLA 4K3BA 4LSIA 3A0HO 3AAAA 5PRNA 1BXWA 2WVPA 4GHBA 4RL9A 2M07A 3NJTA 4GCSA 2PORA 2Y2XA 2R4OA 1MM5A 3AA7B 3UPGA 3SYBA 2LHFA 3NSGA 3DWNA 1THQA 5GV0A 1T1LA 1QJ9A 2ERVA 5GTHO 1OSMA 2AXTO 3RBHA 3VZUX 4UB6O 3TZGA 4FUVA 2XE2A 5DL8A 3SZVA 3AAEB 1ZHZA 3AA7A 4K3CA 3LK2B 2F1CX 2JMMA 3G7GA 4E1SA 4AKRB 2R89A 5DL5A 3BRZA 1QJ8A 3POXA 3T0SA 3A2SX 4FMSA 4KR4A 4FT6A 2K4TA 3LK41 4GCQA 4O4XA 3WI4A 4AYID 1GFQA 4O3WA 3AAEA 1BH3A 4C4VB 4RLCA 3GP6A 4B61A 3QRCA 3LK2A 4RJXA 3O0EA 5E79O 2N2MA 2W81C 3AA1B 3FYXA 4BUMX 5FVNA 4AKRA 5IYUA 3SYSA 5ADXL 1ZHTA 4FSOA 1T16A 3DA4A 4U9CA 2W80C 4QQ1A 4C4VA 3PGUA 4N59A 1ZHYA 2KXPB 5GTIO 1MPFA 3AA6B 3AA1A 2KZ7B 2XG6A 4KRAA 4O49A 4FRXA 4FQEA 4O4UA 4XNLA 5DL7A 4G75A 3UU2A 5B5EO 3HOLA 1PRNA 3BRYA 3AA0B 1QJPA 2KC0A 3PGRA 3EMNX 3KVDD 4N75A 3T24A 3V8UA 2QTKA 4FESA 2KXPA 3SY7A 3VZTX 1GFPA 1BT9A 4AYMC 3AA6A 3JCUO 4LSHA 2KZ7A 5DL6A 5KAFO 4C00A 3DZMA 1H6S1 2Y0HA 4XNKA 2FGQX 3DWOX 2R8AA 3AA0A 2WJQA 5ADXK 4AYDC 4AYNA 2O4VA 3PORA 4FOZA 1PHOA 2JQYA 2N2LA 3PF1A 2F1VA 1GFOA 4PJ0O 1S5LO
chains in the Genus database with same CATH topology
3K19A 1GFMA 2PRNA 1E54A 4LSEA 1G90A 2YPVA 3WI5A 2XE5A 2X27X 3PRNA 1GFNA 2OMFA 3PQUA 2Y0KA 4JFBA 5EE2A 6PRNA 2XE1A 4GF4A 2MHLA 4AFKA 4Z3TA 2XTQA 5D5DA 2GE4A 2ODJA 1MM4A 4JCHA 4G76A 4AUIA 4C69X 5G26A 5AFUK 3T20A 2ZFGA 2J4UP 4KR8A 3LK3B 2XMXA 4O3YA 4D65A 1Q9FA 2ZLDA 2MNHA 8PRNA 4O3ZA 3SY9A 3VZWX 2KDYA 2XE3A 5AFUL 5T5FA 3HWBA 3LK42 2LFUA 1ZHWA 2K0LA 4D5UA 1P4TA 3DA3A 4FZMA 4AKMA 3LK3A 3UAQA 3VE2A 2Y0LA 3C5OA 7PRNA 2YNKA 4GCPA 1ZHXA 3QRAA 3HW9A 1OPFA 3PQSA 4N58A 2M06A 4AZLA 4FZNA 3VY8X 4PUXA 4E1TA 3VY9X 1ORMA 4FRTA 4LSFA 1HXUA 1IZNB 3HOEA 1HXXA 2XTRA 1HXTA 2J1NA 1Q9GA 4O3XB 2Y7SA 3SZDA 2F1TA 3VE1A 3AAAB 3POQA 4RJWA 4RLBA 4AYEC 3POUA 4D64A 2FGRA 4FSPA 1IZNA 1YS5A 5JDPA 4F4BA 4FZLA 4LSIA 3AAAA 5PRNA 1BXWA 4GHBA 4RL9A 2M07A 4GCSA 2PORA 2Y2XA 1MM5A 3AA7B 3UPGA 3SYBA 2LHFA 3NSGA 1THQA 5GV0A 1QJ9A 2ERVA 1OSMA 3RBHA 3VZUX 3TZGA 4FUVA 2XE2A 5DL8A 3SZVA 3AAEB 1ZHZA 3AA7A 3LK2B 2JMMA 3G7GA 4E1SA 4AKRB 5DL5A 1QJ8A 3POXA 3T0SA 3A2SX 4FMSA 4KR4A 4FT6A 2K4TA 3LK41 4GCQA 4O4XA 3WI4A 4AYID 1GFQA 4O3WA 3AAEA 1BH3A 4RLCA 3GP6A 4B61A 3QRCA 3LK2A 4RJXA 3O0EA 4BUMX 2N2MA 2W81C 3AA1B 3FYXA 5FVNA 4AKRA 5IYUA 3SYSA 5ADXL 1ZHTA 4FSOA 3DA4A 4U9CA 2W80C 4QQ1A 4N59A 1ZHYA 2KXPB 1MPFA 3AA6B 3AA1A 2KZ7B 2XG6A 4KRAA 4O49A 4FRXA 4O4UA 4XNLA 5DL7A 3UU2A 4G75A 3HOLA 1PRNA 3AA0B 1QJPA 2KC0A 3EMNX 3KVDD 3T24A 3V8UA 2QTKA 4FESA 2KXPA 3SY7A 3VZTX 1GFPA 1BT9A 4AYMC 3AA6A 4LSHA 5DL6A 2KZ7A 1H6S1 2Y0HA 4XNKA 2FGQX 3AA0A 5ADXK 4AYDC 4AYNA 2O4VA 3PORA 4FOZA 1PHOA 2N2LA 2F1VA 1GFOA 3JTYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MM5 A;  2LHF A;  3QRA A;  1THQ A;  1G90 A;  2X27 X;  2M06 A;  1QJ9 A;  2ERV A;  4PUX A;  1ORM A;  2MHL A;  1Q9G A;  1QJP A;  2GE4 A;  1MM4 A;  2F1T A;  2JMM A;  3G7G A;  1QJ8 A;  1Q9F A;  2MNH A;  4RLC A;  3GP6 A;  3QRC A;  2K0L A;  1P4T A;  2N2M A;  1BXW A;  2N2L A;  2M07 A;  2F1V A;  3C5O A; 
#chains in the Genus database with same CATH topology
 3K19 A;  1GFM A;  2PRN A;  1E54 A;  4UB8 O;  4LSE A;  1G90 A;  2YPV A;  3WI5 A;  2XE5 A;  2X27 X;  2R88 A;  3PRN A;  5KAI O;  1GFN A;  2R4N A;  2OMF A;  3PQU A;  5H2F O;  2Y0K A;  4JFB A;  5EE2 A;  3A0B O;  6PRN A;  2XE1 A;  4GF4 A;  2MHL A;  4AFK A;  3JTY A;  4Z3T A;  2XTQ A;  5D5D A;  2GE4 A;  2ODJ A;  1MM4 A;  4JCH A;  4G76 A;  4AUI A;  4C69 X;  5G26 A;  5AFU K;  3T20 A;  2ZFG A;  5TIS O;  2J4U P;  4KR8 A;  3LK3 B;  2XMX A;  4O3Y A;  4D65 A;  4CTD A;  1Q9F A;  2ZLD A;  2MNH A;  8PRN A;  4O3Z A;  3SY9 A;  3VZW X;  2KDY A;  2WJR A;  2XE3 A;  5T5F A;  5AFU L;  5B66 O;  3HWB A;  3LK4 2;  2LFU A;  1ZHW A;  2K0L A;  4D5U A;  1P4T A;  2X9K A;  3DA3 A;  4FZM A;  4AKM A;  2R4L A;  3LK3 A;  3UAQ A;  3VE2 A;  5G39 A;  2IWV A;  3WU2 O;  2Y0L A;  3C5O A;  7PRN A;  2YNK A;  3KZI O;  4GCP A;  1ZHX A;  3QRA A;  4N74 A;  3HW9 A;  1OPF A;  3PGS A;  3PQS A;  2M06 A;  4N58 A;  4FZN A;  4AZL A;  3VY8 X;  4PUX A;  4E1T A;  3VY9 X;  1ORM A;  4FRT A;  4LSF A;  1HXU A;  1IZN B;  3HOE A;  1HXX A;  2XTR A;  1HXT A;  2J1N A;  1Q9G A;  4O3X B;  2Y7S A;  3SZD A;  2F1T A;  2IWW A;  2R4P A;  3VE1 A;  3AAA B;  5G3A A;  3POQ A;  3BS0 A;  4RJW A;  4RLB A;  4AYE C;  3POU A;  4D64 A;  2FGR A;  4IL6 O;  4PR7 A;  5G38 A;  4FSP A;  1IZN A;  1YS5 A;  5JDP A;  4F4B A;  4FZL A;  4K3B A;  4LSI A;  3A0H O;  3AAA A;  5PRN A;  1BXW A;  2WVP A;  4GHB A;  4RL9 A;  2M07 A;  3NJT A;  4GCS A;  2POR A;  2Y2X A;  2R4O A;  1MM5 A;  3AA7 B;  3UPG A;  3SYB A;  2LHF A;  3NSG A;  3DWN A;  1THQ A;  5GV0 A;  1T1L A;  1QJ9 A;  2ERV A;  5GTH O;  1OSM A;  2AXT O;  3RBH A;  3VZU X;  4UB6 O;  3TZG A;  4FUV A;  2XE2 A;  5DL8 A;  3SZV A;  3AAE B;  1ZHZ A;  3AA7 A;  4K3C A;  3LK2 B;  2F1C X;  2JMM A;  3G7G A;  4E1S A;  4AKR B;  2R89 A;  5DL5 A;  3BRZ A;  1QJ8 A;  3POX A;  3T0S A;  3A2S X;  4FMS A;  4KR4 A;  4FT6 A;  2K4T A;  3LK4 1;  4GCQ A;  4O4X A;  3WI4 A;  4AYI D;  1GFQ A;  4O3W A;  3AAE A;  1BH3 A;  4C4V B;  4RLC A;  3GP6 A;  4B61 A;  3QRC A;  3LK2 A;  4RJX A;  3O0E A;  5E79 O;  2N2M A;  2W81 C;  3AA1 B;  3FYX A;  4BUM X;  5FVN A;  4AKR A;  5IYU A;  3SYS A;  5ADX L;  1ZHT A;  4FSO A;  1T16 A;  3DA4 A;  4U9C A;  2W80 C;  4QQ1 A;  4C4V A;  3PGU A;  4N59 A;  1ZHY A;  2KXP B;  5GTI O;  1MPF A;  3AA6 B;  3AA1 A;  2KZ7 B;  2XG6 A;  4KRA A;  4O49 A;  4FRX A;  4FQE A;  4O4U A;  4XNL A;  5DL7 A;  4G75 A;  3UU2 A;  5B5E O;  3HOL A;  1PRN A;  3BRY A;  3AA0 B;  1QJP A;  2KC0 A;  3PGR A;  3EMN X;  3KVD D;  4N75 A;  3T24 A;  3V8U A;  2QTK A;  4FES A;  2KXP A;  3SY7 A;  3VZT X;  1GFP A;  1BT9 A;  4AYM C;  3AA6 A;  3JCU O;  4LSH A;  2KZ7 A;  5DL6 A;  5KAF O;  4C00 A;  3DZM A;  1H6S 1;  2Y0H A;  4XNK A;  2FGQ X;  3DWO X;  2R8A A;  3AA0 A;  2WJQ A;  5ADX K;  4AYD C;  4AYN A;  2O4V A;  3POR A;  4FOZ A;  1PHO A;  2JQY A;  2N2L A;  3PF1 A;  2F1V A;  1GFO A;  4PJ0 O;  1S5L O; 
#chains in the Genus database with same CATH homology
 3K19 A;  1GFM A;  2PRN A;  1E54 A;  4LSE A;  1G90 A;  2YPV A;  3WI5 A;  2XE5 A;  2X27 X;  3PRN A;  1GFN A;  2OMF A;  3PQU A;  2Y0K A;  4JFB A;  5EE2 A;  6PRN A;  2XE1 A;  4GF4 A;  2MHL A;  4AFK A;  4Z3T A;  2XTQ A;  5D5D A;  2GE4 A;  2ODJ A;  1MM4 A;  4JCH A;  4G76 A;  4AUI A;  4C69 X;  5G26 A;  5AFU K;  3T20 A;  2ZFG A;  2J4U P;  4KR8 A;  3LK3 B;  2XMX A;  4O3Y A;  4D65 A;  1Q9F A;  2ZLD A;  2MNH A;  8PRN A;  4O3Z A;  3SY9 A;  3VZW X;  2KDY A;  2XE3 A;  5AFU L;  5T5F A;  3HWB A;  3LK4 2;  2LFU A;  1ZHW A;  2K0L A;  4D5U A;  1P4T A;  3DA3 A;  4FZM A;  4AKM A;  3LK3 A;  3UAQ A;  3VE2 A;  2Y0L A;  3C5O A;  7PRN A;  2YNK A;  4GCP A;  1ZHX A;  3QRA A;  3HW9 A;  1OPF A;  3PQS A;  4N58 A;  2M06 A;  4AZL A;  4FZN A;  3VY8 X;  4PUX A;  4E1T A;  3VY9 X;  1ORM A;  4FRT A;  4LSF A;  1HXU A;  1IZN B;  3HOE A;  1HXX A;  2XTR A;  1HXT A;  2J1N A;  1Q9G A;  4O3X B;  2Y7S A;  3SZD A;  2F1T A;  3VE1 A;  3AAA B;  3POQ A;  4RJW A;  4RLB A;  4AYE C;  3POU A;  4D64 A;  2FGR A;  4FSP A;  1IZN A;  1YS5 A;  5JDP A;  4F4B A;  4FZL A;  4LSI A;  3AAA A;  5PRN A;  1BXW A;  4GHB A;  4RL9 A;  2M07 A;  4GCS A;  2POR A;  2Y2X A;  1MM5 A;  3AA7 B;  3UPG A;  3SYB A;  2LHF A;  3NSG A;  1THQ A;  5GV0 A;  1QJ9 A;  2ERV A;  1OSM A;  3RBH A;  3VZU X;  3TZG A;  4FUV A;  2XE2 A;  5DL8 A;  3SZV A;  3AAE B;  1ZHZ A;  3AA7 A;  3LK2 B;  2JMM A;  3G7G A;  4E1S A;  4AKR B;  5DL5 A;  1QJ8 A;  3POX A;  3T0S A;  3A2S X;  4FMS A;  4KR4 A;  4FT6 A;  2K4T A;  3LK4 1;  4GCQ A;  4O4X A;  3WI4 A;  4AYI D;  1GFQ A;  4O3W A;  3AAE A;  1BH3 A;  4RLC A;  3GP6 A;  4B61 A;  3QRC A;  3LK2 A;  4RJX A;  3O0E A;  4BUM X;  2N2M A;  2W81 C;  3AA1 B;  3FYX A;  5FVN A;  4AKR A;  5IYU A;  3SYS A;  5ADX L;  1ZHT A;  4FSO A;  3DA4 A;  4U9C A;  2W80 C;  4QQ1 A;  4N59 A;  1ZHY A;  2KXP B;  1MPF A;  3AA6 B;  3AA1 A;  2KZ7 B;  2XG6 A;  4KRA A;  4O49 A;  4FRX A;  4O4U A;  4XNL A;  5DL7 A;  3UU2 A;  4G75 A;  3HOL A;  1PRN A;  3AA0 B;  1QJP A;  2KC0 A;  3EMN X;  3KVD D;  3T24 A;  3V8U A;  2QTK A;  4FES A;  2KXP A;  3SY7 A;  3VZT X;  1GFP A;  1BT9 A;  4AYM C;  3AA6 A;  4LSH A;  5DL6 A;  2KZ7 A;  1H6S 1;  2Y0H A;  4XNK A;  2FGQ X;  3AA0 A;  5ADX K;  4AYD C;  4AYN A;  2O4V A;  3POR A;  4FOZ A;  1PHO A;  2N2L A;  2F1V A;  1GFO A;  3JTY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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