2M06 | Genus

Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	20
sequence length	148
structure length	148
Chain Sequence	ATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Membrane protein
source organism	Escherichia coli
publication title	Optimized phospholipid bilayer nanodiscs facilitate high-resolution structure determination of membrane proteins. pubmed doi rcsb
molecule keywords	Outer membrane protein X
total genus	20
structure length	148
sequence length	148
ec nomenclature
pdb deposition date	2012-10-21

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.20	Mainly Beta	Beta Barrel	Porin	Porin	2m06A00

1G90A 2K0LA 1P4TA 1BXWA 4RLCA 2GE4A 3GP6A 2MNHA 1ORMA 2MHLA 1MM5A 1Q9FA 1QJ9A 1THQA 2JMMA 2M07A 2ERVA 2M06A 4PUXA 1QJ8A 2N2MA 1Q9GA 2LHFA 3C5OA 2X27X 3QRAA 3G7GA 2F1TA 2F1VA 3QRCA 2N2LA 1MM4A 1QJPA
chains in the Genus database with same CATH superfamily

1G90A 4LSIA 3WI4A 3VZWX 4E1SA 1P4TA 4U9CA 3TZGA 2XMXA 3PGRA 3JCUO 2IWVA 5GTIO 5JDPA 3VE2A 4GCPA 2R89A 4LSHA 2X9KA 3DWOX 3SY9A 2XG6A 2MNHA 2Y0HA 6PRNA 4K3CA 3T20A 1ORMA 3POXA 2MHLA 2KXPA 4PJ0O 1QJ9A 2ODJA 2K4TA 3AAEB 4N58A 4AFKA 4AZLA 8PRNA 4LSEA 2JQYA 3A0BO 4LSFA 2ERVA 1T1LA 5DL7A 2J4UP 2FGQX 2XE5A 4O4XA 3LK2B 3PGSA 4FZNA 1ZHXA 3V8UA 1ZHYA 1Q9GA 2LHFA 3QRAA 2Y0LA 3LK3A 3SZDA 4D5UA 4O3XB 3PRNA 4FQEA 4FRTA 4FZMA 4XNLA 5E79O 3BRZA 4AKRB 5B66O 3HOLA 4FRXA 4KR4A 3UAQA 2IWWA 2PRNA 2R88A 3PQUA 4Z3TA 1MPFA 4JFBA 3QRCA 5AFUK 1GFQA 1QJPA 3BS0A 4RL9A 5H2FO 5G38A 2R4LA 3AA6A 5DL6A 5G26A 1IZNB 2KZ7A 3AA7A 3RBHA 1HXUA 1T16A 4RLCA 3NJTA 4F4BA 4BUMX 3UU2A 1H6S1 2YPVA 3VZUX 4UB6O 3T24A 3AA0B 5IYUA 5DL5A 3K19A 1Q9FA 3HOEA 1OSMA 1PRNA 2YNKA 1ZHZA 4GF4A 1PHOA 4C4VA 1GFOA 4AYMC 4PUXA 3NSGA 4AYID 4AYEC 3BRYA 3DWNA 3POQA 4AYDC 2ZLDA 3DA3A 2R4OA 4FMSA 2F1TA 5FVNA 3LK41 3AAAB 4G75A 4N59A 5GTHO 2J1NA 3DA4A 2FGRA 4C00A 4C69X 3UPGA 1MM4A 4D64A 4E1TA 4AYNA 2R8AA 4N75A 1GFMA 2ZFGA 4O49A 3AAEA 5ADXL 4GCQA 2Y0KA 1ZHWA 3SY7A 5D5DA 3AA1B 2W81C 2GE4A 3WI5A 3GP6A 4CTDA 1GFNA 1HXTA 1YS5A 3DZMA 3LK2A 1S5LO 4KRAA 1THQA 2JMMA 5G39A 4O3YA 2OMFA 4XNKA 4G76A 3SYBA 4AKRA 2M06A 1BT9A 1OPFA 3A2SX 1QJ8A 2WVPA 4O3WA 1E54A 2KXPB 2Y7SA 3C5OA 3VY9X 3T0SA 1IZNA 3WU2O 2WJRA 3HW9A 3JTYA 3POUA 4RJWA 4GCSA 5G3AA 4O4UA 5TISO 2N2LA 3SZVA 3VZTX 2R4NA 7PRNA 3AA0A 4FOZA 4PR7A 3LK3B 2WJQA 2K0LA 4RLBA 4FUVA 2AXTO 3VE1A 1BXWA 4JCHA 5KAIO 5PRNA 5T5FA 1GFPA 1ZHTA 2XTRA 2XE1A 4AUIA 3VY8X 5DL8A 3AA6B 1MM5A 3EMNX 3AA7B 2KZ7B 2W80C 2M07A 2XTQA 3FYXA 4GHBA 4K3BA 4FSPA 5AFUL 4IL6O 2KC0A 3AAAA 2KDYA 2XE2A 2Y2XA 3O0EA 2F1CX 3PF1A 2XE3A 4FSOA 4O3ZA 4AKMA 4D65A 5ADXK 2N2MA 3KZIO 2QTKA 3PQSA 4RJXA 3G7GA 2O4VA 3KVDD 4N74A 4KR8A 4QQ1A 4FZLA 3LK42 2LFUA 4UB8O 3SYSA 5EE2A 3PORA 4FESA 2R4PA 4C4VB 5KAFO 4FT6A 2PORA 5GV0A 3AA1A 3HWBA 1BH3A 2F1VA 4B61A 3A0HO 2X27X 5B5EO 3PGUA 1HXXA
chains in the Genus database with same CATH topology

1G90A 4LSIA 3VZWX 4E1SA 1P4TA 4U9CA 3TZGA 2XMXA 5JDPA 3VE2A 4GCPA 4LSHA 3SY9A 2XG6A 2MNHA 2Y0HA 6PRNA 3T20A 1ORMA 3POXA 2MHLA 2KXPA 4AFKA 1QJ9A 2ODJA 2K4TA 3AAEB 4N58A 4AZLA 8PRNA 4LSEA 4LSFA 2ERVA 5DL7A 2J4UP 2FGQX 2XE5A 4O4XA 3LK2B 4FZNA 1ZHXA 3V8UA 1ZHYA 1Q9GA 2LHFA 3QRAA 2Y0LA 3LK3A 3SZDA 4D5UA 4O3XB 3PRNA 4FRTA 4FZMA 4XNLA 4AKRB 3HOLA 4FRXA 4KR4A 3UAQA 2PRNA 3PQUA 4Z3TA 1MPFA 4JFBA 3QRCA 5AFUK 1GFQA 1QJPA 4RL9A 5G26A 3AA6A 5DL6A 3RBHA 1IZNB 2KZ7A 3AA7A 1HXUA 4RLCA 4F4BA 4BUMX 3UU2A 1H6S1 2YPVA 3VZUX 3T24A 3AA0B 5IYUA 5DL5A 3K19A 1Q9FA 3HOEA 1OSMA 1PRNA 2YNKA 1ZHZA 4GF4A 1PHOA 1GFOA 4AYMC 4PUXA 3NSGA 4AYID 4AYEC 4AYDC 3POQA 2ZLDA 3DA3A 4FMSA 5FVNA 2F1TA 3LK41 3AAAB 4G75A 4N59A 2J1NA 3DA4A 2FGRA 4C69X 3UPGA 1MM4A 4D64A 4E1TA 4AYNA 1GFMA 2ZFGA 4O49A 3AAEA 5ADXL 4GCQA 2Y0KA 1ZHWA 3SY7A 5D5DA 3AA1B 2W81C 2GE4A 3WI5A 3GP6A 1GFNA 1HXTA 1YS5A 3LK2A 4KRAA 1THQA 2JMMA 4O3YA 2OMFA 4XNKA 4G76A 3SYBA 4AKRA 2M06A 1BT9A 1OPFA 3A2SX 1QJ8A 4O3WA 1E54A 2KXPB 2Y7SA 3C5OA 3VY9X 3T0SA 1IZNA 3HW9A 3POUA 3JTYA 4RJWA 4GCSA 3VZTX 4O4UA 2N2LA 3SZVA 3AA0A 4FOZA 3LK3B 2K0LA 4RLBA 4FUVA 3VE1A 1BXWA 4JCHA 5PRNA 5T5FA 1GFPA 1ZHTA 2XTRA 2XE1A 4AUIA 3VY8X 5DL8A 3AA6B 1MM5A 3EMNX 3AA7B 2KZ7B 2W80C 2M07A 2XTQA 3FYXA 4GHBA 5AFUL 4FSPA 2KC0A 3AAAA 2KDYA 2XE2A 2Y2XA 3O0EA 4FSOA 4O3ZA 2XE3A 4AKMA 5ADXK 4D65A 2N2MA 2QTKA 3PQSA 4RJXA 3G7GA 2O4VA 3KVDD 4QQ1A 4KR8A 4FZLA 3LK42 2LFUA 3SYSA 7PRNA 5EE2A 3PORA 4FESA 4FT6A 2PORA 5GV0A 3AA1A 3HWBA 1BH3A 2F1VA 4B61A 3WI4A 2X27X 1HXXA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1G90 A;  2K0L A;  1P4T A;  1BXW A;  4RLC A;  2GE4 A;  3GP6 A;  2MNH A;  1ORM A;  2MHL A;  1MM5 A;  1Q9F A;  1QJ9 A;  1THQ A;  2JMM A;  2M07 A;  2ERV A;  2M06 A;  4PUX A;  1QJ8 A;  2N2M A;  1Q9G A;  2LHF A;  3C5O A;  2X27 X;  3QRA A;  3G7G A;  2F1T A;  2F1V A;  3QRC A;  2N2L A;  1MM4 A;  1QJP A; 
#chains in the Genus database with same CATH topology
 1G90 A;  4LSI A;  3WI4 A;  3VZW X;  4E1S A;  1P4T A;  4U9C A;  3TZG A;  2XMX A;  3PGR A;  3JCU O;  2IWV A;  5GTI O;  5JDP A;  3VE2 A;  4GCP A;  2R89 A;  4LSH A;  2X9K A;  3DWO X;  3SY9 A;  2XG6 A;  2MNH A;  2Y0H A;  6PRN A;  4K3C A;  3T20 A;  1ORM A;  3POX A;  2MHL A;  2KXP A;  4PJ0 O;  1QJ9 A;  2ODJ A;  2K4T A;  3AAE B;  4N58 A;  4AFK A;  4AZL A;  8PRN A;  4LSE A;  2JQY A;  3A0B O;  4LSF A;  2ERV A;  1T1L A;  5DL7 A;  2J4U P;  2FGQ X;  2XE5 A;  4O4X A;  3LK2 B;  3PGS A;  4FZN A;  1ZHX A;  3V8U A;  1ZHY A;  1Q9G A;  2LHF A;  3QRA A;  2Y0L A;  3LK3 A;  3SZD A;  4D5U A;  4O3X B;  3PRN A;  4FQE A;  4FRT A;  4FZM A;  4XNL A;  5E79 O;  3BRZ A;  4AKR B;  5B66 O;  3HOL A;  4FRX A;  4KR4 A;  3UAQ A;  2IWW A;  2PRN A;  2R88 A;  3PQU A;  4Z3T A;  1MPF A;  4JFB A;  3QRC A;  5AFU K;  1GFQ A;  1QJP A;  3BS0 A;  4RL9 A;  5H2F O;  5G38 A;  2R4L A;  3AA6 A;  5DL6 A;  5G26 A;  1IZN B;  2KZ7 A;  3AA7 A;  3RBH A;  1HXU A;  1T16 A;  4RLC A;  3NJT A;  4F4B A;  4BUM X;  3UU2 A;  1H6S 1;  2YPV A;  3VZU X;  4UB6 O;  3T24 A;  3AA0 B;  5IYU A;  5DL5 A;  3K19 A;  1Q9F A;  3HOE A;  1OSM A;  1PRN A;  2YNK A;  1ZHZ A;  4GF4 A;  1PHO A;  4C4V A;  1GFO A;  4AYM C;  4PUX A;  3NSG A;  4AYI D;  4AYE C;  3BRY A;  3DWN A;  3POQ A;  4AYD C;  2ZLD A;  3DA3 A;  2R4O A;  4FMS A;  2F1T A;  5FVN A;  3LK4 1;  3AAA B;  4G75 A;  4N59 A;  5GTH O;  2J1N A;  3DA4 A;  2FGR A;  4C00 A;  4C69 X;  3UPG A;  1MM4 A;  4D64 A;  4E1T A;  4AYN A;  2R8A A;  4N75 A;  1GFM A;  2ZFG A;  4O49 A;  3AAE A;  5ADX L;  4GCQ A;  2Y0K A;  1ZHW A;  3SY7 A;  5D5D A;  3AA1 B;  2W81 C;  2GE4 A;  3WI5 A;  3GP6 A;  4CTD A;  1GFN A;  1HXT A;  1YS5 A;  3DZM A;  3LK2 A;  1S5L O;  4KRA A;  1THQ A;  2JMM A;  5G39 A;  4O3Y A;  2OMF A;  4XNK A;  4G76 A;  3SYB A;  4AKR A;  2M06 A;  1BT9 A;  1OPF A;  3A2S X;  1QJ8 A;  2WVP A;  4O3W A;  1E54 A;  2KXP B;  2Y7S A;  3C5O A;  3VY9 X;  3T0S A;  1IZN A;  3WU2 O;  2WJR A;  3HW9 A;  3JTY A;  3POU A;  4RJW A;  4GCS A;  5G3A A;  4O4U A;  5TIS O;  2N2L A;  3SZV A;  3VZT X;  2R4N A;  7PRN A;  3AA0 A;  4FOZ A;  4PR7 A;  3LK3 B;  2WJQ A;  2K0L A;  4RLB A;  4FUV A;  2AXT O;  3VE1 A;  1BXW A;  4JCH A;  5KAI O;  5PRN A;  5T5F A;  1GFP A;  1ZHT A;  2XTR A;  2XE1 A;  4AUI A;  3VY8 X;  5DL8 A;  3AA6 B;  1MM5 A;  3EMN X;  3AA7 B;  2KZ7 B;  2W80 C;  2M07 A;  2XTQ A;  3FYX A;  4GHB A;  4K3B A;  4FSP A;  5AFU L;  4IL6 O;  2KC0 A;  3AAA A;  2KDY A;  2XE2 A;  2Y2X A;  3O0E A;  2F1C X;  3PF1 A;  2XE3 A;  4FSO A;  4O3Z A;  4AKM A;  4D65 A;  5ADX K;  2N2M A;  3KZI O;  2QTK A;  3PQS A;  4RJX A;  3G7G A;  2O4V A;  3KVD D;  4N74 A;  4KR8 A;  4QQ1 A;  4FZL A;  3LK4 2;  2LFU A;  4UB8 O;  3SYS A;  5EE2 A;  3POR A;  4FES A;  2R4P A;  4C4V B;  5KAF O;  4FT6 A;  2POR A;  5GV0 A;  3AA1 A;  3HWB A;  1BH3 A;  2F1V A;  4B61 A;  3A0H O;  2X27 X;  5B5E O;  3PGU A;  1HXX A; 
#chains in the Genus database with same CATH homology
 1G90 A;  4LSI A;  3VZW X;  4E1S A;  1P4T A;  4U9C A;  3TZG A;  2XMX A;  5JDP A;  3VE2 A;  4GCP A;  4LSH A;  3SY9 A;  2XG6 A;  2MNH A;  2Y0H A;  6PRN A;  3T20 A;  1ORM A;  3POX A;  2MHL A;  2KXP A;  4AFK A;  1QJ9 A;  2ODJ A;  2K4T A;  3AAE B;  4N58 A;  4AZL A;  8PRN A;  4LSE A;  4LSF A;  2ERV A;  5DL7 A;  2J4U P;  2FGQ X;  2XE5 A;  4O4X A;  3LK2 B;  4FZN A;  1ZHX A;  3V8U A;  1ZHY A;  1Q9G A;  2LHF A;  3QRA A;  2Y0L A;  3LK3 A;  3SZD A;  4D5U A;  4O3X B;  3PRN A;  4FRT A;  4FZM A;  4XNL A;  4AKR B;  3HOL A;  4FRX A;  4KR4 A;  3UAQ A;  2PRN A;  3PQU A;  4Z3T A;  1MPF A;  4JFB A;  3QRC A;  5AFU K;  1GFQ A;  1QJP A;  4RL9 A;  5G26 A;  3AA6 A;  5DL6 A;  3RBH A;  1IZN B;  2KZ7 A;  3AA7 A;  1HXU A;  4RLC A;  4F4B A;  4BUM X;  3UU2 A;  1H6S 1;  2YPV A;  3VZU X;  3T24 A;  3AA0 B;  5IYU A;  5DL5 A;  3K19 A;  1Q9F A;  3HOE A;  1OSM A;  1PRN A;  2YNK A;  1ZHZ A;  4GF4 A;  1PHO A;  1GFO A;  4AYM C;  4PUX A;  3NSG A;  4AYI D;  4AYE C;  4AYD C;  3POQ A;  2ZLD A;  3DA3 A;  4FMS A;  5FVN A;  2F1T A;  3LK4 1;  3AAA B;  4G75 A;  4N59 A;  2J1N A;  3DA4 A;  2FGR A;  4C69 X;  3UPG A;  1MM4 A;  4D64 A;  4E1T A;  4AYN A;  1GFM A;  2ZFG A;  4O49 A;  3AAE A;  5ADX L;  4GCQ A;  2Y0K A;  1ZHW A;  3SY7 A;  5D5D A;  3AA1 B;  2W81 C;  2GE4 A;  3WI5 A;  3GP6 A;  1GFN A;  1HXT A;  1YS5 A;  3LK2 A;  4KRA A;  1THQ A;  2JMM A;  4O3Y A;  2OMF A;  4XNK A;  4G76 A;  3SYB A;  4AKR A;  2M06 A;  1BT9 A;  1OPF A;  3A2S X;  1QJ8 A;  4O3W A;  1E54 A;  2KXP B;  2Y7S A;  3C5O A;  3VY9 X;  3T0S A;  1IZN A;  3HW9 A;  3POU A;  3JTY A;  4RJW A;  4GCS A;  3VZT X;  4O4U A;  2N2L A;  3SZV A;  3AA0 A;  4FOZ A;  3LK3 B;  2K0L A;  4RLB A;  4FUV A;  3VE1 A;  1BXW A;  4JCH A;  5PRN A;  5T5F A;  1GFP A;  1ZHT A;  2XTR A;  2XE1 A;  4AUI A;  3VY8 X;  5DL8 A;  3AA6 B;  1MM5 A;  3EMN X;  3AA7 B;  2KZ7 B;  2W80 C;  2M07 A;  2XTQ A;  3FYX A;  4GHB A;  5AFU L;  4FSP A;  2KC0 A;  3AAA A;  2KDY A;  2XE2 A;  2Y2X A;  3O0E A;  4FSO A;  4O3Z A;  2XE3 A;  4AKM A;  5ADX K;  4D65 A;  2N2M A;  2QTK A;  3PQS A;  4RJX A;  3G7G A;  2O4V A;  3KVD D;  4QQ1 A;  4KR8 A;  4FZL A;  3LK4 2;  2LFU A;  3SYS A;  7PRN A;  5EE2 A;  3POR A;  4FES A;  4FT6 A;  2POR A;  5GV0 A;  3AA1 A;  3HWB A;  1BH3 A;  2F1V A;  4B61 A;  3WI4 A;  2X27 X;  1HXX A;

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similar chains in the Genus database (?% sequence similarity)

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#similar chains, but unknotted
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2M06A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN