2M07A

Nmr structure of ompx in dpc micelles
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
148
structure length
148
Chain Sequence
ATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (3-13)TI1 (33-36)TIV2 (56-59)S7 (122-130)S2 (21-30)S6 (103-115)S8 (137-147)S3 (38-47)S4 (60-71)S5 (78-90)Updating...
connected with : NaN
molecule tags Membrane protein
source organism Escherichia coli
publication title Optimized phospholipid bilayer nanodiscs facilitate high-resolution structure determination of membrane proteins.
pubmed doi rcsb
molecule keywords Outer membrane protein X
total genus 18
structure length 148
sequence length 148
ec nomenclature
pdb deposition date 2012-10-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 2m07A00
2GE4A 2MHLA 1ORMA 2N2MA 3C5OA 2F1VA 1MM4A 2M06A 1BXWA 2X27X 2K0LA 1QJ9A 1Q9FA 3G7GA 4PUXA 3QRCA 1P4TA 1Q9GA 2F1TA 2ERVA 2N2LA 4RLCA 2LHFA 1QJPA 2JMMA 1G90A 3GP6A 3QRAA 2MNHA 1THQA 2M07A 1MM5A 1QJ8A
chains in the Genus database with same CATH superfamily
4UB8O 4XNLA 3AAAA 4C00A 4FRXA 2N2MA 5B5EO 3VZTX 1YS5A 5G3AA 3HW9A 3AA7B 3HWBA 3SZDA 1ZHYA 3PRNA 3A2SX 2XMXA 3AA7A 5IYUA 2Y2XA 2X27X 1GFNA 3VZWX 2PRNA 1QJ9A 2JQYA 2R8AA 3V8UA 4G75A 3DA4A 3BRYA 5AFUL 4RJWA 4PR7A 3T0SA 3PGSA 1ZHTA 2FGQX 2N2LA 3NJTA 5PRNA 4LSHA 5DL8A 3SZVA 3VE2A 5G38A 3JTYA 1IZNB 5D5DA 2XE5A 3T24A 1IZNA 2JMMA 1G90A 4AYID 3GP6A 4FZMA 2X9KA 2Y0KA 4RJXA 2ZFGA 2MNHA 3LK41 3SY7A 1THQA 4E1SA 3WI4A 2M07A 4FRTA 2GE4A 5DL6A 1MM5A 3DWOX 2F1VA 2XE1A 4LSFA 2O4VA 2R89A 4U9CA 4D5UA 2M06A 2ZLDA 4FESA 5H2FO 4AKMA 2J4UP 1ZHZA 2ODJA 2KDYA 3PF1A 1Q9FA 2K4TA 3G7GA 4QQ1A 4AFKA 4GCQA 5ADXL 2WVPA 4PUXA 3T20A 3VY8X 4FMSA 3QRCA 1P4TA 1Q9GA 4O3ZA 4N74A 4AYNA 5DL7A 2ERVA 5ADXK 4PJ0O 4UB6O 5KAFO 5AFUK 4E1TA 3LK2B 3PGUA 3VY9X 4FZNA 3A0BO 3SYBA 4AZLA 4O3XB 2F1CX 2WJRA 5GTIO 2R4PA 3LK2A 3UAQA 3DZMA 3PQUA 4LSEA 4AYMC 3UPGA 2XE3A 5GTHO 4K3BA 3VZUX 1BT9A 3O0EA 1OSMA 1HXTA 2MHLA 3AA6B 4GCSA 5EE2A 4N58A 5G39A 3FYXA 3EMNX 3AA6A 4N59A 4CTDA 3A0HO 5GV0A 3KZIO 3PGRA 1BXWA 3BS0A 2OMFA 1E54A 1GFMA 2K0LA 2XE2A 2XTQA 2W81C 4GCPA 4KR4A 2Y7SA 3LK42 3LK3B 4IL6O 2IWWA 4FZLA 3JCUO 4O49A 4AUIA 3LK3A 3WU2O 3AAEB 2F1TA 3WI5A 2R4LA 1PHOA 4FQEA 4RLCA 4XNKA 2PORA 4B61A 3AAEA 2LFUA 4GHBA 1QJPA 4G76A 4RLBA 2KXPB 3NSGA 5E79O 4O4XA 5TISO 8PRNA 4JFBA 2KXPA 1GFPA 4FT6A 4FSPA 3DA3A 3QRAA 2YPVA 4N75A 1GFQA 2KZ7B 1OPFA 3PQSA 5DL5A 4AKRB 1T16A 1T1LA 1QJ8A 2QTKA 4C4VB 1ORMA 2KZ7A 4AKRA 4D64A 1PRNA 3C5OA 4KRAA 4C4VA 2Y0LA 5FVNA 3VE1A 1MM4A 3RBHA 2J1NA 1ZHXA 3DWNA 1HXXA 4BUMX 3BRZA 4AYEC 1HXUA 3AA1B 4K3CA 4O3WA 4FSOA 1S5LO 1H6S1 2IWVA 2R4OA 2XG6A 3HOLA 3AA1A 3KVDD 1GFOA 4RL9A 4FOZA 5T5FA 5KAIO 3SYSA 2R4NA 4O4UA 7PRNA 3POQA 4O3YA 2AXTO 1ZHWA 2R88A 3UU2A 1MPFA 2Y0HA 3AA0B 4GF4A 3PORA 2LHFA 3K19A 4LSIA 5B66O 4D65A 3AA0A 4F4BA 4Z3TA 3SY9A 2W80C 2KC0A 4KR8A 5G26A 4AYDC 4C69X 4FUVA 1BH3A 3POXA 2WJQA 3TZGA 3POUA 5JDPA 4JCHA 2XTRA 2YNKA 3AAAB 6PRNA 3HOEA 2FGRA
chains in the Genus database with same CATH topology
4XNLA 3AAAA 4FRXA 2N2MA 3VZTX 1YS5A 3HW9A 3AA7B 3HWBA 3SZDA 1ZHYA 3PRNA 3A2SX 2XMXA 3AA7A 5IYUA 2Y2XA 2X27X 1GFNA 3VZWX 2PRNA 1QJ9A 3V8UA 4G75A 3DA4A 5AFUL 4RJWA 3T0SA 1ZHTA 2FGQX 2N2LA 5PRNA 4LSHA 5DL8A 3SZVA 3VE2A 3JTYA 1IZNB 5D5DA 2XE5A 3T24A 1IZNA 2JMMA 1G90A 4AYID 3GP6A 4FZMA 2Y0KA 4RJXA 2ZFGA 2MNHA 3LK41 3SY7A 1THQA 4E1SA 3WI4A 2M07A 4FRTA 2GE4A 5DL6A 1MM5A 2F1VA 2XE1A 4LSFA 2O4VA 4U9CA 4D5UA 2M06A 2ZLDA 4FESA 4AKMA 2J4UP 1ZHZA 2ODJA 2KDYA 4AFKA 1Q9FA 2K4TA 3G7GA 4QQ1A 5ADXL 4GCQA 4PUXA 3T20A 3VY8X 4FMSA 3QRCA 1P4TA 1Q9GA 4O3ZA 4AYNA 5ADXK 5DL7A 2ERVA 5AFUK 4E1TA 3LK2B 3VY9X 4FZNA 3SYBA 4AZLA 4O3XB 3UAQA 3LK2A 3UPGA 3PQUA 4LSEA 4AYMC 2XE3A 3VZUX 1BT9A 3O0EA 1OSMA 1HXTA 2MHLA 3AA6B 4GCSA 5EE2A 4N58A 3FYXA 3EMNX 3AA6A 4N59A 5GV0A 1BXWA 2OMFA 1E54A 2XTQA 1GFMA 2XE2A 2K0LA 2W81C 4GCPA 4KR4A 2Y7SA 3LK42 3LK3B 4FZLA 4O49A 4AUIA 3LK3A 3AAEB 2F1TA 3WI5A 1PHOA 4XNKA 4RLCA 2PORA 4B61A 3AAEA 2LFUA 4GHBA 1QJPA 4G76A 4RLBA 2KXPB 3NSGA 4O4XA 8PRNA 4JFBA 2KXPA 1GFPA 4FT6A 4FSPA 3DA3A 3QRAA 2YPVA 1GFQA 2KZ7B 1OPFA 3PQSA 5DL5A 4AKRB 1QJ8A 2QTKA 1ORMA 2KZ7A 4AKRA 4D64A 1PRNA 3C5OA 4KRAA 2Y0LA 5FVNA 3VE1A 1MM4A 3RBHA 2J1NA 1ZHXA 4BUMX 1HXXA 4AYEC 1HXUA 3AA1B 4O3WA 4FSOA 3HOLA 1H6S1 2XG6A 3AA1A 3KVDD 1GFOA 4RL9A 4FOZA 5T5FA 3SYSA 4O4UA 7PRNA 3POQA 4O3YA 1ZHWA 3UU2A 1MPFA 2Y0HA 3AA0B 4GF4A 3PORA 2LHFA 3K19A 4LSIA 4D65A 3AA0A 4F4BA 4Z3TA 3SY9A 2W80C 2KC0A 4KR8A 5G26A 4AYDC 4C69X 4FUVA 1BH3A 3POXA 3TZGA 5JDPA 3POUA 4JCHA 2XTRA 2YNKA 3AAAB 6PRNA 3HOEA 2FGRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GE4 A;  2MHL A;  1ORM A;  2N2M A;  3C5O A;  2F1V A;  1MM4 A;  2M06 A;  1BXW A;  2X27 X;  2K0L A;  1QJ9 A;  1Q9F A;  3G7G A;  4PUX A;  3QRC A;  1P4T A;  1Q9G A;  2F1T A;  2ERV A;  2N2L A;  4RLC A;  2LHF A;  1QJP A;  2JMM A;  1G90 A;  3GP6 A;  3QRA A;  2MNH A;  1THQ A;  2M07 A;  1MM5 A;  1QJ8 A; 
#chains in the Genus database with same CATH topology
 4UB8 O;  4XNL A;  3AAA A;  4C00 A;  4FRX A;  2N2M A;  5B5E O;  3VZT X;  1YS5 A;  5G3A A;  3HW9 A;  3AA7 B;  3HWB A;  3SZD A;  1ZHY A;  3PRN A;  3A2S X;  2XMX A;  3AA7 A;  5IYU A;  2Y2X A;  2X27 X;  1GFN A;  3VZW X;  2PRN A;  1QJ9 A;  2JQY A;  2R8A A;  3V8U A;  4G75 A;  3DA4 A;  3BRY A;  5AFU L;  4RJW A;  4PR7 A;  3T0S A;  3PGS A;  1ZHT A;  2FGQ X;  2N2L A;  3NJT A;  5PRN A;  4LSH A;  5DL8 A;  3SZV A;  3VE2 A;  5G38 A;  3JTY A;  1IZN B;  5D5D A;  2XE5 A;  3T24 A;  1IZN A;  2JMM A;  1G90 A;  4AYI D;  3GP6 A;  4FZM A;  2X9K A;  2Y0K A;  4RJX A;  2ZFG A;  2MNH A;  3LK4 1;  3SY7 A;  1THQ A;  4E1S A;  3WI4 A;  2M07 A;  4FRT A;  2GE4 A;  5DL6 A;  1MM5 A;  3DWO X;  2F1V A;  2XE1 A;  4LSF A;  2O4V A;  2R89 A;  4U9C A;  4D5U A;  2M06 A;  2ZLD A;  4FES A;  5H2F O;  4AKM A;  2J4U P;  1ZHZ A;  2ODJ A;  2KDY A;  3PF1 A;  1Q9F A;  2K4T A;  3G7G A;  4QQ1 A;  4AFK A;  4GCQ A;  5ADX L;  2WVP A;  4PUX A;  3T20 A;  3VY8 X;  4FMS A;  3QRC A;  1P4T A;  1Q9G A;  4O3Z A;  4N74 A;  4AYN A;  5DL7 A;  2ERV A;  5ADX K;  4PJ0 O;  4UB6 O;  5KAF O;  5AFU K;  4E1T A;  3LK2 B;  3PGU A;  3VY9 X;  4FZN A;  3A0B O;  3SYB A;  4AZL A;  4O3X B;  2F1C X;  2WJR A;  5GTI O;  2R4P A;  3LK2 A;  3UAQ A;  3DZM A;  3PQU A;  4LSE A;  4AYM C;  3UPG A;  2XE3 A;  5GTH O;  4K3B A;  3VZU X;  1BT9 A;  3O0E A;  1OSM A;  1HXT A;  2MHL A;  3AA6 B;  4GCS A;  5EE2 A;  4N58 A;  5G39 A;  3FYX A;  3EMN X;  3AA6 A;  4N59 A;  4CTD A;  3A0H O;  5GV0 A;  3KZI O;  3PGR A;  1BXW A;  3BS0 A;  2OMF A;  1E54 A;  1GFM A;  2K0L A;  2XE2 A;  2XTQ A;  2W81 C;  4GCP A;  4KR4 A;  2Y7S A;  3LK4 2;  3LK3 B;  4IL6 O;  2IWW A;  4FZL A;  3JCU O;  4O49 A;  4AUI A;  3LK3 A;  3WU2 O;  3AAE B;  2F1T A;  3WI5 A;  2R4L A;  1PHO A;  4FQE A;  4RLC A;  4XNK A;  2POR A;  4B61 A;  3AAE A;  2LFU A;  4GHB A;  1QJP A;  4G76 A;  4RLB A;  2KXP B;  3NSG A;  5E79 O;  4O4X A;  5TIS O;  8PRN A;  4JFB A;  2KXP A;  1GFP A;  4FT6 A;  4FSP A;  3DA3 A;  3QRA A;  2YPV A;  4N75 A;  1GFQ A;  2KZ7 B;  1OPF A;  3PQS A;  5DL5 A;  4AKR B;  1T16 A;  1T1L A;  1QJ8 A;  2QTK A;  4C4V B;  1ORM A;  2KZ7 A;  4AKR A;  4D64 A;  1PRN A;  3C5O A;  4KRA A;  4C4V A;  2Y0L A;  5FVN A;  3VE1 A;  1MM4 A;  3RBH A;  2J1N A;  1ZHX A;  3DWN A;  1HXX A;  4BUM X;  3BRZ A;  4AYE C;  1HXU A;  3AA1 B;  4K3C A;  4O3W A;  4FSO A;  1S5L O;  1H6S 1;  2IWV A;  2R4O A;  2XG6 A;  3HOL A;  3AA1 A;  3KVD D;  1GFO A;  4RL9 A;  4FOZ A;  5T5F A;  5KAI O;  3SYS A;  2R4N A;  4O4U A;  7PRN A;  3POQ A;  4O3Y A;  2AXT O;  1ZHW A;  2R88 A;  3UU2 A;  1MPF A;  2Y0H A;  3AA0 B;  4GF4 A;  3POR A;  2LHF A;  3K19 A;  4LSI A;  5B66 O;  4D65 A;  3AA0 A;  4F4B A;  4Z3T A;  3SY9 A;  2W80 C;  2KC0 A;  4KR8 A;  5G26 A;  4AYD C;  4C69 X;  4FUV A;  1BH3 A;  3POX A;  2WJQ A;  3TZG A;  3POU A;  5JDP A;  4JCH A;  2XTR A;  2YNK A;  3AAA B;  6PRN A;  3HOE A;  2FGR A; 
#chains in the Genus database with same CATH homology
 4XNL A;  3AAA A;  4FRX A;  2N2M A;  3VZT X;  1YS5 A;  3HW9 A;  3AA7 B;  3HWB A;  3SZD A;  1ZHY A;  3PRN A;  3A2S X;  2XMX A;  3AA7 A;  5IYU A;  2Y2X A;  2X27 X;  1GFN A;  3VZW X;  2PRN A;  1QJ9 A;  3V8U A;  4G75 A;  3DA4 A;  5AFU L;  4RJW A;  3T0S A;  1ZHT A;  2FGQ X;  2N2L A;  5PRN A;  4LSH A;  5DL8 A;  3SZV A;  3VE2 A;  3JTY A;  1IZN B;  5D5D A;  2XE5 A;  3T24 A;  1IZN A;  2JMM A;  1G90 A;  4AYI D;  3GP6 A;  4FZM A;  2Y0K A;  4RJX A;  2ZFG A;  2MNH A;  3LK4 1;  3SY7 A;  1THQ A;  4E1S A;  3WI4 A;  2M07 A;  4FRT A;  2GE4 A;  5DL6 A;  1MM5 A;  2F1V A;  2XE1 A;  4LSF A;  2O4V A;  4U9C A;  4D5U A;  2M06 A;  2ZLD A;  4FES A;  4AKM A;  2J4U P;  1ZHZ A;  2ODJ A;  2KDY A;  4AFK A;  1Q9F A;  2K4T A;  3G7G A;  4QQ1 A;  5ADX L;  4GCQ A;  4PUX A;  3T20 A;  3VY8 X;  4FMS A;  3QRC A;  1P4T A;  1Q9G A;  4O3Z A;  4AYN A;  5ADX K;  5DL7 A;  2ERV A;  5AFU K;  4E1T A;  3LK2 B;  3VY9 X;  4FZN A;  3SYB A;  4AZL A;  4O3X B;  3UAQ A;  3LK2 A;  3UPG A;  3PQU A;  4LSE A;  4AYM C;  2XE3 A;  3VZU X;  1BT9 A;  3O0E A;  1OSM A;  1HXT A;  2MHL A;  3AA6 B;  4GCS A;  5EE2 A;  4N58 A;  3FYX A;  3EMN X;  3AA6 A;  4N59 A;  5GV0 A;  1BXW A;  2OMF A;  1E54 A;  2XTQ A;  1GFM A;  2XE2 A;  2K0L A;  2W81 C;  4GCP A;  4KR4 A;  2Y7S A;  3LK4 2;  3LK3 B;  4FZL A;  4O49 A;  4AUI A;  3LK3 A;  3AAE B;  2F1T A;  3WI5 A;  1PHO A;  4XNK A;  4RLC A;  2POR A;  4B61 A;  3AAE A;  2LFU A;  4GHB A;  1QJP A;  4G76 A;  4RLB A;  2KXP B;  3NSG A;  4O4X A;  8PRN A;  4JFB A;  2KXP A;  1GFP A;  4FT6 A;  4FSP A;  3DA3 A;  3QRA A;  2YPV A;  1GFQ A;  2KZ7 B;  1OPF A;  3PQS A;  5DL5 A;  4AKR B;  1QJ8 A;  2QTK A;  1ORM A;  2KZ7 A;  4AKR A;  4D64 A;  1PRN A;  3C5O A;  4KRA A;  2Y0L A;  5FVN A;  3VE1 A;  1MM4 A;  3RBH A;  2J1N A;  1ZHX A;  4BUM X;  1HXX A;  4AYE C;  1HXU A;  3AA1 B;  4O3W A;  4FSO A;  3HOL A;  1H6S 1;  2XG6 A;  3AA1 A;  3KVD D;  1GFO A;  4RL9 A;  4FOZ A;  5T5F A;  3SYS A;  4O4U A;  7PRN A;  3POQ A;  4O3Y A;  1ZHW A;  3UU2 A;  1MPF A;  2Y0H A;  3AA0 B;  4GF4 A;  3POR A;  2LHF A;  3K19 A;  4LSI A;  4D65 A;  3AA0 A;  4F4B A;  4Z3T A;  3SY9 A;  2W80 C;  2KC0 A;  4KR8 A;  5G26 A;  4AYD C;  4C69 X;  4FUV A;  1BH3 A;  3POX A;  3TZG A;  5JDP A;  3POU A;  4JCH A;  2XTR A;  2YNK A;  3AAA B;  6PRN A;  3HOE A;  2FGR A; 
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