2R4N | Genus

Total Genus 103

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	103
sequence length	421
structure length	421
Chain Sequence	AGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRAPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKTAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
source organism	Escherichia coli
publication title	Transmembrane passage of hydrophobic compounds through a protein channel wall pubmed doi rcsb
molecule keywords	Long-chain fatty acid transport protein
total genus	103
structure length	421
sequence length	421
chains with identical sequence	B
ec nomenclature
pdb deposition date	2007-08-31

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.60	Mainly Beta	Beta Barrel	Porin	Outer membrane protein transport protein (OMPP1/FadL/TodX)	2r4nA00

3BRYA 2R4LA 3DWNA 2R4NA 1T16A 3BRZA 3BS0A 2R88A 2R4PA 3DWOX 3PGSA 3PGRA 1T1LA 3PGUA 2R8AA 2R89A 3PF1A 2R4OA
chains in the Genus database with same CATH superfamily

4O3ZA 4G76A 3PQUA 2JMMA 4AKMA 4RL9A 3A0BO 3VZUX 1H6S1 3JCUO 2LFUA 3AA6A 3AAEB 3DWOX 1GFOA 3O0EA 5ADXK 4B61A 4RLCA 3POQA 2IWVA 2W81C 3AA1A 3TZGA 4AKRA 3UU2A 4FQEA 3SY7A 4K3CA 5AFUL 1G90A 3VE1A 1MPFA 1HXUA 3POUA 4O3YA 3A2SX 8PRNA 1OPFA 3UPGA 4AYEC 4O3XB 4N75A 3QRAA 4JFBA 2K0LA 5B5EO 3BS0A 4KRAA 4BUMX 1ZHXA 4UB8O 3SZDA 1QJ9A 2MHLA 1BXWA 2Y2XA 3AAEA 2Y7SA 4LSIA 2WVPA 3VZTX 1ZHZA 4FESA 5DL6A 3T20A 2ODJA 2X9KA 5KAFO 4Z3TA 2F1CX 2KC0A 3QRCA 2K4TA 4FRTA 2R88A 2Y0HA 4O4UA 3KZIO 4O4XA 5TISO 4CTDA 3AAAB 4AYNA 1GFNA 4KR8A 4C4VB 2KXPB 5G39A 2FGRA 4FT6A 2N2MA 1MM5A 1GFQA 1QJ8A 2W80C 4FMSA 2XMXA 4O49A 4AFKA 5D5DA 4AUIA 3WU2O 3SZVA 1ZHWA 2O4VA 3VZWX 3LK3B 3BRZA 2FGQX 4IL6O 4JCHA 3PORA 5T5FA 3VY9X 2QTKA 7PRNA 5IYUA 2AXTO 3SYBA 2N2LA 3WI5A 1THQA 3C5OA 2R4OA 3PQSA 3PRNA 2F1VA 4AYID 3DA4A 2X27X 3GP6A 1E54A 3UAQA 2WJQA 3FYXA 4FUVA 4KR4A 3HWBA 5B66O 1P4TA 3AAAA 3HW9A 4LSHA 4C4VA 2KXPA 3DWNA 4FZLA 2IWWA 5EE2A 4RLBA 3VY8X 4AYDC 5ADXL 2YNKA 4AYMC 1Q9GA 4GHBA 2PRNA 2J4UP 2XE3A 4G75A 3BRYA 2R4LA 4RJXA 2XE5A 3DZMA 3V8UA 2PORA 3LK3A 4N58A 5FVNA 4FZNA 4K3BA 2R4PA 4FSOA 1GFPA 3JTYA 4FSPA 2J1NA 1YS5A 2Y0LA 4FZMA 4GCQA 3T24A 5AFUK 5DL7A 4PUXA 4XNLA 2ERVA 2XE2A 3KVDD 3LK2B 4D65A 3NJTA 2OMFA 5GTHO 5DL8A 1BH3A 2WJRA 4LSFA 4N74A 5GTIO 4F4BA 2KDYA 5GV0A 1IZNB 1BT9A 3AA0B 2R4NA 5DL5A 3T0SA 2KZ7B 2XTQA 4FOZA 3HOLA 1T1LA 4GCPA 2R8AA 2R89A 4AZLA 3PF1A 3PGSA 4D5UA 1GFMA 4XNKA 4N59A 6PRNA 1ORMA 4QQ1A 4D64A 4GF4A 4LSEA 5G26A 5E79O 3AA7B 2M06A 3LK42 2Y0KA 3PGUA 2GE4A 3G7GA 3PGRA 4FRXA 1MM4A 4PR7A 3LK41 3LK2A 4U9CA 1OSMA 1PRNA 3AA6B 3VE2A 4C69X 3DA3A 1ZHYA 2ZFGA 1PHOA 1QJPA 3POXA 5H2FO 3WI4A 3AA1B 2M07A 1IZNA 2F1TA 3K19A 3SY9A 1ZHTA 4AKRB 1T16A 2LHFA 3AA0A 2MNHA 3HOEA 4O3WA 3SYSA 2KZ7A 4E1TA 1S5LO 3A0HO 2XE1A 3NSGA 2ZLDA 4UB6O 5KAIO 4GCSA 1Q9FA 2YPVA 4C00A 4E1SA 3RBHA 2JQYA 2XG6A 1HXXA 5PRNA 5G38A 1HXTA 3AA7A 4RJWA 3EMNX 4PJ0O 5G3AA 5JDPA 2XTRA
chains in the Genus database with same CATH topology

3BRYA 2R4LA 3DWNA 2R4NA 1T16A 3BRZA 3BS0A 2R88A 2R4PA 3DWOX 3PGSA 3PGRA 1T1LA 3PGUA 2R8AA 2R89A 3PF1A 2R4OA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3BRY A;  2R4L A;  3DWN A;  2R4N A;  1T16 A;  3BRZ A;  3BS0 A;  2R88 A;  2R4P A;  3DWO X;  3PGS A;  3PGR A;  1T1L A;  3PGU A;  2R8A A;  2R89 A;  3PF1 A;  2R4O A; 
#chains in the Genus database with same CATH topology
 4O3Z A;  4G76 A;  3PQU A;  2JMM A;  4AKM A;  4RL9 A;  3A0B O;  3VZU X;  1H6S 1;  3JCU O;  2LFU A;  3AA6 A;  3AAE B;  3DWO X;  1GFO A;  3O0E A;  5ADX K;  4B61 A;  4RLC A;  3POQ A;  2IWV A;  2W81 C;  3AA1 A;  3TZG A;  4AKR A;  3UU2 A;  4FQE A;  3SY7 A;  4K3C A;  5AFU L;  1G90 A;  3VE1 A;  1MPF A;  1HXU A;  3POU A;  4O3Y A;  3A2S X;  8PRN A;  1OPF A;  3UPG A;  4AYE C;  4O3X B;  4N75 A;  3QRA A;  4JFB A;  2K0L A;  5B5E O;  3BS0 A;  4KRA A;  4BUM X;  1ZHX A;  4UB8 O;  3SZD A;  1QJ9 A;  2MHL A;  1BXW A;  2Y2X A;  3AAE A;  2Y7S A;  4LSI A;  2WVP A;  3VZT X;  1ZHZ A;  4FES A;  5DL6 A;  3T20 A;  2ODJ A;  2X9K A;  5KAF O;  4Z3T A;  2F1C X;  2KC0 A;  3QRC A;  2K4T A;  4FRT A;  2R88 A;  2Y0H A;  4O4U A;  3KZI O;  4O4X A;  5TIS O;  4CTD A;  3AAA B;  4AYN A;  1GFN A;  4KR8 A;  4C4V B;  2KXP B;  5G39 A;  2FGR A;  4FT6 A;  2N2M A;  1MM5 A;  1GFQ A;  1QJ8 A;  2W80 C;  4FMS A;  2XMX A;  4O49 A;  4AFK A;  5D5D A;  4AUI A;  3WU2 O;  3SZV A;  1ZHW A;  2O4V A;  3VZW X;  3LK3 B;  3BRZ A;  2FGQ X;  4IL6 O;  4JCH A;  3POR A;  5T5F A;  3VY9 X;  2QTK A;  7PRN A;  5IYU A;  2AXT O;  3SYB A;  2N2L A;  3WI5 A;  1THQ A;  3C5O A;  2R4O A;  3PQS A;  3PRN A;  2F1V A;  4AYI D;  3DA4 A;  2X27 X;  3GP6 A;  1E54 A;  3UAQ A;  2WJQ A;  3FYX A;  4FUV A;  4KR4 A;  3HWB A;  5B66 O;  1P4T A;  3AAA A;  3HW9 A;  4LSH A;  4C4V A;  2KXP A;  3DWN A;  4FZL A;  2IWW A;  5EE2 A;  4RLB A;  3VY8 X;  4AYD C;  5ADX L;  2YNK A;  4AYM C;  1Q9G A;  4GHB A;  2PRN A;  2J4U P;  2XE3 A;  4G75 A;  3BRY A;  2R4L A;  4RJX A;  2XE5 A;  3DZM A;  3V8U A;  2POR A;  3LK3 A;  4N58 A;  5FVN A;  4FZN A;  4K3B A;  2R4P A;  4FSO A;  1GFP A;  3JTY A;  4FSP A;  2J1N A;  1YS5 A;  2Y0L A;  4FZM A;  4GCQ A;  3T24 A;  5AFU K;  5DL7 A;  4PUX A;  4XNL A;  2ERV A;  2XE2 A;  3KVD D;  3LK2 B;  4D65 A;  3NJT A;  2OMF A;  5GTH O;  5DL8 A;  1BH3 A;  2WJR A;  4LSF A;  4N74 A;  5GTI O;  4F4B A;  2KDY A;  5GV0 A;  1IZN B;  1BT9 A;  3AA0 B;  2R4N A;  5DL5 A;  3T0S A;  2KZ7 B;  2XTQ A;  4FOZ A;  3HOL A;  1T1L A;  4GCP A;  2R8A A;  2R89 A;  4AZL A;  3PF1 A;  3PGS A;  4D5U A;  1GFM A;  4XNK A;  4N59 A;  6PRN A;  1ORM A;  4QQ1 A;  4D64 A;  4GF4 A;  4LSE A;  5G26 A;  5E79 O;  3AA7 B;  2M06 A;  3LK4 2;  2Y0K A;  3PGU A;  2GE4 A;  3G7G A;  3PGR A;  4FRX A;  1MM4 A;  4PR7 A;  3LK4 1;  3LK2 A;  4U9C A;  1OSM A;  1PRN A;  3AA6 B;  3VE2 A;  4C69 X;  3DA3 A;  1ZHY A;  2ZFG A;  1PHO A;  1QJP A;  3POX A;  5H2F O;  3WI4 A;  3AA1 B;  2M07 A;  1IZN A;  2F1T A;  3K19 A;  3SY9 A;  1ZHT A;  4AKR B;  1T16 A;  2LHF A;  3AA0 A;  2MNH A;  3HOE A;  4O3W A;  3SYS A;  2KZ7 A;  4E1T A;  1S5L O;  3A0H O;  2XE1 A;  3NSG A;  2ZLD A;  4UB6 O;  5KAI O;  4GCS A;  1Q9F A;  2YPV A;  4C00 A;  4E1S A;  3RBH A;  2JQY A;  2XG6 A;  1HXX A;  5PRN A;  5G38 A;  1HXT A;  3AA7 A;  4RJW A;  3EMN X;  4PJ0 O;  5G3A A;  5JDP A;  2XTR A; 
#chains in the Genus database with same CATH homology
 3BRY A;  2R4L A;  3DWN A;  2R4N A;  1T16 A;  3BRZ A;  3BS0 A;  2R88 A;  2R4P A;  3DWO X;  3PGS A;  3PGR A;  1T1L A;  3PGU A;  2R8A A;  2R89 A;  3PF1 A;  2R4O A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2R4NA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN