2R88A

Crystal structure of the long-chain fatty acid transporter fadl mutant delta s3 kink
Total Genus 96

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
418
structure length
365
Chain Sequence
FQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITANDLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKTAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF
5010015020025030035035030025020015010050
020406080Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (10-14)TIV8 (296-322)TIV1 (15-18)TIV2 (17-20)TI1 (19-22)TIV7 (234-267)3H1 (28-32)TI10 (217-220)S8 (272-283)TIV3 (20-23)S7 (220-227)3H2 (34-39)EMPTYTI6 (136-139)S12 (365-375)S2 (77-87)TI2 (62-65)S3 (92-106)TIV4 (70-73)TI13 (357-360)3H3 (114-116)TI4 (108-111)TI5 (111-114)S11 (338-348)S5 (139-157)S4 (119-134)AH3 (178-189)TI7 (172-175)TIV5 (174-177)TI9 (191-194)S6 (195-217)TI11 (283-286)O1 (332-334)S10 (324-332)TIV10 (353-356)TIV9 (352-355)TI12 (335-338)S1 (44-60)TVIII1 (358-361)TI3 (89-92)AH2 (160-171)TIV6 (215-218)S9 (286-296)Updating...
connected with : NaN
molecule tags Transport protein
source organism Escherichia coli
publication title Transmembrane passage of hydrophobic compounds through a protein channel wall
pubmed doi rcsb
molecule keywords Long-chain fatty acid transport protein
total genus 96
structure length 365
sequence length 418
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-09-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.60 Mainly Beta Beta Barrel Porin Outer membrane protein transport protein (OMPP1/FadL/TodX) 2r88A00
2R4NA 1T1LA 2R8AA 3BRYA 2R88A 3BRZA 3PGSA 3DWOX 3PF1A 3DWNA 3PGUA 2R4OA 2R89A 2R4PA 3PGRA 1T16A 3BS0A 2R4LA
chains in the Genus database with same CATH superfamily
3WU2O 3T0SA 5ADXK 4FOZA 4AUIA 3PGRA 4KRAA 4UB8O 5EE2A 5AFUK 1ZHTA 5DL6A 3SY7A 3DA3A 4D5UA 2XE2A 2IWWA 3PGSA 1BXWA 4C4VB 4LSIA 5DL5A 3AA6B 5G38A 5G39A 4AYMC 3LK2B 4FMSA 2O4VA 1H6S1 1S5LO 2XE5A 4E1SA 4FRTA 2W81C 1GFNA 2KXPB 3LK42 4O3YA 4FESA 1ZHWA 1ZHYA 2R89A 4KR8A 2K4TA 3T20A 3WI4A 5B66O 1PHOA 3QRAA 2KZ7B 2X9KA 3VZTX 5G26A 3G7GA 3DZMA 2Y0KA 3FYXA 1ZHZA 3RBHA 1MM5A 4N59A 4O3ZA 3AA0B 1BT9A 3PGUA 4FSOA 4XNKA 5DL8A 2MHLA 3TZGA 4KR4A 3AA7A 4C00A 1GFQA 4FSPA 5E79O 1QJ9A 3UAQA 3UU2A 4AYID 3AAAA 4LSHA 3VZWX 4AKRA 4AYEC 2K0LA 4LSFA 2N2LA 4GHBA 1IZNB 3PQSA 3A2SX 3PQUA 2J1NA 4PR7A 2J4UP 3POUA 4O3XB 1Q9FA 4FZNA 2ERVA 2QTKA 4G75A 4D65A 1PRNA 2ODJA 2Y7SA 1QJ8A 3AAEB 4B61A 4RLBA 1THQA 4LSEA 4AYDC 3C5OA 5AFUL 5ADXL 2N2MA 5PRNA 2FGRA 2XMXA 1GFMA 3BS0A 1T1LA 4FQEA 4O49A 4XNLA 3VZUX 2IWVA 3BRZA 3JTYA 4RJWA 4CTDA 2M06A 4K3CA 4O3WA 3HW9A 3SZVA 3HOEA 2OMFA 4FZLA 3HOLA 3SYBA 3NJTA 3DWOX 3GP6A 4AZLA 3QRCA 4O4XA 5GTHO 5H2FO 2MNHA 2F1CX 4GCSA 1Q9GA 3KZIO 4N58A 4C4VA 4FT6A 3NSGA 3VY8X 1P4TA 2WVPA 3A0HO 4FRXA 5GTIO 3PRNA 3A0BO 5D5DA 1BH3A 2R4OA 3JCUO 2R4LA 3SZDA 2KDYA 2W80C 3BRYA 3O0EA 2F1TA 4JCHA 1MPFA 1OPFA 4GF4A 5TISO 4AYNA 4AKMA 3AAAB 1YS5A 4FUVA 3EMNX 5KAIO 2R8AA 6PRNA 5GV0A 2LHFA 2XTQA 3PF1A 3AA1A 3LK3A 2R4PA 5FVNA 3SYSA 5JDPA 4RL9A 2WJRA 4BUMX 1T16A 5IYUA 3HWBA 1GFOA 3SY9A 4N74A 2PRNA 4PUXA 4C69X 2FGQX 4IL6O 4D64A 1ZHXA 2XE3A 3VE2A 2JMMA 3LK41 5G3AA 3V8UA 4Z3TA 3UPGA 4E1TA 3AAEA 3KVDD 4FZMA 2R88A 2XTRA 3AA6A 1GFPA 2PORA 1HXTA 4JFBA 4K3BA 2F1VA 3LK2A 8PRNA 2WJQA 2YPVA 2LFUA 2M07A 3POQA 4UB6O 3VY9X 5B5EO 2Y2XA 2GE4A 2KXPA 4GCPA 2JQYA 4QQ1A 4RLCA 3AA7B 2Y0LA 5T5FA 7PRNA 2XG6A 2Y0HA 4G76A 4U9CA 3VE1A 2KZ7A 3PORA 4O4UA 3WI5A 4AKRB 4N75A 2YNKA 1MM4A 3K19A 4PJ0O 4GCQA 3AA0A 2X27X 1OSMA 2KC0A 2ZFGA 3T24A 1ORMA 1HXXA 2ZLDA 1E54A 5DL7A 2R4NA 4AFKA 3POXA 1G90A 4F4BA 3DWNA 2AXTO 1IZNA 1HXUA 2XE1A 3AA1B 3LK3B 5KAFO 4RJXA 1QJPA 3DA4A
chains in the Genus database with same CATH topology
2R4NA 1T1LA 2R8AA 3BRYA 2R88A 3BRZA 3PGSA 3DWOX 3PF1A 3DWNA 3PGUA 2R4OA 2R89A 2R4PA 3PGRA 1T16A 3BS0A 2R4LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R4N A;  1T1L A;  2R8A A;  3BRY A;  2R88 A;  3BRZ A;  3PGS A;  3DWO X;  3PF1 A;  3DWN A;  3PGU A;  2R4O A;  2R89 A;  2R4P A;  3PGR A;  1T16 A;  3BS0 A;  2R4L A; 
#chains in the Genus database with same CATH topology
 3WU2 O;  3T0S A;  5ADX K;  4FOZ A;  4AUI A;  3PGR A;  4KRA A;  4UB8 O;  5EE2 A;  5AFU K;  1ZHT A;  5DL6 A;  3SY7 A;  3DA3 A;  4D5U A;  2XE2 A;  2IWW A;  3PGS A;  1BXW A;  4C4V B;  4LSI A;  5DL5 A;  3AA6 B;  5G38 A;  5G39 A;  4AYM C;  3LK2 B;  4FMS A;  2O4V A;  1H6S 1;  1S5L O;  2XE5 A;  4E1S A;  4FRT A;  2W81 C;  1GFN A;  2KXP B;  3LK4 2;  4O3Y A;  4FES A;  1ZHW A;  1ZHY A;  2R89 A;  4KR8 A;  2K4T A;  3T20 A;  3WI4 A;  5B66 O;  1PHO A;  3QRA A;  2KZ7 B;  2X9K A;  3VZT X;  5G26 A;  3G7G A;  3DZM A;  2Y0K A;  3FYX A;  1ZHZ A;  3RBH A;  1MM5 A;  4N59 A;  4O3Z A;  3AA0 B;  1BT9 A;  3PGU A;  4FSO A;  4XNK A;  5DL8 A;  2MHL A;  3TZG A;  4KR4 A;  3AA7 A;  4C00 A;  1GFQ A;  4FSP A;  5E79 O;  1QJ9 A;  3UAQ A;  3UU2 A;  4AYI D;  3AAA A;  4LSH A;  3VZW X;  4AKR A;  4AYE C;  2K0L A;  4LSF A;  2N2L A;  4GHB A;  1IZN B;  3PQS A;  3A2S X;  3PQU A;  2J1N A;  4PR7 A;  2J4U P;  3POU A;  4O3X B;  1Q9F A;  4FZN A;  2ERV A;  2QTK A;  4G75 A;  4D65 A;  1PRN A;  2ODJ A;  2Y7S A;  1QJ8 A;  3AAE B;  4B61 A;  4RLB A;  1THQ A;  4LSE A;  4AYD C;  3C5O A;  5AFU L;  5ADX L;  2N2M A;  5PRN A;  2FGR A;  2XMX A;  1GFM A;  3BS0 A;  1T1L A;  4FQE A;  4O49 A;  4XNL A;  3VZU X;  2IWV A;  3BRZ A;  3JTY A;  4RJW A;  4CTD A;  2M06 A;  4K3C A;  4O3W A;  3HW9 A;  3SZV A;  3HOE A;  2OMF A;  4FZL A;  3HOL A;  3SYB A;  3NJT A;  3DWO X;  3GP6 A;  4AZL A;  3QRC A;  4O4X A;  5GTH O;  5H2F O;  2MNH A;  2F1C X;  4GCS A;  1Q9G A;  3KZI O;  4N58 A;  4C4V A;  4FT6 A;  3NSG A;  3VY8 X;  1P4T A;  2WVP A;  3A0H O;  4FRX A;  5GTI O;  3PRN A;  3A0B O;  5D5D A;  1BH3 A;  2R4O A;  3JCU O;  2R4L A;  3SZD A;  2KDY A;  2W80 C;  3BRY A;  3O0E A;  2F1T A;  4JCH A;  1MPF A;  1OPF A;  4GF4 A;  5TIS O;  4AYN A;  4AKM A;  3AAA B;  1YS5 A;  4FUV A;  3EMN X;  5KAI O;  2R8A A;  6PRN A;  5GV0 A;  2LHF A;  2XTQ A;  3PF1 A;  3AA1 A;  3LK3 A;  2R4P A;  5FVN A;  3SYS A;  5JDP A;  4RL9 A;  2WJR A;  4BUM X;  1T16 A;  5IYU A;  3HWB A;  1GFO A;  3SY9 A;  4N74 A;  2PRN A;  4PUX A;  4C69 X;  2FGQ X;  4IL6 O;  4D64 A;  1ZHX A;  2XE3 A;  3VE2 A;  2JMM A;  3LK4 1;  5G3A A;  3V8U A;  4Z3T A;  3UPG A;  4E1T A;  3AAE A;  3KVD D;  4FZM A;  2R88 A;  2XTR A;  3AA6 A;  1GFP A;  2POR A;  1HXT A;  4JFB A;  4K3B A;  2F1V A;  3LK2 A;  8PRN A;  2WJQ A;  2YPV A;  2LFU A;  2M07 A;  3POQ A;  4UB6 O;  3VY9 X;  5B5E O;  2Y2X A;  2GE4 A;  2KXP A;  4GCP A;  2JQY A;  4QQ1 A;  4RLC A;  3AA7 B;  2Y0L A;  5T5F A;  7PRN A;  2XG6 A;  2Y0H A;  4G76 A;  4U9C A;  3VE1 A;  2KZ7 A;  3POR A;  4O4U A;  3WI5 A;  4AKR B;  4N75 A;  2YNK A;  1MM4 A;  3K19 A;  4PJ0 O;  4GCQ A;  3AA0 A;  2X27 X;  1OSM A;  2KC0 A;  2ZFG A;  3T24 A;  1ORM A;  1HXX A;  2ZLD A;  1E54 A;  5DL7 A;  2R4N A;  4AFK A;  3POX A;  1G90 A;  4F4B A;  3DWN A;  2AXT O;  1IZN A;  1HXU A;  2XE1 A;  3AA1 B;  3LK3 B;  5KAF O;  4RJX A;  1QJP A;  3DA4 A; 
#chains in the Genus database with same CATH homology
 2R4N A;  1T1L A;  2R8A A;  3BRY A;  2R88 A;  3BRZ A;  3PGS A;  3DWO X;  3PF1 A;  3DWN A;  3PGU A;  2R4O A;  2R89 A;  2R4P A;  3PGR A;  1T16 A;  3BS0 A;  2R4L A; 
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