2WJRA

Nanc porin structure in rhombohedral crystal form.
Total Genus 62

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
214
structure length
204
Chain Sequence
ALDVRGGYRSGSHAYETRLKVSEGWQNGWWASMESNTWNTINDVQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSGDMSRDNVHRWDGYVTYHINSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDRQGVYNGRDNLSENSYRIGVSFKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (15-25)S15 (199-213)S1 (3-10)S13 (165-175)TIV4 (195-198)TIV1 (10-13)TI1 (11-14)S3 (30-41)TI2 (26-29)TI3 (66-69)S4 (54-61)TI4 (80-83)S6 (69-80)S8 (100-111)TI5 (97-100)O1 (124-126)S7 (83-97)TIV2 (95-98)S12 (142-153)S9 (114-116)TI6 (117-120)TI7 (139-142)S10 (122-124)S11 (127-139)O2 (155-157)S14 (181-196)TI9 (178-181)TVIII1 (176-179)TI8 (159-162)S5 (63-66)Updating...
connected with : NaN
molecule tags Transport protein
source organism Escherichia coli
publication title Nanc Crystal Structure, a Model for Outer Membrane Channels of the Acidic Sugar-Specific Kdgm Porin Family.
pubmed doi rcsb
molecule keywords PROBABLE N-ACETYLNEURAMINIC ACID OUTER MEMBRANE CHANNEL PROT
total genus 62
structure length 204
sequence length 214
ec nomenclature
pdb deposition date 2009-05-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.40 Mainly Beta Beta Barrel Porin monomeric porin ompg 2wjrA00
4FQEA 4CTDA 2WJRA 2X9KA 2WVPA 2IWWA 2IWVA 4PR7A 2JQYA 2F1CX 2WJQA
chains in the Genus database with same CATH superfamily
4N58A 3HWBA 3C5OA 3DWNA 3NJTA 1MPFA 2WVPA 4FZNA 4UB8O 3RBHA 2M07A 3VZUX 4C4VA 4KR8A 4AYDC 1G90A 2R88A 2KZ7A 4K3BA 3A0HO 4GF4A 4XNLA 2LFUA 4RL9A 2R4OA 2MNHA 4FRXA 3DA4A 2W81C 4GCQA 5G39A 2QTKA 2Y2XA 4KRAA 5G3AA 3WI4A 3AA7B 3DZMA 3KVDD 3POUA 4N75A 2W80C 3BS0A 2KXPA 2J4UP 2KDYA 3JCUO 2IWVA 4FZLA 3AAEB 2K0LA 1E54A 2O4VA 1P4TA 1PHOA 1ZHYA 2MHLA 2Y0LA 3O0EA 5D5DA 2J1NA 4QQ1A 3POXA 2ERVA 2YPVA 4K3CA 3T24A 4G76A 3QRAA 4GCPA 3LK3B 4FQEA 4GCSA 1Q9FA 1T16A 4O4XA 5GTHO 5B5EO 1PRNA 3SY7A 3AA1B 3AAAA 3PGSA 2WJRA 2X27X 3DA3A 4U9CA 4AZLA 7PRNA 4PR7A 5T5FA 3NSGA 3A2SX 4LSEA 3VY8X 2XTQA 4F4BA 4G75A 4B61A 5KAFO 4FRTA 4O3XB 3WI5A 5DL8A 4AFKA 4C00A 3G7GA 5DL5A 3SY9A 5ADXK 5DL7A 2ZFGA 2PRNA 2YNKA 3LK42 4AUIA 3PF1A 4LSFA 2F1VA 4BUMX 4LSIA 4FZMA 5TISO 6PRNA 4RJWA 1OPFA 3EMNX 3PQSA 3UU2A 2GE4A 5JDPA 4KR4A 4D65A 3VZTX 2XMXA 3LK2A 3WU2O 4C4VB 4E1SA 3K19A 5AFUL 3VZWX 2Y7SA 1BH3A 2XE1A 2KZ7B 4O3YA 2XE3A 2JQYA 4N74A 8PRNA 3PRNA 4IL6O 2XE2A 5FVNA 3PGRA 4O4UA 3JTYA 4D5UA 2OMFA 4CTDA 2N2LA 4RLBA 4FUVA 3AA0A 1ZHTA 2K4TA 3UPGA 3PGUA 3T0SA 3LK3A 2M06A 2PORA 4FT6A 2R4LA 4D64A 3AA6B 1Q9GA 1GFPA 2ZLDA 3AA1A 4AKMA 2XE5A 3VE2A 4AYEC 3UAQA 3HOLA 2R89A 2R4PA 4FSPA 5H2FO 3A0BO 2WJQA 2FGRA 2JMMA 4O3WA 1OSMA 2Y0HA 4UB6O 1ZHWA 4JCHA 3SZDA 4AKRB 4AYMC 1IZNB 2X9KA 4N59A 1H6S1 3SZVA 3TZGA 1MM4A 4RJXA 5DL6A 5G38A 3FYXA 1ZHXA 2KC0A 1ORMA 3AA7A 2LHFA 3BRYA 3AAAB 3PQUA 4O49A 4PJ0O 3VY9X 2R8AA 2F1TA 4O3ZA 5IYUA 3T20A 3SYBA 3DWOX 3BRZA 2FGQX 5KAIO 5B66O 1QJ8A 4FOZA 2N2MA 2F1CX 5PRNA 3AAEA 4AYNA 3PORA 4PUXA 2Y0KA 4RLCA 4JFBA 1HXUA 3KZIO 5GV0A 1ZHZA 3LK41 1GFMA 3POQA 5G26A 4Z3TA 1BT9A 1QJ9A 4FSOA 1T1LA 1MM5A 3SYSA 4FESA 5E79O 4E1TA 2KXPB 3HW9A 1QJPA 3VE1A 3V8UA 1S5LO 2AXTO 2ODJA 1GFOA 3AA6A 3LK2B 4C69X 2R4NA 5ADXL 1BXWA 1GFQA 3QRCA 5AFUK 1THQA 1HXTA 2XTRA 1YS5A 4AKRA 2IWWA 2XG6A 4GHBA 5GTIO 1IZNA 1HXXA 4XNKA 5EE2A 1GFNA 3AA0B 4FMSA 4LSHA 4AYID 3HOEA 3GP6A
chains in the Genus database with same CATH topology
4FQEA 4CTDA 2WJRA 2X9KA 2WVPA 2IWWA 2IWVA 4PR7A 2JQYA 2F1CX 2WJQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FQE A;  4CTD A;  2WJR A;  2X9K A;  2WVP A;  2IWW A;  2IWV A;  4PR7 A;  2JQY A;  2F1C X;  2WJQ A; 
#chains in the Genus database with same CATH topology
 4N58 A;  3HWB A;  3C5O A;  3DWN A;  3NJT A;  1MPF A;  2WVP A;  4FZN A;  4UB8 O;  3RBH A;  2M07 A;  3VZU X;  4C4V A;  4KR8 A;  4AYD C;  1G90 A;  2R88 A;  2KZ7 A;  4K3B A;  3A0H O;  4GF4 A;  4XNL A;  2LFU A;  4RL9 A;  2R4O A;  2MNH A;  4FRX A;  3DA4 A;  2W81 C;  4GCQ A;  5G39 A;  2QTK A;  2Y2X A;  4KRA A;  5G3A A;  3WI4 A;  3AA7 B;  3DZM A;  3KVD D;  3POU A;  4N75 A;  2W80 C;  3BS0 A;  2KXP A;  2J4U P;  2KDY A;  3JCU O;  2IWV A;  4FZL A;  3AAE B;  2K0L A;  1E54 A;  2O4V A;  1P4T A;  1PHO A;  1ZHY A;  2MHL A;  2Y0L A;  3O0E A;  5D5D A;  2J1N A;  4QQ1 A;  3POX A;  2ERV A;  2YPV A;  4K3C A;  3T24 A;  4G76 A;  3QRA A;  4GCP A;  3LK3 B;  4FQE A;  4GCS A;  1Q9F A;  1T16 A;  4O4X A;  5GTH O;  5B5E O;  1PRN A;  3SY7 A;  3AA1 B;  3AAA A;  3PGS A;  2WJR A;  2X27 X;  3DA3 A;  4U9C A;  4AZL A;  7PRN A;  4PR7 A;  5T5F A;  3NSG A;  3A2S X;  4LSE A;  3VY8 X;  2XTQ A;  4F4B A;  4G75 A;  4B61 A;  5KAF O;  4FRT A;  4O3X B;  3WI5 A;  5DL8 A;  4AFK A;  4C00 A;  3G7G A;  5DL5 A;  3SY9 A;  5ADX K;  5DL7 A;  2ZFG A;  2PRN A;  2YNK A;  3LK4 2;  4AUI A;  3PF1 A;  4LSF A;  2F1V A;  4BUM X;  4LSI A;  4FZM A;  5TIS O;  6PRN A;  4RJW A;  1OPF A;  3EMN X;  3PQS A;  3UU2 A;  2GE4 A;  5JDP A;  4KR4 A;  4D65 A;  3VZT X;  2XMX A;  3LK2 A;  3WU2 O;  4C4V B;  4E1S A;  3K19 A;  5AFU L;  3VZW X;  2Y7S A;  1BH3 A;  2XE1 A;  2KZ7 B;  4O3Y A;  2XE3 A;  2JQY A;  4N74 A;  8PRN A;  3PRN A;  4IL6 O;  2XE2 A;  5FVN A;  3PGR A;  4O4U A;  3JTY A;  4D5U A;  2OMF A;  4CTD A;  2N2L A;  4RLB A;  4FUV A;  3AA0 A;  1ZHT A;  2K4T A;  3UPG A;  3PGU A;  3T0S A;  3LK3 A;  2M06 A;  2POR A;  4FT6 A;  2R4L A;  4D64 A;  3AA6 B;  1Q9G A;  1GFP A;  2ZLD A;  3AA1 A;  4AKM A;  2XE5 A;  3VE2 A;  4AYE C;  3UAQ A;  3HOL A;  2R89 A;  2R4P A;  4FSP A;  5H2F O;  3A0B O;  2WJQ A;  2FGR A;  2JMM A;  4O3W A;  1OSM A;  2Y0H A;  4UB6 O;  1ZHW A;  4JCH A;  3SZD A;  4AKR B;  4AYM C;  1IZN B;  2X9K A;  4N59 A;  1H6S 1;  3SZV A;  3TZG A;  1MM4 A;  4RJX A;  5DL6 A;  5G38 A;  3FYX A;  1ZHX A;  2KC0 A;  1ORM A;  3AA7 A;  2LHF A;  3BRY A;  3AAA B;  3PQU A;  4O49 A;  4PJ0 O;  3VY9 X;  2R8A A;  2F1T A;  4O3Z A;  5IYU A;  3T20 A;  3SYB A;  3DWO X;  3BRZ A;  2FGQ X;  5KAI O;  5B66 O;  1QJ8 A;  4FOZ A;  2N2M A;  2F1C X;  5PRN A;  3AAE A;  4AYN A;  3POR A;  4PUX A;  2Y0K A;  4RLC A;  4JFB A;  1HXU A;  3KZI O;  5GV0 A;  1ZHZ A;  3LK4 1;  1GFM A;  3POQ A;  5G26 A;  4Z3T A;  1BT9 A;  1QJ9 A;  4FSO A;  1T1L A;  1MM5 A;  3SYS A;  4FES A;  5E79 O;  4E1T A;  2KXP B;  3HW9 A;  1QJP A;  3VE1 A;  3V8U A;  1S5L O;  2AXT O;  2ODJ A;  1GFO A;  3AA6 A;  3LK2 B;  4C69 X;  2R4N A;  5ADX L;  1BXW A;  1GFQ A;  3QRC A;  5AFU K;  1THQ A;  1HXT A;  2XTR A;  1YS5 A;  4AKR A;  2IWW A;  2XG6 A;  4GHB A;  5GTI O;  1IZN A;  1HXX A;  4XNK A;  5EE2 A;  1GFN A;  3AA0 B;  4FMS A;  4LSH A;  4AYI D;  3HOE A;  3GP6 A; 
#chains in the Genus database with same CATH homology
 4FQE A;  4CTD A;  2WJR A;  2X9K A;  2WVP A;  2IWW A;  2IWV A;  4PR7 A;  2JQY A;  2F1C X;  2WJQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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