2WVPA

Synthetically modified ompg
Total Genus 62

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
280
structure length
262
Chain Sequence
NDWHFNIGAMYEIENVGLAEPSVYFNAANGPWRIALAYYQEGPVDYKRGTWFDRPELEVHYQFLENDDFSFGLTGGFRNYGYHYVDEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDLNTTGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPCTRIGLDRWSNWDEGHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDHDEGDSDKFHYAGVGVNYSFHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (29-40)S1 (6-18)TIV1 (17-28)S3 (43-54)TII'1 (40-43)S14 (248-258)TIV3 (54-57)TI1 (80-83)TIV4 (56-62)TIV6 (98-101)S4 (65-80)TIV5 (57-63)S5 (83-97)S7 (126-138)S6 (106-121)TI2 (123-126)TIV7 (138-141)TIV8 (178-181)TI4 (180-183)S8 (149-162)S9 (165-177)TII'2 (201-204)S10 (188-196)S12 (204-217)S11 (199-201)TIV11 (258-261)AH1 (141-144)TI3 (162-165)TII1 (184-187)TI5 (218-221)S13 (234-243)Updating...
connected with : NaN
molecule tags Membrane protein
source organism Escherichia coli
publication title Structural and Functional Characterization of a Synthetically Modified Ompg.
pubmed doi rcsb
molecule keywords OUTER MEMBRANE PROTEIN G
total genus 62
structure length 262
sequence length 280
ec nomenclature
pdb deposition date 2009-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09381 Porin_OmpG Outer membrane protein G (OmpG)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.40 Mainly Beta Beta Barrel Porin monomeric porin ompg 2wvpA00
4PR7A 4CTDA 2X9KA 2WVPA 2F1CX 2WJRA 2WJQA 2IWWA 2JQYA 4FQEA 2IWVA
chains in the Genus database with same CATH superfamily
3PGRA 2K0LA 2O4VA 3KVDD 2M07A 3PRNA 4G76A 4U9CA 2J4UP 3LK42 4GCPA 4FUVA 3LK41 2IWWA 3VZTX 2GE4A 2IWVA 4FRTA 1ZHTA 4FSOA 8PRNA 4O4UA 4FT6A 1T16A 2R4OA 5GTHO 5B66O 2MHLA 2XE2A 4O49A 4FOZA 3HWBA 3NJTA 3POUA 1Q9GA 2FGRA 3LK3B 3PQUA 4FZMA 4FZLA 3K19A 2X27X 3SZVA 3UAQA 4AFKA 3WI5A 2FGQX 1GFMA 2J1NA 2XG6A 4UB6O 2KXPA 4XNLA 2F1VA 5G39A 4LSFA 2MNHA 3WI4A 5T5FA 4CTDA 1QJ8A 2QTKA 4E1SA 4GCQA 4AUIA 5AFUK 4KR8A 2N2MA 3PQSA 1BT9A 4FESA 3VE2A 3AA7A 4AYDC 4FSPA 1PHOA 3PGUA 2OMFA 1BH3A 2Y7SA 4IL6O 1GFQA 1IZNB 5GV0A 2K4TA 4C00A 4GF4A 2XE5A 4RJXA 2XMXA 5G3AA 3T20A 2AXTO 4D5UA 5GTIO 2KC0A 2Y2XA 3A0HO 4AKRA 2PORA 4C69X 5ADXL 2XTQA 4UB8O 3QRAA 4RLCA 4N59A 3SY7A 4B61A 4F4BA 1YS5A 4O3YA 1THQA 4LSIA 5PRNA 3DZMA 2KZ7A 2KZ7B 2X9KA 3VZWX 4JCHA 2R89A 3GP6A 2XE1A 2KXPB 2F1CX 4Z3TA 4O3WA 4D65A 4N74A 3AAAA 4AYID 3SZDA 5H2FO 1Q9FA 2YNKA 4FZNA 4RL9A 3AA7B 3T24A 1GFOA 3V8UA 4PR7A 5KAFO 1OPFA 2Y0KA 1ORMA 3A2SX 2KDYA 5DL6A 5KAIO 2M06A 5B5EO 3AA0A 3AA0B 3C5OA 4FRXA 4LSEA 5DL7A 4AKRB 4AYEC 4AYMC 4N58A 3VZUX 1ZHXA 2ZLDA 3DWOX 1HXUA 1QJ9A 1MM4A 2Y0LA 2R4LA 3JCUO 4K3CA 4XNKA 3O0EA 2JQYA 1E54A 3VE1A 2YPVA 2R4PA 3DWNA 3G7GA 6PRNA 1T1LA 3HOLA 1PRNA 2W81C 2LHFA 3NSGA 3BRYA 1GFNA 2WJRA 3JTYA 3POQA 3A0BO 5D5DA 3RBHA 4E1TA 3PGSA 3PORA 1P4TA 1ZHYA 5IYUA 2LFUA 4RJWA 4AKMA 4KRAA 3AAAB 1GFPA 4O3ZA 2N2LA 2Y0HA 1BXWA 2PRNA 1QJPA 4KR4A 5AFUL 5DL8A 4PUXA 4O4XA 4N75A 1S5LO 3HOEA 3HW9A 3AAEA 3AAEB 1HXTA 3LK2A 3LK2B 2F1TA 4FMSA 2XE3A 2ODJA 1ZHWA 3POXA 3SYBA 3AA6A 3AA6B 4GCSA 4QQ1A 5G26A 3VY8X 5ADXK 1HXXA 4G75A 7PRNA 1G90A 2WVPA 5E79O 4JFBA 3VY9X 3AA1A 2WJQA 3AA1B 1OSMA 3LK3A 2ZFGA 4PJ0O 3SYSA 3DA4A 4D64A 3FYXA 3BRZA 2ERVA 1ZHZA 2W80C 1MM5A 3SY9A 2R4NA 2R8AA 2XTRA 5G38A 4K3BA 1MPFA 5JDPA 3PF1A 4BUMX 4RLBA 4AZLA 3BS0A 3DA3A 2JMMA 4O3XB 4LSHA 4AYNA 2R88A 3KZIO 3TZGA 5TISO 4GHBA 4C4VB 4C4VA 3QRCA 5DL5A 5EE2A 5FVNA 3UPGA 3WU2O 3EMNX 4FQEA 3T0SA 1IZNA 3UU2A 1H6S1
chains in the Genus database with same CATH topology
4PR7A 4CTDA 2X9KA 2WVPA 2F1CX 2WJRA 2WJQA 2IWWA 2JQYA 4FQEA 2IWVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PR7 A;  4CTD A;  2X9K A;  2WVP A;  2F1C X;  2WJR A;  2WJQ A;  2IWW A;  2JQY A;  4FQE A;  2IWV A; 
#chains in the Genus database with same CATH topology
 3PGR A;  2K0L A;  2O4V A;  3KVD D;  2M07 A;  3PRN A;  4G76 A;  4U9C A;  2J4U P;  3LK4 2;  4GCP A;  4FUV A;  3LK4 1;  2IWW A;  3VZT X;  2GE4 A;  2IWV A;  4FRT A;  1ZHT A;  4FSO A;  8PRN A;  4O4U A;  4FT6 A;  1T16 A;  2R4O A;  5GTH O;  5B66 O;  2MHL A;  2XE2 A;  4O49 A;  4FOZ A;  3HWB A;  3NJT A;  3POU A;  1Q9G A;  2FGR A;  3LK3 B;  3PQU A;  4FZM A;  4FZL A;  3K19 A;  2X27 X;  3SZV A;  3UAQ A;  4AFK A;  3WI5 A;  2FGQ X;  1GFM A;  2J1N A;  2XG6 A;  4UB6 O;  2KXP A;  4XNL A;  2F1V A;  5G39 A;  4LSF A;  2MNH A;  3WI4 A;  5T5F A;  4CTD A;  1QJ8 A;  2QTK A;  4E1S A;  4GCQ A;  4AUI A;  5AFU K;  4KR8 A;  2N2M A;  3PQS A;  1BT9 A;  4FES A;  3VE2 A;  3AA7 A;  4AYD C;  4FSP A;  1PHO A;  3PGU A;  2OMF A;  1BH3 A;  2Y7S A;  4IL6 O;  1GFQ A;  1IZN B;  5GV0 A;  2K4T A;  4C00 A;  4GF4 A;  2XE5 A;  4RJX A;  2XMX A;  5G3A A;  3T20 A;  2AXT O;  4D5U A;  5GTI O;  2KC0 A;  2Y2X A;  3A0H O;  4AKR A;  2POR A;  4C69 X;  5ADX L;  2XTQ A;  4UB8 O;  3QRA A;  4RLC A;  4N59 A;  3SY7 A;  4B61 A;  4F4B A;  1YS5 A;  4O3Y A;  1THQ A;  4LSI A;  5PRN A;  3DZM A;  2KZ7 A;  2KZ7 B;  2X9K A;  3VZW X;  4JCH A;  2R89 A;  3GP6 A;  2XE1 A;  2KXP B;  2F1C X;  4Z3T A;  4O3W A;  4D65 A;  4N74 A;  3AAA A;  4AYI D;  3SZD A;  5H2F O;  1Q9F A;  2YNK A;  4FZN A;  4RL9 A;  3AA7 B;  3T24 A;  1GFO A;  3V8U A;  4PR7 A;  5KAF O;  1OPF A;  2Y0K A;  1ORM A;  3A2S X;  2KDY A;  5DL6 A;  5KAI O;  2M06 A;  5B5E O;  3AA0 A;  3AA0 B;  3C5O A;  4FRX A;  4LSE A;  5DL7 A;  4AKR B;  4AYE C;  4AYM C;  4N58 A;  3VZU X;  1ZHX A;  2ZLD A;  3DWO X;  1HXU A;  1QJ9 A;  1MM4 A;  2Y0L A;  2R4L A;  3JCU O;  4K3C A;  4XNK A;  3O0E A;  2JQY A;  1E54 A;  3VE1 A;  2YPV A;  2R4P A;  3DWN A;  3G7G A;  6PRN A;  1T1L A;  3HOL A;  1PRN A;  2W81 C;  2LHF A;  3NSG A;  3BRY A;  1GFN A;  2WJR A;  3JTY A;  3POQ A;  3A0B O;  5D5D A;  3RBH A;  4E1T A;  3PGS A;  3POR A;  1P4T A;  1ZHY A;  5IYU A;  2LFU A;  4RJW A;  4AKM A;  4KRA A;  3AAA B;  1GFP A;  4O3Z A;  2N2L A;  2Y0H A;  1BXW A;  2PRN A;  1QJP A;  4KR4 A;  5AFU L;  5DL8 A;  4PUX A;  4O4X A;  4N75 A;  1S5L O;  3HOE A;  3HW9 A;  3AAE A;  3AAE B;  1HXT A;  3LK2 A;  3LK2 B;  2F1T A;  4FMS A;  2XE3 A;  2ODJ A;  1ZHW A;  3POX A;  3SYB A;  3AA6 A;  3AA6 B;  4GCS A;  4QQ1 A;  5G26 A;  3VY8 X;  5ADX K;  1HXX A;  4G75 A;  7PRN A;  1G90 A;  2WVP A;  5E79 O;  4JFB A;  3VY9 X;  3AA1 A;  2WJQ A;  3AA1 B;  1OSM A;  3LK3 A;  2ZFG A;  4PJ0 O;  3SYS A;  3DA4 A;  4D64 A;  3FYX A;  3BRZ A;  2ERV A;  1ZHZ A;  2W80 C;  1MM5 A;  3SY9 A;  2R4N A;  2R8A A;  2XTR A;  5G38 A;  4K3B A;  1MPF A;  5JDP A;  3PF1 A;  4BUM X;  4RLB A;  4AZL A;  3BS0 A;  3DA3 A;  2JMM A;  4O3X B;  4LSH A;  4AYN A;  2R88 A;  3KZI O;  3TZG A;  5TIS O;  4GHB A;  4C4V B;  4C4V A;  3QRC A;  5DL5 A;  5EE2 A;  5FVN A;  3UPG A;  3WU2 O;  3EMN X;  4FQE A;  3T0S A;  1IZN A;  3UU2 A;  1H6S 1; 
#chains in the Genus database with same CATH homology
 4PR7 A;  4CTD A;  2X9K A;  2WVP A;  2F1C X;  2WJR A;  2WJQ A;  2IWW A;  2JQY A;  4FQE A;  2IWV A; 
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