2X27 | Genus

Total Genus 55

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	55
sequence length	212
structure length	209
Chain Sequence	DIQGHKAGDFIIRGGFATVDPDDSSSDIKLDGAKQRGTKATVDSDTQLGLTFTYMFADKWGVELVAATPFNHQVDVKGLLDGKLADIKQLPPTLLLQYYPMGGTNSAFQPYGGLGVNYTTFFDEDLASNRKAQGFSSMKLQDSWGLAGELGFDYMLNEHALFNMAVWYMDIDTKASINGPSALGVNKTKVDVDVDPWVYMIGFGYKFHA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Membrane protein
source organism	Pseudomonas aeruginosa
publication title	The Crystal Structure of Oprg from Pseudomonas Aeruginosa, a Potential Channel for Transport of Hydrophobic Molecules Across the Outer Membrane. pubmed doi rcsb
molecule keywords	OUTER MEMBRANE PROTEIN OPRG
total genus	55
structure length	209
sequence length	212
ec nomenclature
pdb deposition date	2010-01-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
X	PF03922	OmpW	OmpW family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.20	Mainly Beta	Beta Barrel	Porin	Porin	2x27X00

2M06A 2JMMA 1QJ8A 3QRAA 2F1VA 1P4TA 1Q9FA 2MNHA 1MM5A 3QRCA 3G7GA 1QJ9A 2LHFA 2X27X 2ERVA 2MHLA 1BXWA 2N2LA 4PUXA 2N2MA 3C5OA 3GP6A 1QJPA 2K0LA 1THQA 1MM4A 1G90A 4RLCA 1ORMA 1Q9GA 2F1TA 2GE4A 2M07A
chains in the Genus database with same CATH superfamily

4RJXA 5E79O 3VZUX 5D5DA 4FESA 2OMFA 4O3ZA 3WI5A 1QJ8A 3VY9X 4G75A 2XE5A 2R4OA 3QRAA 2F1VA 1P4TA 4C4VB 5H2FO 4LSEA 3PRNA 3UPGA 2XE3A 2IWWA 1MM5A 3V8UA 2W81C 4FZLA 3K19A 4IL6O 3SY9A 4O4XA 1ZHZA 5DL8A 1QJ9A 1ZHTA 2ZLDA 4RLBA 3VE2A 5B66O 8PRNA 4GCSA 3FYXA 2LFUA 3UU2A 3AA0A 4C4VA 3BRYA 4FRXA 2XG6A 2PRNA 4U9CA 5PRNA 1MPFA 3PQSA 5G3AA 3SYBA 1IZNB 3EMNX 4C69X 1YS5A 4FUVA 4KR8A 4LSFA 3VY8X 4AYNA 3C5OA 4FZMA 2O4VA 1T1LA 2XTRA 1OSMA 1QJPA 3HWBA 2K0LA 4AKRA 3TZGA 1HXTA 1GFNA 3T20A 4O3WA 3PQUA 2ODJA 4RJWA 3SZVA 1GFQA 5DL5A 3DA4A 1Q9GA 3AA7B 3KVDD 1IZNA 2FGRA 5AFUK 4GHBA 3T24A 1T16A 2R88A 4K3BA 5B5EO 3LK2B 3HW9A 3PF1A 4O4UA 2XTQA 4XNKA 3DWOX 3LK41 2JQYA 3AA7A 3QRCA 4N74A 1BT9A 1ZHXA 4QQ1A 4FOZA 3SYSA 2WVPA 3UAQA 5ADXK 2Y7SA 4N58A 2LHFA 2X27X 1PRNA 2ZFGA 2KXPB 3JTYA 2YPVA 3LK2A 3AA1B 3KZIO 3LK3B 3VZTX 3HOLA 3DWNA 4FSOA 5IYUA 2N2LA 2Y0KA 1GFPA 2AXTO 4K3CA 4AFKA 4AZLA 1ZHYA 3BRZA 1HXXA 5DL6A 2N2MA 3GP6A 4D64A 2XE1A 4AYDC 1PHOA 2KXPA 1THQA 3A0HO 3AA1A 4FRTA 4AUIA 4UB8O 2K4TA 3AAEB 1ORMA 3WI4A 4AYMC 4N75A 1H6S1 4D65A 4C00A 5GTHO 1G90A 1E54A 3VZWX 4O49A 2R89A 2JMMA 5TISO 2R4PA 3HOEA 3A2SX 4GCPA 3RBHA 1Q9FA 2MNHA 3AAEA 4LSHA 2Y0LA 3JCUO 1S5LO 3G7GA 2J1NA 3NSGA 4GCQA 4GF4A 2Y2XA 4JFBA 3PGUA 4CTDA 2PORA 5G38A 3AA6B 2ERVA 1HXUA 4FT6A 2WJRA 4E1TA 4AYEC 2MHLA 2F1CX 1GFOA 3T0SA 1BH3A 4G76A 3POUA 5G26A 4AKMA 2XE2A 2XMXA 4KR4A 4Z3TA 3BS0A 3AA6A 5KAFO 1MM4A 3LK3A 4RL9A 3PORA 5DL7A 1GFMA 4KRAA 2F1TA 2IWVA 4O3XB 4E1SA 4F4BA 2GE4A 5GV0A 3VE1A 4D5UA 2Y0HA 2J4UP 4PJ0O 2M06A 3AA0B 4FMSA 5GTIO 4LSIA 4AYID 5JDPA 3WU2O 4JCHA 3DA3A 5T5FA 2R4LA 3AAAB 2FGQX 4BUMX 2X9KA 2YNKA 5AFUL 3SY7A 4AKRB 3DZMA 1OPFA 2R4NA 3LK42 4FSPA 4N59A 4XNLA 4B61A 2WJQA 5FVNA 3O0EA 2W80C 2QTKA 1BXWA 2KC0A 3AAAA 2KZ7B 4PR7A 3A0BO 6PRNA 4O3YA 4PUXA 3SZDA 3PGSA 5ADXL 3POQA 2R8AA 3PGRA 5G39A 5EE2A 1ZHWA 4UB6O 4FZNA 4RLCA 3POXA 4FQEA 2KZ7A 7PRNA 2KDYA 3NJTA 5KAIO 2M07A
chains in the Genus database with same CATH topology

4RJXA 3VZUX 5D5DA 2OMFA 4O3ZA 3WI5A 1QJ8A 3VY9X 4G75A 2XE5A 3QRAA 2F1VA 1P4TA 4LSEA 3PRNA 3UPGA 2XE3A 1MM5A 3V8UA 2W81C 4FZLA 3K19A 3SY9A 4O4XA 1ZHZA 5DL8A 1QJ9A 1ZHTA 2ZLDA 4RLBA 3VE2A 8PRNA 4GCSA 3FYXA 2LFUA 3UU2A 3AA0A 4U9CA 4FRXA 2XG6A 2PRNA 5PRNA 3SYBA 1MPFA 3PQSA 1IZNB 3EMNX 4C69X 1YS5A 4FUVA 4KR8A 4LSFA 3VY8X 4AYNA 3C5OA 4FZMA 2O4VA 2XTRA 3HWBA 1OSMA 1QJPA 2K0LA 4AKRA 3TZGA 1HXTA 1GFNA 3T20A 4O3WA 3PQUA 2ODJA 4RJWA 3SZVA 1GFQA 5DL5A 3DA4A 1Q9GA 3AA7B 3KVDD 1IZNA 2FGRA 5AFUK 4GHBA 3T24A 3LK2B 3HW9A 4O4UA 2XTQA 4XNKA 3LK41 3AA7A 3QRCA 4QQ1A 1BT9A 1ZHXA 3UAQA 4FOZA 3SYSA 5ADXK 2Y7SA 4N58A 2LHFA 2X27X 1PRNA 2ZFGA 2KXPB 3JTYA 2YPVA 3LK2A 3AA1B 3LK3B 3VZTX 3HOLA 4FSOA 5IYUA 2N2LA 2Y0KA 1GFPA 4AZLA 4AFKA 1ZHYA 1HXXA 5DL6A 2N2MA 3GP6A 4D64A 2XE1A 4AYDC 1PHOA 2KXPA 1THQA 3AA1A 4FRTA 4AUIA 2K4TA 3AAEB 1ORMA 3WI4A 4AYMC 1H6S1 4D65A 1G90A 1E54A 3VZWX 4O49A 2JMMA 3HOEA 3A2SX 4GCPA 3RBHA 1Q9FA 2MNHA 3AAEA 4LSHA 2Y0LA 3G7GA 2J1NA 3NSGA 4GCQA 4GF4A 2Y2XA 4JFBA 2PORA 3AA6B 2ERVA 1HXUA 4FT6A 4E1TA 4AYEC 2MHLA 1GFOA 3T0SA 1BH3A 4G76A 3POUA 5G26A 4AKMA 2XE2A 2XMXA 4KR4A 4Z3TA 3AA6A 1MM4A 3LK3A 4RL9A 3PORA 5DL7A 1GFMA 4KRAA 2F1TA 4O3XB 5GV0A 4E1SA 4F4BA 2GE4A 3VE1A 4D5UA 2Y0HA 2J4UP 2M06A 3AA0B 4FMSA 4AYID 4LSIA 5JDPA 4JCHA 3DA3A 5T5FA 3AAAB 2FGQX 4BUMX 2YNKA 5AFUL 3SY7A 4AKRB 4FSPA 1OPFA 3LK42 4N59A 4XNLA 4B61A 5FVNA 3O0EA 2W80C 2QTKA 1BXWA 2KC0A 3AAAA 2KZ7B 6PRNA 4O3YA 4PUXA 3SZDA 5ADXL 3POQA 5EE2A 1ZHWA 4FZNA 4RLCA 3POXA 2KZ7A 7PRNA 2KDYA 4FESA 2M07A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2M06 A;  2JMM A;  1QJ8 A;  3QRA A;  2F1V A;  1P4T A;  1Q9F A;  2MNH A;  1MM5 A;  3QRC A;  3G7G A;  1QJ9 A;  2LHF A;  2X27 X;  2ERV A;  2MHL A;  1BXW A;  2N2L A;  4PUX A;  2N2M A;  3C5O A;  3GP6 A;  1QJP A;  2K0L A;  1THQ A;  1MM4 A;  1G90 A;  4RLC A;  1ORM A;  1Q9G A;  2F1T A;  2GE4 A;  2M07 A; 
#chains in the Genus database with same CATH topology
 4RJX A;  5E79 O;  3VZU X;  5D5D A;  4FES A;  2OMF A;  4O3Z A;  3WI5 A;  1QJ8 A;  3VY9 X;  4G75 A;  2XE5 A;  2R4O A;  3QRA A;  2F1V A;  1P4T A;  4C4V B;  5H2F O;  4LSE A;  3PRN A;  3UPG A;  2XE3 A;  2IWW A;  1MM5 A;  3V8U A;  2W81 C;  4FZL A;  3K19 A;  4IL6 O;  3SY9 A;  4O4X A;  1ZHZ A;  5DL8 A;  1QJ9 A;  1ZHT A;  2ZLD A;  4RLB A;  3VE2 A;  5B66 O;  8PRN A;  4GCS A;  3FYX A;  2LFU A;  3UU2 A;  3AA0 A;  4C4V A;  3BRY A;  4FRX A;  2XG6 A;  2PRN A;  4U9C A;  5PRN A;  1MPF A;  3PQS A;  5G3A A;  3SYB A;  1IZN B;  3EMN X;  4C69 X;  1YS5 A;  4FUV A;  4KR8 A;  4LSF A;  3VY8 X;  4AYN A;  3C5O A;  4FZM A;  2O4V A;  1T1L A;  2XTR A;  1OSM A;  1QJP A;  3HWB A;  2K0L A;  4AKR A;  3TZG A;  1HXT A;  1GFN A;  3T20 A;  4O3W A;  3PQU A;  2ODJ A;  4RJW A;  3SZV A;  1GFQ A;  5DL5 A;  3DA4 A;  1Q9G A;  3AA7 B;  3KVD D;  1IZN A;  2FGR A;  5AFU K;  4GHB A;  3T24 A;  1T16 A;  2R88 A;  4K3B A;  5B5E O;  3LK2 B;  3HW9 A;  3PF1 A;  4O4U A;  2XTQ A;  4XNK A;  3DWO X;  3LK4 1;  2JQY A;  3AA7 A;  3QRC A;  4N74 A;  1BT9 A;  1ZHX A;  4QQ1 A;  4FOZ A;  3SYS A;  2WVP A;  3UAQ A;  5ADX K;  2Y7S A;  4N58 A;  2LHF A;  2X27 X;  1PRN A;  2ZFG A;  2KXP B;  3JTY A;  2YPV A;  3LK2 A;  3AA1 B;  3KZI O;  3LK3 B;  3VZT X;  3HOL A;  3DWN A;  4FSO A;  5IYU A;  2N2L A;  2Y0K A;  1GFP A;  2AXT O;  4K3C A;  4AFK A;  4AZL A;  1ZHY A;  3BRZ A;  1HXX A;  5DL6 A;  2N2M A;  3GP6 A;  4D64 A;  2XE1 A;  4AYD C;  1PHO A;  2KXP A;  1THQ A;  3A0H O;  3AA1 A;  4FRT A;  4AUI A;  4UB8 O;  2K4T A;  3AAE B;  1ORM A;  3WI4 A;  4AYM C;  4N75 A;  1H6S 1;  4D65 A;  4C00 A;  5GTH O;  1G90 A;  1E54 A;  3VZW X;  4O49 A;  2R89 A;  2JMM A;  5TIS O;  2R4P A;  3HOE A;  3A2S X;  4GCP A;  3RBH A;  1Q9F A;  2MNH A;  3AAE A;  4LSH A;  2Y0L A;  3JCU O;  1S5L O;  3G7G A;  2J1N A;  3NSG A;  4GCQ A;  4GF4 A;  2Y2X A;  4JFB A;  3PGU A;  4CTD A;  2POR A;  5G38 A;  3AA6 B;  2ERV A;  1HXU A;  4FT6 A;  2WJR A;  4E1T A;  4AYE C;  2MHL A;  2F1C X;  1GFO A;  3T0S A;  1BH3 A;  4G76 A;  3POU A;  5G26 A;  4AKM A;  2XE2 A;  2XMX A;  4KR4 A;  4Z3T A;  3BS0 A;  3AA6 A;  5KAF O;  1MM4 A;  3LK3 A;  4RL9 A;  3POR A;  5DL7 A;  1GFM A;  4KRA A;  2F1T A;  2IWV A;  4O3X B;  4E1S A;  4F4B A;  2GE4 A;  5GV0 A;  3VE1 A;  4D5U A;  2Y0H A;  2J4U P;  4PJ0 O;  2M06 A;  3AA0 B;  4FMS A;  5GTI O;  4LSI A;  4AYI D;  5JDP A;  3WU2 O;  4JCH A;  3DA3 A;  5T5F A;  2R4L A;  3AAA B;  2FGQ X;  4BUM X;  2X9K A;  2YNK A;  5AFU L;  3SY7 A;  4AKR B;  3DZM A;  1OPF A;  2R4N A;  3LK4 2;  4FSP A;  4N59 A;  4XNL A;  4B61 A;  2WJQ A;  5FVN A;  3O0E A;  2W80 C;  2QTK A;  1BXW A;  2KC0 A;  3AAA A;  2KZ7 B;  4PR7 A;  3A0B O;  6PRN A;  4O3Y A;  4PUX A;  3SZD A;  3PGS A;  5ADX L;  3POQ A;  2R8A A;  3PGR A;  5G39 A;  5EE2 A;  1ZHW A;  4UB6 O;  4FZN A;  4RLC A;  3POX A;  4FQE A;  2KZ7 A;  7PRN A;  2KDY A;  3NJT A;  5KAI O;  2M07 A; 
#chains in the Genus database with same CATH homology
 4RJX A;  3VZU X;  5D5D A;  2OMF A;  4O3Z A;  3WI5 A;  1QJ8 A;  3VY9 X;  4G75 A;  2XE5 A;  3QRA A;  2F1V A;  1P4T A;  4LSE A;  3PRN A;  3UPG A;  2XE3 A;  1MM5 A;  3V8U A;  2W81 C;  4FZL A;  3K19 A;  3SY9 A;  4O4X A;  1ZHZ A;  5DL8 A;  1QJ9 A;  1ZHT A;  2ZLD A;  4RLB A;  3VE2 A;  8PRN A;  4GCS A;  3FYX A;  2LFU A;  3UU2 A;  3AA0 A;  4U9C A;  4FRX A;  2XG6 A;  2PRN A;  5PRN A;  3SYB A;  1MPF A;  3PQS A;  1IZN B;  3EMN X;  4C69 X;  1YS5 A;  4FUV A;  4KR8 A;  4LSF A;  3VY8 X;  4AYN A;  3C5O A;  4FZM A;  2O4V A;  2XTR A;  3HWB A;  1OSM A;  1QJP A;  2K0L A;  4AKR A;  3TZG A;  1HXT A;  1GFN A;  3T20 A;  4O3W A;  3PQU A;  2ODJ A;  4RJW A;  3SZV A;  1GFQ A;  5DL5 A;  3DA4 A;  1Q9G A;  3AA7 B;  3KVD D;  1IZN A;  2FGR A;  5AFU K;  4GHB A;  3T24 A;  3LK2 B;  3HW9 A;  4O4U A;  2XTQ A;  4XNK A;  3LK4 1;  3AA7 A;  3QRC A;  4QQ1 A;  1BT9 A;  1ZHX A;  3UAQ A;  4FOZ A;  3SYS A;  5ADX K;  2Y7S A;  4N58 A;  2LHF A;  2X27 X;  1PRN A;  2ZFG A;  2KXP B;  3JTY A;  2YPV A;  3LK2 A;  3AA1 B;  3LK3 B;  3VZT X;  3HOL A;  4FSO A;  5IYU A;  2N2L A;  2Y0K A;  1GFP A;  4AZL A;  4AFK A;  1ZHY A;  1HXX A;  5DL6 A;  2N2M A;  3GP6 A;  4D64 A;  2XE1 A;  4AYD C;  1PHO A;  2KXP A;  1THQ A;  3AA1 A;  4FRT A;  4AUI A;  2K4T A;  3AAE B;  1ORM A;  3WI4 A;  4AYM C;  1H6S 1;  4D65 A;  1G90 A;  1E54 A;  3VZW X;  4O49 A;  2JMM A;  3HOE A;  3A2S X;  4GCP A;  3RBH A;  1Q9F A;  2MNH A;  3AAE A;  4LSH A;  2Y0L A;  3G7G A;  2J1N A;  3NSG A;  4GCQ A;  4GF4 A;  2Y2X A;  4JFB A;  2POR A;  3AA6 B;  2ERV A;  1HXU A;  4FT6 A;  4E1T A;  4AYE C;  2MHL A;  1GFO A;  3T0S A;  1BH3 A;  4G76 A;  3POU A;  5G26 A;  4AKM A;  2XE2 A;  2XMX A;  4KR4 A;  4Z3T A;  3AA6 A;  1MM4 A;  3LK3 A;  4RL9 A;  3POR A;  5DL7 A;  1GFM A;  4KRA A;  2F1T A;  4O3X B;  5GV0 A;  4E1S A;  4F4B A;  2GE4 A;  3VE1 A;  4D5U A;  2Y0H A;  2J4U P;  2M06 A;  3AA0 B;  4FMS A;  4AYI D;  4LSI A;  5JDP A;  4JCH A;  3DA3 A;  5T5F A;  3AAA B;  2FGQ X;  4BUM X;  2YNK A;  5AFU L;  3SY7 A;  4AKR B;  4FSP A;  1OPF A;  3LK4 2;  4N59 A;  4XNL A;  4B61 A;  5FVN A;  3O0E A;  2W80 C;  2QTK A;  1BXW A;  2KC0 A;  3AAA A;  2KZ7 B;  6PRN A;  4O3Y A;  4PUX A;  3SZD A;  5ADX L;  3POQ A;  5EE2 A;  1ZHW A;  4FZN A;  4RLC A;  3POX A;  2KZ7 A;  7PRN A;  2KDY A;  4FES A;  2M07 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2X27X

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations