2ZLD | Genus

Total Genus 95

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	95
sequence length	340
structure length	339
Chain Sequence	AEIYNKDGNKVDLYGKAVGLHYFSKGGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Membrane protein
source organism	Escherichia coli
publication title	Crystal structures of the OmpF porin: function in a colicin translocon. pubmed doi rcsb
molecule keywords	Outer membrane protein F
total genus	95
structure length	339
sequence length	340
chains with identical sequence	B
ec nomenclature
pdb deposition date	2008-04-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00267	Porin_1	Gram-negative porin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	2zldA00

2Y0HA 2Y2XA 3HWBA 2ZFGA 4RJWA 4LSHA 2FGRA 2K4TA 3A2SX 3POUA 4GCPA 1GFOA 2OMFA 3NSGA 5DL8A 3HW9A 3SYSA 4KR8A 1H6S1 4FMSA 3VY9X 3POQA 4C69X 4LSFA 3UPGA 5DL6A 3WI4A 2FGQX 1HXXA 1MPFA 4FRXA 2XG6A 1OPFA 3K19A 2PRNA 1PRNA 3SZDA 8PRNA 1HXTA 1GFQA 2Y0LA 5JDPA 4D5UA 1HXUA 2ODJA 2PORA 3SZVA 3O0EA 4BUMX 5PRNA 3SY9A 5DL5A 4AUIA 2Y0KA 3JTYA 4LSEA 4FRTA 2J4UP 3EMNX 2O4VA 5FVNA 2XE1A 2ZLDA 1BT9A 4FSPA 4KRAA 6PRNA 3SY7A 1BH3A 3UU2A 3PORA 3SYBA 3FYXA 3VZWX 4GCQA 3T0SA 2XE3A 2J1NA 4FT6A 4FSOA 3VZTX 1GFMA 5DL7A 3VY8X 2XE2A 3POXA 4GCSA 1PHOA 4D64A 1GFPA 1GFNA 3WI5A 3PRNA 4LSIA 1OSMA 3T24A 4JFBA 7PRNA 2QTKA 3VZUX 3T20A 4D65A 4KR4A 1E54A 4RJXA 2XE5A 4FOZA
chains in the Genus database with same CATH superfamily

2KXPA 3AA0A 4PR7A 4AYDC 2Y0HA 2K0LA 2Y2XA 3DA4A 3HWBA 2R88A 2F1VA 1S5LO 2ZFGA 1IZNB 1ZHWA 4RJXA 4RLCA 4RJWA 4LSHA 3PGRA 4N58A 5TISO 4AZLA 2FGRA 4AKMA 1YS5A 4N74A 2K4TA 2XMXA 3A2SX 3POUA 4E1TA 4GCPA 1GFOA 2OMFA 3NSGA 3QRAA 2WJQA 4FZMA 3AAAB 5DL8A 2R8AA 4PJ0O 2N2MA 1QJPA 2J4UP 4AYMC 1P4TA 3HW9A 3SYSA 4KR8A 1THQA 3KZIO 1H6S1 3AA1A 4FQEA 2LFUA 4FMSA 4AYEC 3VY9X 3WU2O 3LK41 4AKRA 2WJRA 5GV0A 2F1TA 4C00A 2KC0A 3BS0A 3POQA 4C69X 2YNKA 2JMMA 4G76A 4LSFA 5DL6A 5G3AA 3UAQA 3WI4A 5B5EO 2FGQX 3UPGA 1HXXA 4K3CA 1MPFA 4FRXA 2XG6A 2F1CX 1OPFA 3BRYA 3HOEA 3AA7B 4N59A 3LK3B 4AYID 4PUXA 2R4NA 3A0BO 4XNKA 3K19A 2PRNA 1PRNA 3AA0B 4O3XB 1Q9FA 3AA6B 4RL9A 3SZDA 4E1SA 8PRNA 4UB8O 1G90A 3NJTA 3AAEB 3DZMA 2R4PA 4AFKA 4Z3TA 4AYNA 1ZHTA 1HXTA 1GFQA 2Y0LA 3PQSA 1IZNA 2W80C 3A0HO 2AXTO 4FZNA 1T1LA 4D5UA 5JDPA 1HXUA 3LK2A 5D5DA 4FUVA 2ODJA 3BRZA 2KZ7B 2PORA 3SZVA 5EE2A 3VE1A 3O0EA 5AFUL 2MNHA 4BUMX 2M07A 4B61A 5PRNA 1Q9GA 1QJ9A 2XTRA 5ADXL 5GTIO 3AAAA 3PGSA 5DL5A 5T5FA 3SY9A 5KAFO 3V8UA 4FESA 4AUIA 4C4VB 2X27X 2JQYA 5KAIO 5E79O 2Y0KA 3AA1B 3DA3A 1ZHYA 3DWNA 3JTYA 3QRCA 4JCHA 4LSEA 4U9CA 4FRTA 4K3BA 3RBHA 1BXWA 4O4UA 3EMNX 3VE2A 2KXPB 2R4LA 5AFUK 2O4VA 2W81C 3LK42 4N75A 2ERVA 3DWOX 5FVNA 4O3WA 5ADXK 2XE1A 2ZLDA 5H2FO 1BT9A 2X9KA 3G7GA 3KVDD 3JCUO 4FSPA 3PQUA 4G75A 4KRAA 4O3ZA 4XNLA 3SY7A 1ORMA 6PRNA 1ZHZA 1BH3A 3GP6A 4FZLA 4UB6O 3C5OA 4GF4A 4O3YA 3UU2A 3PORA 4FOZA 2N2LA 3SYBA 3AA7A 2Y7SA 3LK3A 2XE5A 4GHBA 3FYXA 5IYUA 3AA6A 3VZWX 4GCQA 3T0SA 5G38A 3PF1A 3AAEA 5G39A 2KDYA 2XE3A 4O49A 2MHLA 2R89A 2XTQA 2M06A 2J1NA 1MM5A 3LK2B 4FSOA 1GFMA 4FT6A 3VZTX 2LHFA 5DL7A 3VY8X 2XE2A 3POXA 5GTHO 4F4BA 4GCSA 1PHOA 1QJ8A 5B66O 4D64A 1MM4A 1GFPA 1GFNA 1T16A 2WVPA 4AKRB 2KZ7A 3WI5A 3PRNA 4LSIA 1OSMA 1ZHXA 4O4XA 3T24A 4QQ1A 4JFBA 3PGUA 4RLBA 4C4VA 7PRNA 4CTDA 2IWWA 2QTKA 3VZUX 3T20A 4D65A 2YPVA 4KR4A 3HOLA 3TZGA 1E54A 5G26A 2GE4A 2R4OA 4IL6O 2IWVA
chains in the Genus database with same CATH topology

2KXPA 3AA0A 4AYDC 2Y0HA 2K0LA 2Y2XA 3DA4A 3HWBA 2F1VA 2ZFGA 1IZNB 1ZHWA 4RJXA 4RLCA 4RJWA 4LSHA 4N58A 4AZLA 2FGRA 4AKMA 1YS5A 2K4TA 2XMXA 3A2SX 3POUA 4E1TA 4GCPA 1GFOA 2OMFA 3NSGA 3QRAA 4FZMA 3AAAB 5DL8A 2N2MA 1QJPA 4AYMC 1P4TA 3HW9A 3SYSA 4KR8A 1THQA 1H6S1 3AA1A 2LFUA 4FMSA 4AYEC 3VY9X 4AKRA 3LK41 5GV0A 2F1TA 2KC0A 3POQA 4C69X 2YNKA 2JMMA 4G76A 4LSFA 5DL6A 3UAQA 3WI4A 3UPGA 2FGQX 1HXXA 1MPFA 4FRXA 2XG6A 1OPFA 4AYID 3HOEA 3AA7B 4N59A 3LK3B 4PUXA 4XNKA 3K19A 2PRNA 1PRNA 3AA0B 4O3XB 1Q9FA 3AA6B 4RL9A 3SZDA 4E1SA 8PRNA 1G90A 3AAEB 4Z3TA 4AFKA 4AYNA 1ZHTA 1HXTA 1GFQA 2Y0LA 3PQSA 1IZNA 2W80C 4FZNA 5JDPA 4D5UA 1HXUA 3LK2A 5D5DA 4FUVA 2ODJA 2KZ7B 2PORA 3SZVA 5EE2A 3VE1A 3O0EA 5AFUL 2MNHA 4BUMX 2M07A 4B61A 5PRNA 1Q9GA 1QJ9A 2XTRA 5ADXL 3AAAA 5DL5A 5T5FA 3SY9A 3V8UA 4AUIA 4FESA 2X27X 2Y0KA 3AA1B 3DA3A 1ZHYA 3JTYA 3QRCA 4JCHA 4LSEA 4U9CA 4FRTA 3RBHA 2J4UP 1BXWA 4O4UA 3EMNX 3VE2A 2KXPB 5AFUK 2O4VA 2W81C 3LK42 2ERVA 5FVNA 4O3WA 5ADXK 2XE1A 2ZLDA 1BT9A 3G7GA 3KVDD 4FSPA 4G75A 4KRAA 3PQUA 4O3ZA 4XNLA 6PRNA 3SY7A 1ORMA 1ZHZA 1BH3A 3GP6A 4FZLA 3C5OA 4GF4A 4O3YA 3UU2A 3PORA 2N2LA 3SYBA 3AA7A 2Y7SA 3LK3A 4GHBA 3FYXA 5IYUA 3AA6A 3VZWX 4GCQA 3T0SA 3AAEA 2KDYA 2XE3A 4O49A 2MHLA 2XTQA 2M06A 2J1NA 1MM5A 3LK2B 4FSOA 1GFMA 4FT6A 3VZTX 2LHFA 5DL7A 3VY8X 2XE2A 3POXA 4F4BA 4GCSA 1PHOA 1QJ8A 4D64A 1MM4A 1GFPA 1GFNA 4AKRB 2KZ7A 3WI5A 3PRNA 4LSIA 1OSMA 1ZHXA 4O4XA 3T24A 4QQ1A 4JFBA 4RLBA 7PRNA 2QTKA 3VZUX 3T20A 4D65A 2YPVA 4KR4A 3HOLA 3TZGA 1E54A 5G26A 2GE4A 2XE5A 4FOZA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2Y0H A;  2Y2X A;  3HWB A;  2ZFG A;  4RJW A;  4LSH A;  2FGR A;  2K4T A;  3A2S X;  3POU A;  4GCP A;  1GFO A;  2OMF A;  3NSG A;  5DL8 A;  3HW9 A;  3SYS A;  4KR8 A;  1H6S 1;  4FMS A;  3VY9 X;  3POQ A;  4C69 X;  4LSF A;  3UPG A;  5DL6 A;  3WI4 A;  2FGQ X;  1HXX A;  1MPF A;  4FRX A;  2XG6 A;  1OPF A;  3K19 A;  2PRN A;  1PRN A;  3SZD A;  8PRN A;  1HXT A;  1GFQ A;  2Y0L A;  5JDP A;  4D5U A;  1HXU A;  2ODJ A;  2POR A;  3SZV A;  3O0E A;  4BUM X;  5PRN A;  3SY9 A;  5DL5 A;  4AUI A;  2Y0K A;  3JTY A;  4LSE A;  4FRT A;  2J4U P;  3EMN X;  2O4V A;  5FVN A;  2XE1 A;  2ZLD A;  1BT9 A;  4FSP A;  4KRA A;  6PRN A;  3SY7 A;  1BH3 A;  3UU2 A;  3POR A;  3SYB A;  3FYX A;  3VZW X;  4GCQ A;  3T0S A;  2XE3 A;  2J1N A;  4FT6 A;  4FSO A;  3VZT X;  1GFM A;  5DL7 A;  3VY8 X;  2XE2 A;  3POX A;  4GCS A;  1PHO A;  4D64 A;  1GFP A;  1GFN A;  3WI5 A;  3PRN A;  4LSI A;  1OSM A;  3T24 A;  4JFB A;  7PRN A;  2QTK A;  3VZU X;  3T20 A;  4D65 A;  4KR4 A;  1E54 A;  4RJX A;  2XE5 A;  4FOZ A; 
#chains in the Genus database with same CATH topology
 2KXP A;  3AA0 A;  4PR7 A;  4AYD C;  2Y0H A;  2K0L A;  2Y2X A;  3DA4 A;  3HWB A;  2R88 A;  2F1V A;  1S5L O;  2ZFG A;  1IZN B;  1ZHW A;  4RJX A;  4RLC A;  4RJW A;  4LSH A;  3PGR A;  4N58 A;  5TIS O;  4AZL A;  2FGR A;  4AKM A;  1YS5 A;  4N74 A;  2K4T A;  2XMX A;  3A2S X;  3POU A;  4E1T A;  4GCP A;  1GFO A;  2OMF A;  3NSG A;  3QRA A;  2WJQ A;  4FZM A;  3AAA B;  5DL8 A;  2R8A A;  4PJ0 O;  2N2M A;  1QJP A;  2J4U P;  4AYM C;  1P4T A;  3HW9 A;  3SYS A;  4KR8 A;  1THQ A;  3KZI O;  1H6S 1;  3AA1 A;  4FQE A;  2LFU A;  4FMS A;  4AYE C;  3VY9 X;  3WU2 O;  3LK4 1;  4AKR A;  2WJR A;  5GV0 A;  2F1T A;  4C00 A;  2KC0 A;  3BS0 A;  3POQ A;  4C69 X;  2YNK A;  2JMM A;  4G76 A;  4LSF A;  5DL6 A;  5G3A A;  3UAQ A;  3WI4 A;  5B5E O;  2FGQ X;  3UPG A;  1HXX A;  4K3C A;  1MPF A;  4FRX A;  2XG6 A;  2F1C X;  1OPF A;  3BRY A;  3HOE A;  3AA7 B;  4N59 A;  3LK3 B;  4AYI D;  4PUX A;  2R4N A;  3A0B O;  4XNK A;  3K19 A;  2PRN A;  1PRN A;  3AA0 B;  4O3X B;  1Q9F A;  3AA6 B;  4RL9 A;  3SZD A;  4E1S A;  8PRN A;  4UB8 O;  1G90 A;  3NJT A;  3AAE B;  3DZM A;  2R4P A;  4AFK A;  4Z3T A;  4AYN A;  1ZHT A;  1HXT A;  1GFQ A;  2Y0L A;  3PQS A;  1IZN A;  2W80 C;  3A0H O;  2AXT O;  4FZN A;  1T1L A;  4D5U A;  5JDP A;  1HXU A;  3LK2 A;  5D5D A;  4FUV A;  2ODJ A;  3BRZ A;  2KZ7 B;  2POR A;  3SZV A;  5EE2 A;  3VE1 A;  3O0E A;  5AFU L;  2MNH A;  4BUM X;  2M07 A;  4B61 A;  5PRN A;  1Q9G A;  1QJ9 A;  2XTR A;  5ADX L;  5GTI O;  3AAA A;  3PGS A;  5DL5 A;  5T5F A;  3SY9 A;  5KAF O;  3V8U A;  4FES A;  4AUI A;  4C4V B;  2X27 X;  2JQY A;  5KAI O;  5E79 O;  2Y0K A;  3AA1 B;  3DA3 A;  1ZHY A;  3DWN A;  3JTY A;  3QRC A;  4JCH A;  4LSE A;  4U9C A;  4FRT A;  4K3B A;  3RBH A;  1BXW A;  4O4U A;  3EMN X;  3VE2 A;  2KXP B;  2R4L A;  5AFU K;  2O4V A;  2W81 C;  3LK4 2;  4N75 A;  2ERV A;  3DWO X;  5FVN A;  4O3W A;  5ADX K;  2XE1 A;  2ZLD A;  5H2F O;  1BT9 A;  2X9K A;  3G7G A;  3KVD D;  3JCU O;  4FSP A;  3PQU A;  4G75 A;  4KRA A;  4O3Z A;  4XNL A;  3SY7 A;  1ORM A;  6PRN A;  1ZHZ A;  1BH3 A;  3GP6 A;  4FZL A;  4UB6 O;  3C5O A;  4GF4 A;  4O3Y A;  3UU2 A;  3POR A;  4FOZ A;  2N2L A;  3SYB A;  3AA7 A;  2Y7S A;  3LK3 A;  2XE5 A;  4GHB A;  3FYX A;  5IYU A;  3AA6 A;  3VZW X;  4GCQ A;  3T0S A;  5G38 A;  3PF1 A;  3AAE A;  5G39 A;  2KDY A;  2XE3 A;  4O49 A;  2MHL A;  2R89 A;  2XTQ A;  2M06 A;  2J1N A;  1MM5 A;  3LK2 B;  4FSO A;  1GFM A;  4FT6 A;  3VZT X;  2LHF A;  5DL7 A;  3VY8 X;  2XE2 A;  3POX A;  5GTH O;  4F4B A;  4GCS A;  1PHO A;  1QJ8 A;  5B66 O;  4D64 A;  1MM4 A;  1GFP A;  1GFN A;  1T16 A;  2WVP A;  4AKR B;  2KZ7 A;  3WI5 A;  3PRN A;  4LSI A;  1OSM A;  1ZHX A;  4O4X A;  3T24 A;  4QQ1 A;  4JFB A;  3PGU A;  4RLB A;  4C4V A;  7PRN A;  4CTD A;  2IWW A;  2QTK A;  3VZU X;  3T20 A;  4D65 A;  2YPV A;  4KR4 A;  3HOL A;  3TZG A;  1E54 A;  5G26 A;  2GE4 A;  2R4O A;  4IL6 O;  2IWV A; 
#chains in the Genus database with same CATH homology
 2KXP A;  3AA0 A;  4AYD C;  2Y0H A;  2K0L A;  2Y2X A;  3DA4 A;  3HWB A;  2F1V A;  2ZFG A;  1IZN B;  1ZHW A;  4RJX A;  4RLC A;  4RJW A;  4LSH A;  4N58 A;  4AZL A;  2FGR A;  4AKM A;  1YS5 A;  2K4T A;  2XMX A;  3A2S X;  3POU A;  4E1T A;  4GCP A;  1GFO A;  2OMF A;  3NSG A;  3QRA A;  4FZM A;  3AAA B;  5DL8 A;  2N2M A;  1QJP A;  4AYM C;  1P4T A;  3HW9 A;  3SYS A;  4KR8 A;  1THQ A;  1H6S 1;  3AA1 A;  2LFU A;  4FMS A;  4AYE C;  3VY9 X;  4AKR A;  3LK4 1;  5GV0 A;  2F1T A;  2KC0 A;  3POQ A;  4C69 X;  2YNK A;  2JMM A;  4G76 A;  4LSF A;  5DL6 A;  3UAQ A;  3WI4 A;  3UPG A;  2FGQ X;  1HXX A;  1MPF A;  4FRX A;  2XG6 A;  1OPF A;  4AYI D;  3HOE A;  3AA7 B;  4N59 A;  3LK3 B;  4PUX A;  4XNK A;  3K19 A;  2PRN A;  1PRN A;  3AA0 B;  4O3X B;  1Q9F A;  3AA6 B;  4RL9 A;  3SZD A;  4E1S A;  8PRN A;  1G90 A;  3AAE B;  4Z3T A;  4AFK A;  4AYN A;  1ZHT A;  1HXT A;  1GFQ A;  2Y0L A;  3PQS A;  1IZN A;  2W80 C;  4FZN A;  5JDP A;  4D5U A;  1HXU A;  3LK2 A;  5D5D A;  4FUV A;  2ODJ A;  2KZ7 B;  2POR A;  3SZV A;  5EE2 A;  3VE1 A;  3O0E A;  5AFU L;  2MNH A;  4BUM X;  2M07 A;  4B61 A;  5PRN A;  1Q9G A;  1QJ9 A;  2XTR A;  5ADX L;  3AAA A;  5DL5 A;  5T5F A;  3SY9 A;  3V8U A;  4AUI A;  4FES A;  2X27 X;  2Y0K A;  3AA1 B;  3DA3 A;  1ZHY A;  3JTY A;  3QRC A;  4JCH A;  4LSE A;  4U9C A;  4FRT A;  3RBH A;  2J4U P;  1BXW A;  4O4U A;  3EMN X;  3VE2 A;  2KXP B;  5AFU K;  2O4V A;  2W81 C;  3LK4 2;  2ERV A;  5FVN A;  4O3W A;  5ADX K;  2XE1 A;  2ZLD A;  1BT9 A;  3G7G A;  3KVD D;  4FSP A;  4G75 A;  4KRA A;  3PQU A;  4O3Z A;  4XNL A;  6PRN A;  3SY7 A;  1ORM A;  1ZHZ A;  1BH3 A;  3GP6 A;  4FZL A;  3C5O A;  4GF4 A;  4O3Y A;  3UU2 A;  3POR A;  2N2L A;  3SYB A;  3AA7 A;  2Y7S A;  3LK3 A;  4GHB A;  3FYX A;  5IYU A;  3AA6 A;  3VZW X;  4GCQ A;  3T0S A;  3AAE A;  2KDY A;  2XE3 A;  4O49 A;  2MHL A;  2XTQ A;  2M06 A;  2J1N A;  1MM5 A;  3LK2 B;  4FSO A;  1GFM A;  4FT6 A;  3VZT X;  2LHF A;  5DL7 A;  3VY8 X;  2XE2 A;  3POX A;  4F4B A;  4GCS A;  1PHO A;  1QJ8 A;  4D64 A;  1MM4 A;  1GFP A;  1GFN A;  4AKR B;  2KZ7 A;  3WI5 A;  3PRN A;  4LSI A;  1OSM A;  1ZHX A;  4O4X A;  3T24 A;  4QQ1 A;  4JFB A;  4RLB A;  7PRN A;  2QTK A;  3VZU X;  3T20 A;  4D65 A;  2YPV A;  4KR4 A;  3HOL A;  3TZG A;  1E54 A;  5G26 A;  2GE4 A;  2XE5 A;  4FOZ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2ZLDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations