3A0HO

Crystal structure of i-substituted photosystem ii complex
Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
242
structure length
242
Chain Sequence
TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV13 (197-200)S3 (75-80)TII1 (36-39)S15 (237-246)TIV1 (37-40)TIV2 (40-43)TIV21 (232-235)TIV20 (231-234)TVIII1 (42-45)O1 (45-70)S2 (65-71)TIV3 (49-52)S14 (223-230)TIV4 (59-62)S1 (56-57)S6 (104-114)S7 (118-122)TII2 (98-101)S10 (141-144)S9 (132-135)TIV7 (136-139)TIV11 (189-192)TII4 (148-151)S12 (161-162)S11 (152-155)TIV8 (156-159)TII5 (184-187)TIV9 (163-166)TVIII2 (176-179)TIV18 (210-213)TIV16 (208-211)TII6 (205-208)TIV15 (207-210)TIV17 (209-212)TIV19 (211-214)AH1 (33-36)S5 (95-96)S4 (90-93)S8 (125-126)TII3 (114-117)S13 (167-171)TIV14 (206-209)TI2 (200-203)TIV10 (179-182)Updating...
connected with : NaN
molecule tags Electron transport
publication title Location of chloride and its possible functions in oxygen-evolving photosystem II revealed by X-ray crystallography
pubmed doi rcsb
molecule keywords Photosystem Q(B) protein
total genus 28
structure length 242
sequence length 242
chains with identical sequence o
ec nomenclature
pdb deposition date 2009-03-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 3a0hO01
3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domain 3a0hO02
5TISO 5KAFO 3KZIO 3A0HO 3JCUO 3A0BO 5G38A 5H2FO 2AXTO 4UB6O 5G39A 4PJ0O 5GTIO 5B66O 5B5EO 5KAIO 5G3AA 3WU2O 5GTHO 5E79O 4UB8O 4IL6O 1S5LO
chains in the Genus database with same CATH superfamily
4FOZA 4FSOA 3SYBA 4N59A 5KAFO 3KVDD 2X9KA 4D64A 2KZ7B 3A0BO 3AA1B 4D65A 2XE5A 4PUXA 2ZLDA 3AA6B 4FRXA 4AYID 2KXPB 2AXTO 3DWOX 2GE4A 2Y7SA 4N75A 4O3ZA 3UU2A 4GCQA 4UB6O 5G39A 5IYUA 4AYMC 2Y0LA 3FYXA 1BH3A 4AYEC 1THQA 3SYSA 1QJPA 1HXUA 3UAQA 3HOLA 4LSHA 3SZDA 4C4VB 4CTDA 5GTHO 4O4UA 2K4TA 4AYNA 1E54A 2F1VA 3QRAA 3PGSA 1GFOA 5DL5A 2IWWA 3HW9A 2F1TA 3LK41 3POXA 3EMNX 2W81C 1OSMA 3SY9A 4C00A 4LSEA 4IL6O 3VY9X 3TZGA 1S5LO 3G7GA 2R88A 3LK2A 4FQEA 4GCSA 1MPFA 4O3WA 2JQYA 4RLBA 5DL6A 3V8UA 2Y0KA 2XE1A 2M06A 2R4NA 3BS0A 4KR8A 8PRNA 4LSIA 3AA0A 1H6S1 3DA4A 4FESA 4O3YA 1ZHWA 4FZNA 1YS5A 1ORMA 5D5DA 5G26A 5H2FO 3JTYA 2M07A 4AYDC 4FRTA 4GHBA 4JCHA 4PJ0O 1ZHYA 5PRNA 2K0LA 2X27X 5GTIO 2ERVA 3A2SX 7PRNA 1BT9A 3PGRA 5JDPA 4JFBA 2W80C 5KAIO 2R4OA 5G3AA 3RBHA 2R4PA 3AAAA 3POUA 1P4TA 3LK2B 1ZHTA 4XNKA 4LSFA 3T20A 2OMFA 1PRNA 2Y2XA 2WVPA 3QRCA 4FZMA 4N58A 3DA3A 2XTRA 4B61A 4AKMA 3AAEB 3AA0B 2KDYA 3AA7A 4KR4A 4O3XB 4UB8O 5AFUL 3UPGA 2R8AA 2R89A 3PF1A 3LK3A 5TISO 2WJRA 1ZHXA 1T1LA 1PHOA 4FSPA 4AFKA 1OPFA 2O4VA 3KZIO 2XMXA 3AAEA 5EE2A 2N2MA 3AAAB 4FZLA 5GV0A 3BRZA 2XE2A 3PQSA 2R4LA 2PRNA 3VY8X 4O49A 2YPVA 4RJXA 3VZUX 4E1SA 2ODJA 4PR7A 3WI4A 4F4BA 5AFUK 3T0SA 3AA7B 4K3BA 1MM4A 4C69X 5FVNA 4AKRA 5B66O 3VZWX 1Q9FA 4RJWA 2F1CX 3DZMA 4KRAA 1BXWA 3LK3B 1IZNA 4RL9A 1GFPA 2XE3A 2WJQA 3GP6A 3NJTA 3O0EA 5T5FA 3DWNA 1GFMA 3NSGA 3PGUA 3HOEA 4D5UA 2N2LA 4Z3TA 5ADXL 2J1NA 3LK42 2J4UP 2XG6A 4FMSA 4AZLA 3PRNA 1QJ8A 2ZFGA 3K19A 1GFNA 2QTKA 1GFQA 4QQ1A 5DL7A 4AKRB 2XTQA 3SZVA 3A0HO 2KC0A 3JCUO 4E1TA 3VE1A 1MM5A 4FT6A 5G38A 4U9CA 1IZNB 3C5OA 3HWBA 4O4XA 3SY7A 3WI5A 6PRNA 1G90A 5ADXK 2FGQX 2FGRA 4AUIA 2IWVA 5B5EO 1HXXA 2KZ7A 2LHFA 3AA1A 3POQA 4G75A 4K3CA 4BUMX 3AA6A 4RLCA 2MHLA 2Y0HA 4GF4A 3WU2O 4G76A 2KXPA 5E79O 2YNKA 2PORA 4XNLA 1Q9GA 3PORA 3VZTX 2MNHA 2LFUA 5DL8A 1QJ9A 4N74A 3BRYA 1T16A 3PQUA 1ZHZA 3VE2A 2JMMA 4GCPA 4FUVA 4C4VA 1HXTA 3T24A
chains in the Genus database with same CATH topology
5TISO 5KAFO 3KZIO 3A0HO 3JCUO 3A0BO 5G38A 5H2FO 2AXTO 4UB6O 5G39A 4PJ0O 5GTIO 5B66O 5B5EO 5KAIO 5G3AA 3WU2O 5GTHO 5E79O 4UB8O 4IL6O 1S5LO
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5TIS O;  5KAF O;  3KZI O;  3A0H O;  3JCU O;  3A0B O;  5G38 A;  5H2F O;  2AXT O;  4UB6 O;  5G39 A;  4PJ0 O;  5GTI O;  5B66 O;  5B5E O;  5KAI O;  5G3A A;  3WU2 O;  5GTH O;  5E79 O;  4UB8 O;  4IL6 O;  1S5L O; 
#chains in the Genus database with same CATH topology
 4FOZ A;  4FSO A;  3SYB A;  4N59 A;  5KAF O;  3KVD D;  2X9K A;  4D64 A;  2KZ7 B;  3A0B O;  3AA1 B;  4D65 A;  2XE5 A;  4PUX A;  2ZLD A;  3AA6 B;  4FRX A;  4AYI D;  2KXP B;  2AXT O;  3DWO X;  2GE4 A;  2Y7S A;  4N75 A;  4O3Z A;  3UU2 A;  4GCQ A;  4UB6 O;  5G39 A;  5IYU A;  4AYM C;  2Y0L A;  3FYX A;  1BH3 A;  4AYE C;  1THQ A;  3SYS A;  1QJP A;  1HXU A;  3UAQ A;  3HOL A;  4LSH A;  3SZD A;  4C4V B;  4CTD A;  5GTH O;  4O4U A;  2K4T A;  4AYN A;  1E54 A;  2F1V A;  3QRA A;  3PGS A;  1GFO A;  5DL5 A;  2IWW A;  3HW9 A;  2F1T A;  3LK4 1;  3POX A;  3EMN X;  2W81 C;  1OSM A;  3SY9 A;  4C00 A;  4LSE A;  4IL6 O;  3VY9 X;  3TZG A;  1S5L O;  3G7G A;  2R88 A;  3LK2 A;  4FQE A;  4GCS A;  1MPF A;  4O3W A;  2JQY A;  4RLB A;  5DL6 A;  3V8U A;  2Y0K A;  2XE1 A;  2M06 A;  2R4N A;  3BS0 A;  4KR8 A;  8PRN A;  4LSI A;  3AA0 A;  1H6S 1;  3DA4 A;  4FES A;  4O3Y A;  1ZHW A;  4FZN A;  1YS5 A;  1ORM A;  5D5D A;  5G26 A;  5H2F O;  3JTY A;  2M07 A;  4AYD C;  4FRT A;  4GHB A;  4JCH A;  4PJ0 O;  1ZHY A;  5PRN A;  2K0L A;  2X27 X;  5GTI O;  2ERV A;  3A2S X;  7PRN A;  1BT9 A;  3PGR A;  5JDP A;  4JFB A;  2W80 C;  5KAI O;  2R4O A;  5G3A A;  3RBH A;  2R4P A;  3AAA A;  3POU A;  1P4T A;  3LK2 B;  1ZHT A;  4XNK A;  4LSF A;  3T20 A;  2OMF A;  1PRN A;  2Y2X A;  2WVP A;  3QRC A;  4FZM A;  4N58 A;  3DA3 A;  2XTR A;  4B61 A;  4AKM A;  3AAE B;  3AA0 B;  2KDY A;  3AA7 A;  4KR4 A;  4O3X B;  4UB8 O;  5AFU L;  3UPG A;  2R8A A;  2R89 A;  3PF1 A;  3LK3 A;  5TIS O;  2WJR A;  1ZHX A;  1T1L A;  1PHO A;  4FSP A;  4AFK A;  1OPF A;  2O4V A;  3KZI O;  2XMX A;  3AAE A;  5EE2 A;  2N2M A;  3AAA B;  4FZL A;  5GV0 A;  3BRZ A;  2XE2 A;  3PQS A;  2R4L A;  2PRN A;  3VY8 X;  4O49 A;  2YPV A;  4RJX A;  3VZU X;  4E1S A;  2ODJ A;  4PR7 A;  3WI4 A;  4F4B A;  5AFU K;  3T0S A;  3AA7 B;  4K3B A;  1MM4 A;  4C69 X;  5FVN A;  4AKR A;  5B66 O;  3VZW X;  1Q9F A;  4RJW A;  2F1C X;  3DZM A;  4KRA A;  1BXW A;  3LK3 B;  1IZN A;  4RL9 A;  1GFP A;  2XE3 A;  2WJQ A;  3GP6 A;  3NJT A;  3O0E A;  5T5F A;  3DWN A;  1GFM A;  3NSG A;  3PGU A;  3HOE A;  4D5U A;  2N2L A;  4Z3T A;  5ADX L;  2J1N A;  3LK4 2;  2J4U P;  2XG6 A;  4FMS A;  4AZL A;  3PRN A;  1QJ8 A;  2ZFG A;  3K19 A;  1GFN A;  2QTK A;  1GFQ A;  4QQ1 A;  5DL7 A;  4AKR B;  2XTQ A;  3SZV A;  3A0H O;  2KC0 A;  3JCU O;  4E1T A;  3VE1 A;  1MM5 A;  4FT6 A;  5G38 A;  4U9C A;  1IZN B;  3C5O A;  3HWB A;  4O4X A;  3SY7 A;  3WI5 A;  6PRN A;  1G90 A;  5ADX K;  2FGQ X;  2FGR A;  4AUI A;  2IWV A;  5B5E O;  1HXX A;  2KZ7 A;  2LHF A;  3AA1 A;  3POQ A;  4G75 A;  4K3C A;  4BUM X;  3AA6 A;  4RLC A;  2MHL A;  2Y0H A;  4GF4 A;  3WU2 O;  4G76 A;  2KXP A;  5E79 O;  2YNK A;  2POR A;  4XNL A;  1Q9G A;  3POR A;  3VZT X;  2MNH A;  2LFU A;  5DL8 A;  1QJ9 A;  4N74 A;  3BRY A;  1T16 A;  3PQU A;  1ZHZ A;  3VE2 A;  2JMM A;  4GCP A;  4FUV A;  4C4V A;  1HXT A;  3T24 A; 
#chains in the Genus database with same CATH homology
 5TIS O;  5KAF O;  3KZI O;  3A0H O;  3JCU O;  3A0B O;  5G38 A;  5H2F O;  2AXT O;  4UB6 O;  5G39 A;  4PJ0 O;  5GTI O;  5B66 O;  5B5E O;  5KAI O;  5G3A A;  3WU2 O;  5GTH O;  5E79 O;  4UB8 O;  4IL6 O;  1S5L O; 
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