3BS0A

Crystal structure of the p. putida toluene transporter todx
Total Genus 88
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
432
structure length
414
Chain Sequence
DLEGYGAISRAMGGTSSSYYTGNAALISNPATLSFAPDGNQFELGLDVVTTDIKVHDSHGAEAKSSTGPYVGPQLSYVAQLDDWRFGAGLFVSSGLGTEYGSKSFLSQTENGIQTSFDNSSRLIVLRAPIGFSYQATSKLTFGASVDLVWTSLNLELLLPSSQVGALTAQGNLSGGLVPSLAGFVGTGGAAHFSLSRNSTAGGAVDAVGWGGRLGLTYKLTDNTVLGAMYNFKTSVGDLEGKATLSAISGDGAVLPLDGDIRVKNFEMPASLTLGLAHQFNERWVVAADIKRAYWGDVMDMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYSYAQLILPVIPAYLKRHVTFGGEYDFDKDSRINLAISFGLRERVQTTEMLRQSHSQINAVVSYSKNFHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Outer-membrane transport of aromatic hydrocarbons as a first step in biodegradation.
pubmed doi rcsb
molecule tags Transport protein
source organism Pseudomonas putida
molecule keywords TodX
total genus 88
structure length 414
sequence length 432
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-12-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.60 Mainly Beta Beta Barrel Porin Outer membrane protein transport protein (OMPP1/FadL/TodX) 3bs0A00
2R4LA 2R88A 3PF1A 3PGRA 3DWNA 1T16A 2R8AA 2R4OA 3BRZA 2R89A 2R4PA 3BRYA 3BS0A 3PGUA 3PGSA 2R4NA 1T1LA 3DWOX
chains in the Genus database with same CATH superfamily
5AFUL 3AA7B 5B5EO 1T16A 3SZDA 3AA6B 2R89A 4FRXA 4FZMA 1P4TA 2R4PA 3LK42 4QQ1A 5DL8A 4AFKA 4U9CA 4LSHA 4K3BA 2R4NA 3DA4A 3K19A 5AFUK 4B61A 1QJ8A 3AA0A 3JCUO 1Q9GA 4XNLA 5GTHO 1G90A 3A2SX 4O4XA 3GP6A 3BRYA 4GF4A 3RBHA 3HOLA 3WI4A 1S5LO 4RL9A 4RLBA 3LK3B 4D5UA 1T1LA 5E79O 5IYUA 2R88A 4JFBA 5DL7A 2KXPB 5H2FO 5G26A 4FESA 3VZTX 4AZLA 2XE1A 5TISO 2ZFGA 4AUIA 1ZHWA 2YNKA 2XG6A 4RJWA 3POXA 3NJTA 1OPFA 2WVPA 3AA1A 3SY9A 2ZLDA 1YS5A 2XTQA 4JCHA 4CTDA 4D65A 3T20A 1HXUA 4XNKA 4O3WA 1GFNA 4GCSA 2R4LA 4C00A 1IZNA 4AYMC 4G76A 8PRNA 3UAQA 4N75A 5B66O 7PRNA 1GFQA 4FUVA 3DWOX 3LK2A 4N74A 2M07A 4FZLA 5GTIO 2K0LA 3AAAA 4G75A 4FOZA 3AAEA 2KZ7A 2GE4A 3PRNA 2W80C 4AYNA 1H6S1 5D5DA 3PORA 2X9KA 3A0BO 5G39A 4LSEA 3V8UA 5GV0A 5EE2A 5G38A 3PGUA 1GFMA 3VZWX 3LK41 3WU2O 3SZVA 4O3ZA 3T0SA 1OSMA 2JQYA 4AYID 3PF1A 4E1TA 4FSOA 5G3AA 4AYDC 2JMMA 5T5FA 2O4VA 4LSFA 3SYBA 4AKMA 5ADXL 2FGQX 2IWVA 2J1NA 3PGSA 2Y0LA 3DZMA 2KC0A 3AA0B 4FQEA 5PRNA 3SYSA 1Q9FA 4BUMX 4D64A 3WI5A 4IL6O 2R8AA 4C69X 5FVNA 3FYXA 4AKRA 2MHLA 3VE2A 5ADXK 4C4VA 3KZIO 2PRNA 3UPGA 1PHOA 2LFUA 5DL5A 2ERVA 2R4OA 2YPVA 3BRZA 3NSGA 3AA7A 2IWWA 3AA6A 1PRNA 3G7GA 3HW9A 2KDYA 4N58A 3VY9X 4AYEC 1HXXA 3EMNX 3TZGA 2F1VA 2XE2A 3C5OA 4FT6A 1MPFA 3AA1B 4O49A 3VZUX 4KRAA 1BXWA 3JTYA 3HOEA 3KVDD 4FSPA 4O3XB 2FGRA 2PORA 2Y2XA 2Y0KA 2XE3A 1BH3A 1IZNB 2N2LA 1QJPA 2X27X 3LK3A 3PGRA 1ORMA 4GHBA 1THQA 4FRTA 4LSIA 5KAFO 2J4UP 2KXPA 1E54A 2F1CX 3BS0A 2XTRA 3POUA 4PUXA 2ODJA 3QRAA 3LK2B 1MM4A 3QRCA 4KR8A 3SY7A 3UU2A 3PQUA 3O0EA 3DWNA 3AAAB 2K4TA 3PQSA 1GFOA 3AAEB 4PJ0O 2KZ7B 2MNHA 2W81C 4K3CA 4Z3TA 5JDPA 4GCPA 1ZHXA 4UB8O 2M06A 2QTKA 1ZHTA 2Y7SA 4O3YA 1BT9A 3POQA 4RJXA 3DA3A 2OMFA 3VE1A 5KAIO 4F4BA 6PRNA 3VY8X 4N59A 4KR4A 2WJRA 2XMXA 2N2MA 4RLCA 4FZNA 1ZHZA 2XE5A 1QJ9A 4UB6O 1HXTA 3T24A 4AKRB 1ZHYA 3HWBA 4PR7A 2AXTO 1GFPA 2F1TA 3A0HO 5DL6A 4FMSA 4C4VB 4O4UA 2LHFA 4GCQA 2Y0HA 2WJQA 1MM5A 4E1SA
chains in the Genus database with same CATH topology
2R4LA 2R88A 3PF1A 3PGRA 3DWNA 1T16A 2R8AA 2R4OA 3BRZA 2R89A 2R4PA 3BRYA 3BS0A 3PGUA 3PGSA 2R4NA 1T1LA 3DWOX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R4L A;  2R88 A;  3PF1 A;  3PGR A;  3DWN A;  1T16 A;  2R8A A;  2R4O A;  3BRZ A;  2R89 A;  2R4P A;  3BRY A;  3BS0 A;  3PGU A;  3PGS A;  2R4N A;  1T1L A;  3DWO X; 
#chains in the Genus database with same CATH topology
 5AFU L;  3AA7 B;  5B5E O;  1T16 A;  3SZD A;  3AA6 B;  2R89 A;  4FRX A;  4FZM A;  1P4T A;  2R4P A;  3LK4 2;  4QQ1 A;  5DL8 A;  4AFK A;  4U9C A;  4LSH A;  4K3B A;  2R4N A;  3DA4 A;  3K19 A;  5AFU K;  4B61 A;  1QJ8 A;  3AA0 A;  3JCU O;  1Q9G A;  4XNL A;  5GTH O;  1G90 A;  3A2S X;  4O4X A;  3GP6 A;  3BRY A;  4GF4 A;  3RBH A;  3HOL A;  3WI4 A;  1S5L O;  4RL9 A;  4RLB A;  3LK3 B;  4D5U A;  1T1L A;  5E79 O;  5IYU A;  2R88 A;  4JFB A;  5DL7 A;  2KXP B;  5H2F O;  5G26 A;  4FES A;  3VZT X;  4AZL A;  2XE1 A;  5TIS O;  2ZFG A;  4AUI A;  1ZHW A;  2YNK A;  2XG6 A;  4RJW A;  3POX A;  3NJT A;  1OPF A;  2WVP A;  3AA1 A;  3SY9 A;  2ZLD A;  1YS5 A;  2XTQ A;  4JCH A;  4CTD A;  4D65 A;  3T20 A;  1HXU A;  4XNK A;  4O3W A;  1GFN A;  4GCS A;  2R4L A;  4C00 A;  1IZN A;  4AYM C;  4G76 A;  8PRN A;  3UAQ A;  4N75 A;  5B66 O;  7PRN A;  1GFQ A;  4FUV A;  3DWO X;  3LK2 A;  4N74 A;  2M07 A;  4FZL A;  5GTI O;  2K0L A;  3AAA A;  4G75 A;  4FOZ A;  3AAE A;  2KZ7 A;  2GE4 A;  3PRN A;  2W80 C;  4AYN A;  1H6S 1;  5D5D A;  3POR A;  2X9K A;  3A0B O;  5G39 A;  4LSE A;  3V8U A;  5GV0 A;  5EE2 A;  5G38 A;  3PGU A;  1GFM A;  3VZW X;  3LK4 1;  3WU2 O;  3SZV A;  4O3Z A;  3T0S A;  1OSM A;  2JQY A;  4AYI D;  3PF1 A;  4E1T A;  4FSO A;  5G3A A;  4AYD C;  2JMM A;  5T5F A;  2O4V A;  4LSF A;  3SYB A;  4AKM A;  5ADX L;  2FGQ X;  2IWV A;  2J1N A;  3PGS A;  2Y0L A;  3DZM A;  2KC0 A;  3AA0 B;  4FQE A;  5PRN A;  3SYS A;  1Q9F A;  4BUM X;  4D64 A;  3WI5 A;  4IL6 O;  2R8A A;  4C69 X;  5FVN A;  3FYX A;  4AKR A;  2MHL A;  3VE2 A;  5ADX K;  4C4V A;  3KZI O;  2PRN A;  3UPG A;  1PHO A;  2LFU A;  5DL5 A;  2ERV A;  2R4O A;  2YPV A;  3BRZ A;  3NSG A;  3AA7 A;  2IWW A;  3AA6 A;  1PRN A;  3G7G A;  3HW9 A;  2KDY A;  4N58 A;  3VY9 X;  4AYE C;  1HXX A;  3EMN X;  3TZG A;  2F1V A;  2XE2 A;  3C5O A;  4FT6 A;  1MPF A;  3AA1 B;  4O49 A;  3VZU X;  4KRA A;  1BXW A;  3JTY A;  3HOE A;  3KVD D;  4FSP A;  4O3X B;  2FGR A;  2POR A;  2Y2X A;  2Y0K A;  2XE3 A;  1BH3 A;  1IZN B;  2N2L A;  1QJP A;  2X27 X;  3LK3 A;  3PGR A;  1ORM A;  4GHB A;  1THQ A;  4FRT A;  4LSI A;  5KAF O;  2J4U P;  2KXP A;  1E54 A;  2F1C X;  3BS0 A;  2XTR A;  3POU A;  4PUX A;  2ODJ A;  3QRA A;  3LK2 B;  1MM4 A;  3QRC A;  4KR8 A;  3SY7 A;  3UU2 A;  3PQU A;  3O0E A;  3DWN A;  3AAA B;  2K4T A;  3PQS A;  1GFO A;  3AAE B;  4PJ0 O;  2KZ7 B;  2MNH A;  2W81 C;  4K3C A;  4Z3T A;  5JDP A;  4GCP A;  1ZHX A;  4UB8 O;  2M06 A;  2QTK A;  1ZHT A;  2Y7S A;  4O3Y A;  1BT9 A;  3POQ A;  4RJX A;  3DA3 A;  2OMF A;  3VE1 A;  5KAI O;  4F4B A;  6PRN A;  3VY8 X;  4N59 A;  4KR4 A;  2WJR A;  2XMX A;  2N2M A;  4RLC A;  4FZN A;  1ZHZ A;  2XE5 A;  1QJ9 A;  4UB6 O;  1HXT A;  3T24 A;  4AKR B;  1ZHY A;  3HWB A;  4PR7 A;  2AXT O;  1GFP A;  2F1T A;  3A0H O;  5DL6 A;  4FMS A;  4C4V B;  4O4U A;  2LHF A;  4GCQ A;  2Y0H A;  2WJQ A;  1MM5 A;  4E1S A; 
#chains in the Genus database with same CATH homology
 2R4L A;  2R88 A;  3PF1 A;  3PGR A;  3DWN A;  1T16 A;  2R8A A;  2R4O A;  3BRZ A;  2R89 A;  2R4P A;  3BRY A;  3BS0 A;  3PGU A;  3PGS A;  2R4N A;  1T1L A;  3DWO X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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