3DWNA

Crystal structure of the long-chain fatty acid transporter fadl mutant a77e/s100r
Total Genus 121
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
421
structure length
421
Chain Sequence
AGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTEWVPNMHFVAPINDQFGWGASITRNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Transmembrane passage of hydrophobic compounds through a protein channel wall.
pubmed doi rcsb
molecule tags Lipid transport
source organism Escherichia coli
molecule keywords Long-chain fatty acid transport protein
total genus 121
structure length 421
sequence length 421
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-07-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.60 Mainly Beta Beta Barrel Porin Outer membrane protein transport protein (OMPP1/FadL/TodX) 3dwnA00
2R8AA 1T1LA 3PGUA 3DWOX 3BRZA 3PF1A 2R4NA 2R4PA 2R4LA 3BS0A 3PGSA 2R88A 3DWNA 1T16A 3BRYA 3PGRA 2R89A 2R4OA
chains in the Genus database with same CATH superfamily
3PQUA 3TZGA 3LK42 3SY9A 4AKRA 3DA4A 2K4TA 4O3YA 4K3BA 2LHFA 2WVPA 3VZUX 4Z3TA 4FSOA 2R8AA 5KAIO 1ZHYA 1OSMA 4AYNA 3POUA 1QJ8A 2R4NA 3SYBA 3WU2O 2AXTO 2XMXA 4JCHA 1GFMA 4UB6O 3EMNX 1GFPA 1IZNA 3NSGA 3VE2A 1S5LO 3KZIO 2XTRA 5DL8A 4RLCA 4AFKA 4AZLA 3FYXA 5PRNA 1YS5A 2X27X 2QTKA 1THQA 4AKRB 1GFQA 2FGQX 3DWNA 4LSHA 3K19A 3VY9X 2MHLA 1BT9A 1H6S1 6PRNA 5ADXL 3SZVA 1GFOA 1HXUA 4C4VB 5B66O 2J4UP 3PQSA 4O3ZA 5E79O 1IZNB 4K3CA 5H2FO 4D64A 1T1LA 2K0LA 2YNKA 1QJ9A 3JTYA 4PJ0O 3WI5A 2W81C 1HXXA 5FVNA 3LK2B 3VE1A 3PGRA 2XTQA 3QRAA 4XNLA 3A2SX 1QJPA 3DWOX 3T0SA 3PF1A 4GCSA 2JQYA 3AA7A 4FT6A 4GF4A 4C4VA 2Y0KA 3RBHA 4AYDC 1HXTA 4KR8A 1BH3A 3PORA 4C69X 3PGUA 3A0BO 2KDYA 3C5OA 4KR4A 4O3XB 4N75A 2IWVA 5DL5A 2YPVA 4D65A 2KXPA 2J1NA 5DL7A 4E1SA 4AYEC 3BRYA 3LK2A 4AKMA 4JFBA 3QRCA 1E54A 3SZDA 2Y0LA 2R4PA 1ZHZA 2WJRA 2R88A 3DA3A 3AA7B 4FRXA 4O4XA 1MM5A 4AUIA 5G3AA 2XE1A 4FUVA 4KRAA 3HOEA 4LSIA 2N2MA 3AAEA 2F1CX 4FZNA 4RJXA 2F1VA 1ZHWA 3LK41 5GTIO 3HWBA 1MM4A 4FSPA 2XE5A 2KXPB 1Q9GA 5JDPA 3T20A 1GFNA 4GCQA 2GE4A 4O4UA 3KVDD 4CTDA 3WI4A 5AFUK 8PRNA 2X9KA 2ODJA 2R89A 5T5FA 4AYID 3AAAB 3HW9A 4RJWA 4RL9A 4C00A 3BRZA 4G75A 3AAEB 4PUXA 5TISO 2LFUA 3AA1A 2XE3A 4XNKA 4FZLA 2R4OA 3AA0B 4O3WA 3UU2A 3V8UA 3O0EA 2FGRA 3GP6A 5AFUL 1Q9FA 3LK3B 2PORA 4FRTA 3PGSA 2JMMA 4QQ1A 1ORMA 3JCUO 1ZHXA 3UAQA 7PRNA 3POXA 1ZHTA 4LSEA 4BUMX 1BXWA 5GTHO 3AAAA 3A0HO 2M07A 2KC0A 2PRNA 4UB8O 2KZ7B 2W80C 5DL6A 3DZMA 3AA1B 4PR7A 5KAFO 2Y7SA 4U9CA 3PRNA 5D5DA 3AA0A 2ERVA 3VZTX 4B61A 2XE2A 3SYSA 5IYUA 3SY7A 3HOLA 2ZLDA 2R4LA 3LK3A 1MPFA 3AA6A 4IL6O 1OPFA 2XG6A 5ADXK 4FMSA 4E1TA 3NJTA 5EE2A 2Y2XA 3POQA 4LSFA 4D5UA 4F4BA 5B5EO 2OMFA 4FOZA 4GHBA 1P4TA 4N59A 3VZWX 2IWWA 2MNHA 5G38A 3VY8X 4O49A 2KZ7A 2N2LA 2WJQA 4N74A 5G26A 1G90A 4RLBA 4FZMA 5GV0A 3UPGA 4GCPA 4FESA 4AYMC 2Y0HA 3T24A 3G7GA 1PRNA 2F1TA 2O4VA 3BS0A 4N58A 5G39A 1PHOA 4FQEA 2M06A 3AA6B 4G76A 1T16A 2ZFGA
chains in the Genus database with same CATH topology
2R8AA 1T1LA 3PGUA 3DWOX 3BRZA 3PF1A 2R4NA 2R4PA 2R4LA 3BS0A 3PGSA 2R88A 3DWNA 1T16A 3BRYA 3PGRA 2R89A 2R4OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R8A A;  1T1L A;  3PGU A;  3DWO X;  3BRZ A;  3PF1 A;  2R4N A;  2R4P A;  2R4L A;  3BS0 A;  3PGS A;  2R88 A;  3DWN A;  1T16 A;  3BRY A;  3PGR A;  2R89 A;  2R4O A; 
#chains in the Genus database with same CATH topology
 3PQU A;  3TZG A;  3LK4 2;  3SY9 A;  4AKR A;  3DA4 A;  2K4T A;  4O3Y A;  4K3B A;  2LHF A;  2WVP A;  3VZU X;  4Z3T A;  4FSO A;  2R8A A;  5KAI O;  1ZHY A;  1OSM A;  4AYN A;  3POU A;  1QJ8 A;  2R4N A;  3SYB A;  3WU2 O;  2AXT O;  2XMX A;  4JCH A;  1GFM A;  4UB6 O;  3EMN X;  1GFP A;  1IZN A;  3NSG A;  3VE2 A;  1S5L O;  3KZI O;  2XTR A;  5DL8 A;  4RLC A;  4AFK A;  4AZL A;  3FYX A;  5PRN A;  1YS5 A;  2X27 X;  2QTK A;  1THQ A;  4AKR B;  1GFQ A;  2FGQ X;  3DWN A;  4LSH A;  3K19 A;  3VY9 X;  2MHL A;  1BT9 A;  1H6S 1;  6PRN A;  5ADX L;  3SZV A;  1GFO A;  1HXU A;  4C4V B;  5B66 O;  2J4U P;  3PQS A;  4O3Z A;  5E79 O;  1IZN B;  4K3C A;  5H2F O;  4D64 A;  1T1L A;  2K0L A;  2YNK A;  1QJ9 A;  3JTY A;  4PJ0 O;  3WI5 A;  2W81 C;  1HXX A;  5FVN A;  3LK2 B;  3VE1 A;  3PGR A;  2XTQ A;  3QRA A;  4XNL A;  3A2S X;  1QJP A;  3DWO X;  3T0S A;  3PF1 A;  4GCS A;  2JQY A;  3AA7 A;  4FT6 A;  4GF4 A;  4C4V A;  2Y0K A;  3RBH A;  4AYD C;  1HXT A;  4KR8 A;  1BH3 A;  3POR A;  4C69 X;  3PGU A;  3A0B O;  2KDY A;  3C5O A;  4KR4 A;  4O3X B;  4N75 A;  2IWV A;  5DL5 A;  2YPV A;  4D65 A;  2KXP A;  2J1N A;  5DL7 A;  4E1S A;  4AYE C;  3BRY A;  3LK2 A;  4AKM A;  4JFB A;  3QRC A;  1E54 A;  3SZD A;  2Y0L A;  2R4P A;  1ZHZ A;  2WJR A;  2R88 A;  3DA3 A;  3AA7 B;  4FRX A;  4O4X A;  1MM5 A;  4AUI A;  5G3A A;  2XE1 A;  4FUV A;  4KRA A;  3HOE A;  4LSI A;  2N2M A;  3AAE A;  2F1C X;  4FZN A;  4RJX A;  2F1V A;  1ZHW A;  3LK4 1;  5GTI O;  3HWB A;  1MM4 A;  4FSP A;  2XE5 A;  2KXP B;  1Q9G A;  5JDP A;  3T20 A;  1GFN A;  4GCQ A;  2GE4 A;  4O4U A;  3KVD D;  4CTD A;  3WI4 A;  5AFU K;  8PRN A;  2X9K A;  2ODJ A;  2R89 A;  5T5F A;  4AYI D;  3AAA B;  3HW9 A;  4RJW A;  4RL9 A;  4C00 A;  3BRZ A;  4G75 A;  3AAE B;  4PUX A;  5TIS O;  2LFU A;  3AA1 A;  2XE3 A;  4XNK A;  4FZL A;  2R4O A;  3AA0 B;  4O3W A;  3UU2 A;  3V8U A;  3O0E A;  2FGR A;  3GP6 A;  5AFU L;  1Q9F A;  3LK3 B;  2POR A;  4FRT A;  3PGS A;  2JMM A;  4QQ1 A;  1ORM A;  3JCU O;  1ZHX A;  3UAQ A;  7PRN A;  3POX A;  1ZHT A;  4LSE A;  4BUM X;  1BXW A;  5GTH O;  3AAA A;  3A0H O;  2M07 A;  2KC0 A;  2PRN A;  4UB8 O;  2KZ7 B;  2W80 C;  5DL6 A;  3DZM A;  3AA1 B;  4PR7 A;  5KAF O;  2Y7S A;  4U9C A;  3PRN A;  5D5D A;  3AA0 A;  2ERV A;  3VZT X;  4B61 A;  2XE2 A;  3SYS A;  5IYU A;  3SY7 A;  3HOL A;  2ZLD A;  2R4L A;  3LK3 A;  1MPF A;  3AA6 A;  4IL6 O;  1OPF A;  2XG6 A;  5ADX K;  4FMS A;  4E1T A;  3NJT A;  5EE2 A;  2Y2X A;  3POQ A;  4LSF A;  4D5U A;  4F4B A;  5B5E O;  2OMF A;  4FOZ A;  4GHB A;  1P4T A;  4N59 A;  3VZW X;  2IWW A;  2MNH A;  5G38 A;  3VY8 X;  4O49 A;  2KZ7 A;  2N2L A;  2WJQ A;  4N74 A;  5G26 A;  1G90 A;  4RLB A;  4FZM A;  5GV0 A;  3UPG A;  4GCP A;  4FES A;  4AYM C;  2Y0H A;  3T24 A;  3G7G A;  1PRN A;  2F1T A;  2O4V A;  3BS0 A;  4N58 A;  5G39 A;  1PHO A;  4FQE A;  2M06 A;  3AA6 B;  4G76 A;  1T16 A;  2ZFG A; 
#chains in the Genus database with same CATH homology
 2R8A A;  1T1L A;  3PGU A;  3DWO X;  3BRZ A;  3PF1 A;  2R4N A;  2R4P A;  2R4L A;  3BS0 A;  3PGS A;  2R88 A;  3DWN A;  1T16 A;  3BRY A;  3PGR A;  2R89 A;  2R4O A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...