3DWNA

Crystal structure of the long-chain fatty acid transporter fadl mutant a77e/s100r
Total Genus 121
50100150200250300350400020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
421
structure length
421
Chain Sequence
AGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTEWVPNMHFVAPINDQFGWGASITRNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF
50100150200250300350400400300200100
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV1 (1-4)S12 (287-296)O1 (6-8)AH1 (28-32)TVIII1 (9-12)S19 (402-420)TIV6 (24-27)3H1 (13-15)S17 (366-376)TIV4 (17-20)S15 (324-334)TIV3 (15-18)TII1 (19-22)S11 (274-284)EMPTYS2 (77-89)S8 (221-228)3H2 (34-39)S5 (120-135)S6 (140-158)S1 (44-59)TIV14 (376-379)TIV15 (378-381)TI2 (109-112)TIV7 (70-73)S4 (104-107)TIV8 (89-92)TI7 (358-361)3H3 (115-117)AH2 (161-172)TI3 (112-115)TIV9 (137-140)S7 (196-218)3H4 (174-177)AH3 (179-190)TI4 (192-195)TIV11 (218-221)TI'1 (258-261)O2 (252-254)S10 (261-271)S13 (303-307)O3 (296-298)TI5 (284-287)3H6 (298-300)TI6 (308-311)S14 (313-318)S18 (381-399)TIV12 (336-339)S16 (339-348)TIV13 (359-362)TI1 (62-65)S9 (231-241)3H7 (354-356)3H5 (245-247)S3 (92-99)Updating...
connected with : NaN
molecule tags Lipid transport
source organism Escherichia coli
publication title Transmembrane passage of hydrophobic compounds through a protein channel wall.
pubmed doi rcsb
molecule keywords Long-chain fatty acid transport protein
total genus 121
structure length 421
sequence length 421
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-07-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.60 Mainly Beta Beta Barrel Porin Outer membrane protein transport protein (OMPP1/FadL/TodX) 3dwnA00
3BRZA 2R89A 1T16A 2R4PA 3PGUA 3PGRA 3DWNA 2R88A 3DWOX 1T1LA 3PF1A 3PGSA 3BS0A 2R4NA 2R4LA 2R4OA 2R8AA 3BRYA
chains in the Genus database with same CATH superfamily
1OSMA 2ERVA 6PRNA 2OMFA 2XE2A 4K3CA 1MM5A 4O3XB 4RJWA 2XE5A 2J4UP 2F1CX 3AA0A 3AAEB 4FESA 4KR4A 4O4XA 3BRYA 1P4TA 4O4UA 1H6S1 1QJPA 4FUVA 3V8UA 4KRAA 1HXTA 4CTDA 4BUMX 3VE1A 4KR8A 5ADXK 4G75A 3PRNA 3LK3A 4F4BA 3DA3A 4JCHA 5AFUL 3HWBA 2KZ7B 1THQA 4JFBA 5G26A 2PORA 4FMSA 4RJXA 4N75A 1MPFA 2F1TA 3AA1B 2M07A 5B66O 2WVPA 1HXUA 1GFNA 1OPFA 2R4PA 2Y0KA 2JQYA 1QJ9A 3EMNX 3LK2B 3PF1A 5TISO 4AYMC 1E54A 2R4NA 2R4LA 2N2LA 2QTKA 2R8AA 3LK41 4GCPA 4FSOA 2K0LA 3T20A 3AAAB 4G76A 2KXPB 3O0EA 4LSIA 5DL7A 3SYSA 4AKRB 1IZNA 4E1SA 3GP6A 3PQSA 4QQ1A 5G38A 4N58A 4GHBA 3AA6A 2R89A 4FZMA 1T16A 5G3AA 2X9KA 3PGUA 4XNLA 3UAQA 3FYXA 2XE1A 4GCQA 4FQEA 4N59A 5PRNA 5T5FA 4AYID 3G7GA 5DL6A 3QRAA 4C00A 3A0BO 4E1TA 4C4VA 3PGRA 3NJTA 1ORMA 3KVDD 4AYNA 4LSHA 1ZHYA 2W80C 3NSGA 3PORA 2O4VA 4AUIA 5GV0A 1MM4A 5H2FO 2MHLA 4B61A 2PRNA 3SZVA 1GFQA 4O3ZA 3WI4A 4AYDC 3K19A 4FRXA 3HOEA 3POUA 3AA7B 1GFPA 3SZDA 3TZGA 4D64A 2M06A 4K3BA 4U9CA 3WU2O 5AFUK 3A0HO 3AAEA 2WJQA 3SY9A 4LSEA 1PHOA 3KZIO 3BS0A 2KC0A 1ZHZA 4RLCA 3T24A 4LSFA 5GTHO 3SY7A 3AA0B 2X27X 3WI5A 1Q9FA 3VY9X 3UU2A 2FGRA 3JCUO 1ZHWA 2LHFA 3A2SX 4FZLA 4PJ0O 5G39A 2JMMA 2ODJA 3PGSA 4AYEC 5KAIO 4C69X 1QJ8A 1GFOA 2KZ7A 1ZHTA 2R88A 4FRTA 3LK3B 4FSPA 2Y0HA 3AA1A 4O49A 5KAFO 2R4OA 2YNKA 4IL6O 5GTIO 4O3YA 2XG6A 1GFMA 1HXXA 3LK2A 4GCSA 2YPVA 2Y0LA 5JDPA 3DZMA 1S5LO 4AKMA 4D5UA 5D5DA 5ADXL 2Y7SA 3AAAA 2GE4A 2KXPA 2ZLDA 4RLBA 3UPGA 2J1NA 3VZTX 4AKRA 7PRNA 2MNHA 3VY8X 2N2MA 3PQUA 2KDYA 1BXWA 2K4TA 4UB8O 3C5OA 3BRZA 2XTRA 3DWOX 3DA4A 4PR7A 4AFKA 2W81C 2XMXA 1IZNB 3JTYA 4XNKA 4UB6O 2XTQA 2WJRA 4PUXA 3HW9A 3POXA 5E79O 5EE2A 5FVNA 4AZLA 3DWNA 3AA6B 4FT6A 3HOLA 3POQA 4Z3TA 5B5EO 1G90A 1ZHXA 3T0SA 2F1VA 4FZNA 1PRNA 5DL5A 4O3WA 8PRNA 3VE2A 1BH3A 3LK42 1Q9GA 2IWWA 3VZUX 2AXTO 1T1LA 2XE3A 4FOZA 4C4VB 1YS5A 2LFUA 4D65A 5IYUA 4N74A 2ZFGA 3AA7A 2Y2XA 3SYBA 4GF4A 2IWVA 3QRCA 1BT9A 3RBHA 5DL8A 2FGQX 3VZWX 4RL9A
chains in the Genus database with same CATH topology
3BRZA 2R89A 1T16A 2R4PA 3PGUA 3PGRA 3DWNA 2R88A 3DWOX 1T1LA 3PF1A 3PGSA 3BS0A 2R4NA 2R4LA 2R4OA 2R8AA 3BRYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BRZ A;  2R89 A;  1T16 A;  2R4P A;  3PGU A;  3PGR A;  3DWN A;  2R88 A;  3DWO X;  1T1L A;  3PF1 A;  3PGS A;  3BS0 A;  2R4N A;  2R4L A;  2R4O A;  2R8A A;  3BRY A; 
#chains in the Genus database with same CATH topology
 1OSM A;  2ERV A;  6PRN A;  2OMF A;  2XE2 A;  4K3C A;  1MM5 A;  4O3X B;  4RJW A;  2XE5 A;  2J4U P;  2F1C X;  3AA0 A;  3AAE B;  4FES A;  4KR4 A;  4O4X A;  3BRY A;  1P4T A;  4O4U A;  1H6S 1;  1QJP A;  4FUV A;  3V8U A;  4KRA A;  1HXT A;  4CTD A;  4BUM X;  3VE1 A;  4KR8 A;  5ADX K;  4G75 A;  3PRN A;  3LK3 A;  4F4B A;  3DA3 A;  4JCH A;  5AFU L;  3HWB A;  2KZ7 B;  1THQ A;  4JFB A;  5G26 A;  2POR A;  4FMS A;  4RJX A;  4N75 A;  1MPF A;  2F1T A;  3AA1 B;  2M07 A;  5B66 O;  2WVP A;  1HXU A;  1GFN A;  1OPF A;  2R4P A;  2Y0K A;  2JQY A;  1QJ9 A;  3EMN X;  3LK2 B;  3PF1 A;  5TIS O;  4AYM C;  1E54 A;  2R4N A;  2R4L A;  2N2L A;  2QTK A;  2R8A A;  3LK4 1;  4GCP A;  4FSO A;  2K0L A;  3T20 A;  3AAA B;  4G76 A;  2KXP B;  3O0E A;  4LSI A;  5DL7 A;  3SYS A;  4AKR B;  1IZN A;  4E1S A;  3GP6 A;  3PQS A;  4QQ1 A;  5G38 A;  4N58 A;  4GHB A;  3AA6 A;  2R89 A;  4FZM A;  1T16 A;  5G3A A;  2X9K A;  3PGU A;  4XNL A;  3UAQ A;  3FYX A;  2XE1 A;  4GCQ A;  4FQE A;  4N59 A;  5PRN A;  5T5F A;  4AYI D;  3G7G A;  5DL6 A;  3QRA A;  4C00 A;  3A0B O;  4E1T A;  4C4V A;  3PGR A;  3NJT A;  1ORM A;  3KVD D;  4AYN A;  4LSH A;  1ZHY A;  2W80 C;  3NSG A;  3POR A;  2O4V A;  4AUI A;  5GV0 A;  1MM4 A;  5H2F O;  2MHL A;  4B61 A;  2PRN A;  3SZV A;  1GFQ A;  4O3Z A;  3WI4 A;  4AYD C;  3K19 A;  4FRX A;  3HOE A;  3POU A;  3AA7 B;  1GFP A;  3SZD A;  3TZG A;  4D64 A;  2M06 A;  4K3B A;  4U9C A;  3WU2 O;  5AFU K;  3A0H O;  3AAE A;  2WJQ A;  3SY9 A;  4LSE A;  1PHO A;  3KZI O;  3BS0 A;  2KC0 A;  1ZHZ A;  4RLC A;  3T24 A;  4LSF A;  5GTH O;  3SY7 A;  3AA0 B;  2X27 X;  3WI5 A;  1Q9F A;  3VY9 X;  3UU2 A;  2FGR A;  3JCU O;  1ZHW A;  2LHF A;  3A2S X;  4FZL A;  4PJ0 O;  5G39 A;  2JMM A;  2ODJ A;  3PGS A;  4AYE C;  5KAI O;  4C69 X;  1QJ8 A;  1GFO A;  2KZ7 A;  1ZHT A;  2R88 A;  4FRT A;  3LK3 B;  4FSP A;  2Y0H A;  3AA1 A;  4O49 A;  5KAF O;  2R4O A;  2YNK A;  4IL6 O;  5GTI O;  4O3Y A;  2XG6 A;  1GFM A;  1HXX A;  3LK2 A;  4GCS A;  2YPV A;  2Y0L A;  5JDP A;  3DZM A;  1S5L O;  4AKM A;  4D5U A;  5D5D A;  5ADX L;  2Y7S A;  3AAA A;  2GE4 A;  2KXP A;  2ZLD A;  4RLB A;  3UPG A;  2J1N A;  3VZT X;  4AKR A;  7PRN A;  2MNH A;  3VY8 X;  2N2M A;  3PQU A;  2KDY A;  1BXW A;  2K4T A;  4UB8 O;  3C5O A;  3BRZ A;  2XTR A;  3DWO X;  3DA4 A;  4PR7 A;  4AFK A;  2W81 C;  2XMX A;  1IZN B;  3JTY A;  4XNK A;  4UB6 O;  2XTQ A;  2WJR A;  4PUX A;  3HW9 A;  3POX A;  5E79 O;  5EE2 A;  5FVN A;  4AZL A;  3DWN A;  3AA6 B;  4FT6 A;  3HOL A;  3POQ A;  4Z3T A;  5B5E O;  1G90 A;  1ZHX A;  3T0S A;  2F1V A;  4FZN A;  1PRN A;  5DL5 A;  4O3W A;  8PRN A;  3VE2 A;  1BH3 A;  3LK4 2;  1Q9G A;  2IWW A;  3VZU X;  2AXT O;  1T1L A;  2XE3 A;  4FOZ A;  4C4V B;  1YS5 A;  2LFU A;  4D65 A;  5IYU A;  4N74 A;  2ZFG A;  3AA7 A;  2Y2X A;  3SYB A;  4GF4 A;  2IWV A;  3QRC A;  1BT9 A;  3RBH A;  5DL8 A;  2FGQ X;  3VZW X;  4RL9 A; 
#chains in the Genus database with same CATH homology
 3BRZ A;  2R89 A;  1T16 A;  2R4P A;  3PGU A;  3PGR A;  3DWN A;  2R88 A;  3DWO X;  1T1L A;  3PF1 A;  3PGS A;  3BS0 A;  2R4N A;  2R4L A;  2R4O A;  2R8A A;  3BRY A; 
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