3DZM | Genus

Total Genus 44

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	44
sequence length	208
structure length	208
Chain Sequence	HAAKFSVEAGAGFYGGFGGQLAVVAEDLAPGLPLGVRLGVGFATSDALDDGYDLGGGTTWGDVKEAGKFSEWGQNVTLSLDVLYKPSGLGLPVEVAPYFGVRYNFFSGGYTDPEDNLTIKAQTISSNQLGLGLGVRAAYPLMPNLSLVGDLGVDYYFQACFTRVEEDDSGNKSQSSVCPGDSGYEDVNKFVTQPEWVLKLRLGAAYRF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Unknown function
source organism	Thermus thermophilus
publication title	Crystal structure of a major outer membrane protein from Thermus thermophilus HB27 pubmed doi rcsb
molecule keywords	Hypothetical conserved protein
total genus	44
structure length	208
sequence length	208
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2008-07-30

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.70	Mainly Beta	Beta Barrel	Porin	outer membrane protein from Thermus thermophilus HB27.	3dzmA00

3DZMA
chains in the Genus database with same CATH superfamily

1HXUA 4FSOA 3PRNA 5JDPA 3HW9A 4LSEA 5FVNA 3UAQA 3AAAB 3POXA 4PR7A 3LK3B 1MM5A 4O3WA 4N59A 2N2LA 2OMFA 1E54A 3AA0A 4F4BA 1ZHZA 3AA1A 4JFBA 4CTDA 4E1TA 4N75A 1GFOA 5AFUK 4FZLA 2MHLA 1PRNA 2XE2A 4AYNA 2M06A 4G75A 2JMMA 5G26A 4FOZA 3DA3A 3HOEA 4AUIA 2KXPB 2R89A 2M07A 3PGSA 2JQYA 4RLBA 2YNKA 3G7GA 1QJ9A 2R88A 3BRYA 4O4UA 4O3XB 1MPFA 3AA7A 4D64A 5ADXL 2FGRA 5IYUA 1P4TA 1YS5A 2PORA 5DL7A 3AAAA 3JTYA 1HXXA 4PJ0O 4RJWA 4GF4A 3JCUO 3BRZA 3K19A 4G76A 3SZDA 3T0SA 4C00A 3AA7B 1THQA 1T16A 1PHOA 3VY9X 2R4NA 1MM4A 2W80C 2ODJA 8PRNA 4AYDC 4E1SA 1ZHWA 4GCSA 5TISO 4K3BA 3PQSA 4KR4A 2F1TA 2KXPA 1GFNA 3SY7A 5B5EO 3SZVA 4D65A 3A0HO 4RJXA 4UB8O 2Y2XA 3QRAA 2Y0KA 4FRXA 4FT6A 3T20A 2O4VA 3WU2O 5G38A 2F1CX 2XE5A 3VE2A 5AFUL 2LHFA 3SYBA 2WJRA 2R4LA 3PQUA 4FUVA 4KR8A 5G3AA 5KAIO 1QJ8A 3PF1A 4AYID 1G90A 2GE4A 3NJTA 4IL6O 1GFMA 4FZNA 3FYXA 4N74A 3VZWX 2K0LA 1IZNB 3RBHA 2ZLDA 2FGQX 4O4XA 3SY9A 4JCHA 5GTHO 4BUMX 3POQA 3PGUA 4FRTA 4AYEC 4XNKA 4PUXA 2LFUA 2X27X 4AKMA 3UU2A 3QRCA 2J1NA 1H6S1 3GP6A 1GFQA 4K3CA 4AZLA 5GV0A 2XE1A 3DZMA 1T1LA 1S5LO 3AA6A 4AFKA 3VZTX 5DL6A 4AKRB 5B66O 4O49A 3LK2A 3DA4A 2IWVA 3HWBA 3AAEB 1Q9FA 2KZ7A 2R4PA 4XNLA 4LSIA 3SYSA 3TZGA 3EMNX 4KRAA 5DL8A 1OSMA 4LSHA 2AXTO 4GCQA 1IZNA 2F1VA 3AA6B 2XTRA 2ERVA 2WJQA 4FZMA 4N58A 5E79O 3LK2B 5H2FO 4LSFA 5EE2A 3WI4A 4Z3TA 5DL5A 2KZ7B 6PRNA 2KDYA 2Y7SA 3A2SX 3KVDD 4GCPA 3POUA 3PORA 7PRNA 4O3ZA 4C4VB 3DWNA 3KZIO 3T24A 4C69X 2J4UP 3NSGA 5T5FA 2ZFGA 3LK42 2QTKA 5D5DA 4AYMC 2R4OA 4QQ1A 3VZUX 1BH3A 4AKRA 4FQEA 2Y0HA 2YPVA 2XE3A 1ZHYA 4FESA 2MNHA 3AAEA 5KAFO 4RLCA 2XTQA 1BXWA 3O0EA 2Y0LA 4C4VA 3BS0A 3C5OA 3PGRA 4B61A 1GFPA 1ZHXA 2PRNA 3LK41 5GTIO 3V8UA 3WI5A 4UB6O 3AA0B 5ADXK 1ORMA 2KC0A 2IWWA 1QJPA 2XMXA 3AA1B 3VE1A 3UPGA 4O3YA 1ZHTA 4GHBA 1BT9A 2K4TA 2N2MA 2X9KA 3HOLA 2XG6A 4FMSA 4FSPA 5PRNA 4U9CA 3DWOX 1OPFA 3LK3A 3VY8X 2WVPA 3A0BO 5G39A 4D5UA 1HXTA 2W81C 4RL9A 2R8AA 1Q9GA
chains in the Genus database with same CATH topology

3DZMA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3DZM A; 
#chains in the Genus database with same CATH topology
 1HXU A;  4FSO A;  3PRN A;  5JDP A;  3HW9 A;  4LSE A;  5FVN A;  3UAQ A;  3AAA B;  3POX A;  4PR7 A;  3LK3 B;  1MM5 A;  4O3W A;  4N59 A;  2N2L A;  2OMF A;  1E54 A;  3AA0 A;  4F4B A;  1ZHZ A;  3AA1 A;  4JFB A;  4CTD A;  4E1T A;  4N75 A;  1GFO A;  5AFU K;  4FZL A;  2MHL A;  1PRN A;  2XE2 A;  4AYN A;  2M06 A;  4G75 A;  2JMM A;  5G26 A;  4FOZ A;  3DA3 A;  3HOE A;  4AUI A;  2KXP B;  2R89 A;  2M07 A;  3PGS A;  2JQY A;  4RLB A;  2YNK A;  3G7G A;  1QJ9 A;  2R88 A;  3BRY A;  4O4U A;  4O3X B;  1MPF A;  3AA7 A;  4D64 A;  5ADX L;  2FGR A;  5IYU A;  1P4T A;  1YS5 A;  2POR A;  5DL7 A;  3AAA A;  3JTY A;  1HXX A;  4PJ0 O;  4RJW A;  4GF4 A;  3JCU O;  3BRZ A;  3K19 A;  4G76 A;  3SZD A;  3T0S A;  4C00 A;  3AA7 B;  1THQ A;  1T16 A;  1PHO A;  3VY9 X;  2R4N A;  1MM4 A;  2W80 C;  2ODJ A;  8PRN A;  4AYD C;  4E1S A;  1ZHW A;  4GCS A;  5TIS O;  4K3B A;  3PQS A;  4KR4 A;  2F1T A;  2KXP A;  1GFN A;  3SY7 A;  5B5E O;  3SZV A;  4D65 A;  3A0H O;  4RJX A;  4UB8 O;  2Y2X A;  3QRA A;  2Y0K A;  4FRX A;  4FT6 A;  3T20 A;  2O4V A;  3WU2 O;  5G38 A;  2F1C X;  2XE5 A;  3VE2 A;  5AFU L;  2LHF A;  3SYB A;  2WJR A;  2R4L A;  3PQU A;  4FUV A;  4KR8 A;  5G3A A;  5KAI O;  1QJ8 A;  3PF1 A;  4AYI D;  1G90 A;  2GE4 A;  3NJT A;  4IL6 O;  1GFM A;  4FZN A;  3FYX A;  4N74 A;  3VZW X;  2K0L A;  1IZN B;  3RBH A;  2ZLD A;  2FGQ X;  4O4X A;  3SY9 A;  4JCH A;  5GTH O;  4BUM X;  3POQ A;  3PGU A;  4FRT A;  4AYE C;  4XNK A;  4PUX A;  2LFU A;  2X27 X;  4AKM A;  3UU2 A;  3QRC A;  2J1N A;  1H6S 1;  3GP6 A;  1GFQ A;  4K3C A;  4AZL A;  5GV0 A;  2XE1 A;  3DZM A;  1T1L A;  1S5L O;  3AA6 A;  4AFK A;  3VZT X;  5DL6 A;  4AKR B;  5B66 O;  4O49 A;  3LK2 A;  3DA4 A;  2IWV A;  3HWB A;  3AAE B;  1Q9F A;  2KZ7 A;  2R4P A;  4XNL A;  4LSI A;  3SYS A;  3TZG A;  3EMN X;  4KRA A;  5DL8 A;  1OSM A;  4LSH A;  2AXT O;  4GCQ A;  1IZN A;  2F1V A;  3AA6 B;  2XTR A;  2ERV A;  2WJQ A;  4FZM A;  4N58 A;  5E79 O;  3LK2 B;  5H2F O;  4LSF A;  5EE2 A;  3WI4 A;  4Z3T A;  5DL5 A;  2KZ7 B;  6PRN A;  2KDY A;  2Y7S A;  3A2S X;  3KVD D;  4GCP A;  3POU A;  3POR A;  7PRN A;  4O3Z A;  4C4V B;  3DWN A;  3KZI O;  3T24 A;  4C69 X;  2J4U P;  3NSG A;  5T5F A;  2ZFG A;  3LK4 2;  2QTK A;  5D5D A;  4AYM C;  2R4O A;  4QQ1 A;  3VZU X;  1BH3 A;  4AKR A;  4FQE A;  2Y0H A;  2YPV A;  2XE3 A;  1ZHY A;  4FES A;  2MNH A;  3AAE A;  5KAF O;  4RLC A;  2XTQ A;  1BXW A;  3O0E A;  2Y0L A;  4C4V A;  3BS0 A;  3C5O A;  3PGR A;  4B61 A;  1GFP A;  1ZHX A;  2PRN A;  3LK4 1;  5GTI O;  3V8U A;  3WI5 A;  4UB6 O;  3AA0 B;  5ADX K;  1ORM A;  2KC0 A;  2IWW A;  1QJP A;  2XMX A;  3AA1 B;  3VE1 A;  3UPG A;  4O3Y A;  1ZHT A;  4GHB A;  1BT9 A;  2K4T A;  2N2M A;  2X9K A;  3HOL A;  2XG6 A;  4FMS A;  4FSP A;  5PRN A;  4U9C A;  3DWO X;  1OPF A;  3LK3 A;  3VY8 X;  2WVP A;  3A0B O;  5G39 A;  4D5U A;  1HXT A;  2W81 C;  4RL9 A;  2R8A A;  1Q9G A; 
#chains in the Genus database with same CATH homology
 3DZM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3DZMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN