The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
45
|
sequence length |
163
|
structure length |
155
|
Chain Sequence |
MNADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTYIPGTYNNGNVYFAWMRFQFL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
PagP crystallized from SDS/cosolvent reveals the route for phospholipid access to the hydrocarbon ruler.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Escherichia coli
|
| molecule keywords |
Protein pagP
|
| total genus |
45
|
| structure length |
155
|
| sequence length |
163
|
| ec nomenclature |
ec
2.3.1.251: Lipid IV(A) palmitoyltransferase. |
| pdb deposition date | 2009-03-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF07017 | PagP | Antimicrobial peptide resistance and lipid A acylation protein PagP |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Porin | Porin |
#chains in the Genus database with same CATH superfamily 1MM5 A; 2JMM A; 1P4T A; 1QJ8 A; 3G7G A; 2K0L A; 3QRC A; 1ORM A; 1QJP A; 1BXW A; 2M07 A; 2ERV A; 2X27 X; 4PUX A; 3QRA A; 2F1V A; 2F1T A; 1THQ A; 1Q9G A; 1Q9F A; 2M06 A; 2LHF A; 1MM4 A; 2N2L A; 1G90 A; 3C5O A; 2GE4 A; 2MNH A; 3GP6 A; 4RLC A; 1QJ9 A; 2MHL A; 2N2M A; #chains in the Genus database with same CATH topology 3A0H O; 2Y0H A; 1MM5 A; 2LFU A; 4AYI D; 3PQS A; 4C4V A; 2JQY A; 2XE1 A; 3SZV A; 1GFP A; 3AA7 B; 4AYN A; 1IZN B; 1ZHZ A; 2KZ7 B; 4N75 A; 2YNK A; 4FRT A; 1ORM A; 1QJP A; 4QQ1 A; 2X27 X; 2ERV A; 4GHB A; 1ZHW A; 1GFN A; 4GCQ A; 3LK4 1; 3SY7 A; 3JCU O; 4G75 A; 2YPV A; 3PRN A; 3BRZ A; 4Z3T A; 4RL9 A; 5H2F O; 1THQ A; 2Y2X A; 4AZL A; 5GV0 A; 1Q9G A; 3WU2 O; 2M06 A; 2W81 C; 4O49 A; 3VY8 X; 5KAI O; 4AUI A; 1G90 A; 5DL8 A; 4JCH A; 5D5D A; 4G76 A; 3PF1 A; 4AKR A; 1YS5 A; 3AAE B; 4U9C A; 1S5L O; 4AYM C; 2J4U P; 4FRX A; 2Y0L A; 2K4T A; 2KDY A; 3AA7 A; 1IZN A; 2KZ7 A; 2Y0K A; 3GP6 A; 4K3C A; 4O3W A; 5GTI O; 3VE2 A; 4C69 X; 4CTD A; 2XG6 A; 3HOE A; 4AKM A; 2N2M A; 3NJT A; 4AFK A; 2AXT O; 2JMM A; 3JTY A; 4RJX A; 4RJW A; 3HW9 A; 3POU A; 4KRA A; 1QJ8 A; 2WJR A; 4C00 A; 1BXW A; 3HOL A; 5G26 A; 4N74 A; 4BUM X; 2F1C X; 2J1N A; 3AA1 B; 3T0S A; 2R4L A; 2R4P A; 4FQE A; 4PUX A; 4KR8 A; 1BT9 A; 5DL7 A; 4F4B A; 4KR4 A; 8PRN A; 3POQ A; 3A0B O; 3LK2 B; 4GF4 A; 5G38 A; 1GFQ A; 2WJQ A; 3AAE A; 2F1T A; 4D5U A; 4FSO A; 1OPF A; 2XE5 A; 5PRN A; 2N2L A; 2R4N A; 2R4O A; 2QTK A; 4E1S A; 2XE3 A; 4D64 A; 6PRN A; 5TIS O; 1MPF A; 3BS0 A; 5G3A A; 2R88 A; 3DWN A; 5B66 O; 3FYX A; 3KVD D; 1HXT A; 3AAA B; 3V8U A; 1T1L A; 4XNK A; 5AFU K; 4O3Y A; 3SYB A; 2MNH A; 2ODJ A; 3VY9 X; 3TZG A; 4RLC A; 3POR A; 4GCP A; 4IL6 O; 3VZU X; 4RLB A; 1P4T A; 2IWV A; 3AA0 B; 3SZD A; 3DZM A; 3LK2 A; 2K0L A; 3QRC A; 1PHO A; 4XNL A; 3LK3 B; 3UU2 A; 5GTH O; 2XE2 A; 1ZHT A; 4AYD C; 1GFO A; 2M07 A; 4O4U A; 3LK4 2; 3BRY A; 3POX A; 4O3Z A; 5ADX K; 3VZW X; 4FSP A; 1ZHX A; 3QRA A; 4FZN A; 4FMS A; 3PGU A; 2WVP A; 7PRN A; 1GFM A; 2R8A A; 2XTR A; 2R89 A; 4AYE C; 3AA6 B; 4B61 A; 3AAA A; 5E79 O; 1Q9F A; 4FOZ A; 2X9K A; 4D65 A; 1MM4 A; 2PRN A; 3VE1 A; 4E1T A; 3VZT X; 5AFU L; 4UB8 O; 3C5O A; 1ZHY A; 3T24 A; 2W80 C; 2GE4 A; 3AA0 A; 1E54 A; 3RBH A; 3HWB A; 3LK3 A; 2XTQ A; 4FZM A; 1QJ9 A; 2O4V A; 2MHL A; 3A2S X; 3KZI O; 2FGR A; 3O0E A; 3SY9 A; 4LSF A; 5FVN A; 2KXP B; 1H6S 1; 3AA1 A; 4PR7 A; 5ADX L; 3G7G A; 4O3X B; 4FZL A; 1HXU A; 4GCS A; 3WI5 A; 1OSM A; 3EMN X; 3AA6 A; 4C4V B; 1BH3 A; 4PJ0 O; 5DL6 A; 4JFB A; 2FGQ X; 4UB6 O; 2F1V A; 3DA4 A; 5EE2 A; 5G39 A; 3PQU A; 2ZLD A; 2XMX A; 3UAQ A; 4FT6 A; 5IYU A; 4N59 A; 1HXX A; 2OMF A; 5T5F A; 2LHF A; 3T20 A; 2POR A; 3NSG A; 2Y7S A; 2KC0 A; 2IWW A; 4LSH A; 5B5E O; 3UPG A; 4FES A; 4FUV A; 3PGR A; 5JDP A; 3K19 A; 3PGS A; 2KXP A; 5DL5 A; 5KAF O; 3DWO X; 3SYS A; 4N58 A; 1T16 A; 4LSI A; 3WI4 A; 4K3B A; 3DA3 A; 4AKR B; 4LSE A; 1PRN A; 4O4X A; 2ZFG A; #chains in the Genus database with same CATH homology 2Y0H A; 1MM5 A; 2LFU A; 4AYI D; 3PQS A; 2XE1 A; 3SZV A; 1GFP A; 3AA7 B; 4AYN A; 1IZN B; 1ZHZ A; 2KZ7 B; 2YNK A; 4FRT A; 1ORM A; 1QJP A; 4QQ1 A; 2X27 X; 2ERV A; 4GHB A; 1ZHW A; 1GFN A; 4GCQ A; 3LK4 1; 3SY7 A; 4G75 A; 2YPV A; 3PRN A; 4Z3T A; 4RL9 A; 1THQ A; 2Y2X A; 4AZL A; 5GV0 A; 1Q9G A; 2M06 A; 2W81 C; 4O49 A; 3VY8 X; 4AUI A; 1G90 A; 5DL8 A; 4JCH A; 5D5D A; 4G76 A; 4AYM C; 4AKR A; 1YS5 A; 3AAE B; 4U9C A; 2J4U P; 4FRX A; 2Y0L A; 2K4T A; 2KDY A; 3AA7 A; 1IZN A; 2KZ7 A; 2Y0K A; 3GP6 A; 4O3W A; 3VE2 A; 4C69 X; 2XG6 A; 3HOE A; 4AKM A; 2N2M A; 4AFK A; 2JMM A; 3JTY A; 4RJX A; 4RJW A; 3HW9 A; 3POU A; 4KRA A; 1QJ8 A; 1BXW A; 3HOL A; 5G26 A; 4BUM X; 2J1N A; 3AA1 B; 3T0S A; 4F4B A; 4PUX A; 8PRN A; 4KR8 A; 1BT9 A; 5DL7 A; 4KR4 A; 3POQ A; 3LK2 B; 4GF4 A; 1GFQ A; 3AAE A; 2F1T A; 4D5U A; 4FSO A; 1OPF A; 2XE5 A; 5PRN A; 2N2L A; 2QTK A; 4E1S A; 2XE3 A; 4D64 A; 6PRN A; 1MPF A; 3FYX A; 3KVD D; 1HXT A; 3AAA B; 3V8U A; 4XNK A; 5AFU K; 4O3Y A; 3SYB A; 2MNH A; 2ODJ A; 3VY9 X; 3TZG A; 4RLC A; 3POR A; 4GCP A; 3VZU X; 4RLB A; 1P4T A; 3AA0 B; 3SZD A; 3LK2 A; 2K0L A; 3QRC A; 1PHO A; 4XNL A; 3LK3 B; 3UU2 A; 2XE2 A; 1ZHT A; 4AYD C; 1GFO A; 2M07 A; 4O4U A; 3LK4 2; 4O3Z A; 3POX A; 5ADX K; 3VZW X; 4FSP A; 1ZHX A; 3QRA A; 4FZN A; 4FMS A; 7PRN A; 1GFM A; 2XTR A; 4AYE C; 4B61 A; 3AA6 B; 3AAA A; 1Q9F A; 4FOZ A; 4D65 A; 1MM4 A; 2PRN A; 3VE1 A; 4E1T A; 3VZT X; 5AFU L; 3C5O A; 1ZHY A; 3T24 A; 2W80 C; 2GE4 A; 3AA0 A; 1E54 A; 3RBH A; 3HWB A; 3LK3 A; 2XTQ A; 4FZM A; 1QJ9 A; 2O4V A; 2MHL A; 3A2S X; 3O0E A; 2FGR A; 3SY9 A; 4LSF A; 5FVN A; 2KXP B; 1H6S 1; 3AA1 A; 5ADX L; 3G7G A; 4O3X B; 4FZL A; 1HXU A; 4GCS A; 3WI5 A; 1OSM A; 3EMN X; 3AA6 A; 1BH3 A; 5DL6 A; 4JFB A; 2FGQ X; 2F1V A; 3DA4 A; 5EE2 A; 3PQU A; 2ZLD A; 2XMX A; 3UAQ A; 4FT6 A; 5IYU A; 4N59 A; 1HXX A; 2OMF A; 5T5F A; 2LHF A; 3T20 A; 2POR A; 3NSG A; 2Y7S A; 2KC0 A; 3UPG A; 4LSH A; 4FES A; 4FUV A; 5JDP A; 3K19 A; 2KXP A; 5DL5 A; 3SYS A; 4N58 A; 4LSI A; 3WI4 A; 3DA3 A; 4AKR B; 4LSE A; 1PRN A; 4O4X A; 2ZFG A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
