3PGRA

Asp348arg mutant of ecfadl
Total Genus 110

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
110
sequence length
424
structure length
376
Chain Sequence
AGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTAWVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKTAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSFKDAYRIALGTTYYYDDNWTFRTGIAFRDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAFHHH
5010015020025030035035030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (1-4)TIV2 (2-5)3H1 (28-32)O1 (6-8)S2 (77-87)TIV3 (15-18)AH1 (10-15)S15 (366-378)TIV6 (24-27)TIV10 (298-322)TIV4 (17-20)TIV9 (236-266)TI1 (19-22)TIV5 (20-23)S8 (221-228)TI9 (284-287)3H2 (34-39)S5 (120-137)S6 (140-158)S1 (44-59)TI10 (354-357)TI4 (109-112)S4 (104-107)TIV7 (70-73)S3 (92-99)TI3 (89-92)3H3 (115-117)AH2 (161-172)TI5 (112-115)TI6 (137-140)S7 (196-218)TIV12 (353-356)3H4 (174-177)TI7 (192-195)S9 (231-234)TI8 (218-221)TIV8 (216-219)S10 (268-271)S11 (274-282)S12 (287-297)S13 (323-336)S14 (339-349)TIV11 (336-339)TVIII1 (359-362)TI11 (358-361)TI2 (62-65)AH3 (179-190)Updating...
connected with : NaN
molecule tags Lipid transport
source organism Escherichia coli k-12
publication title From the Cover: Ligand-gated diffusion across the bacterial outer membrane.
pubmed doi rcsb
molecule keywords Long-chain fatty acid transport protein
total genus 110
structure length 376
sequence length 424
ec nomenclature
pdb deposition date 2010-11-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.60 Mainly Beta Beta Barrel Porin Outer membrane protein transport protein (OMPP1/FadL/TodX) 3pgrA00
2R88A 2R8AA 2R4NA 3PGUA 3BRZA 3DWNA 2R4OA 2R4PA 1T16A 2R89A 1T1LA 2R4LA 3BRYA 3BS0A 3DWOX 3PGSA 3PF1A 3PGRA
chains in the Genus database with same CATH superfamily
1YS5A 4E1TA 2WJRA 3NJTA 5T5FA 4F4BA 1MPFA 3KVDD 4LSIA 4UB8O 1MM4A 4XNKA 1OPFA 1S5LO 4AYEC 1ZHTA 3PQSA 5AFUL 2KXPB 3O0EA 1G90A 3POXA 3WI5A 2KXPA 5KAFO 2PRNA 3LK42 2R4NA 4GCPA 2LHFA 5D5DA 3T24A 4Z3TA 3SYSA 2R4PA 4O4XA 5G38A 5GV0A 1OSMA 2LFUA 3VY8X 5GTHO 2XTQA 3PRNA 4C00A 4FSOA 3QRCA 2IWVA 4FRXA 2KC0A 3VZTX 2QTKA 5G39A 4AYID 1ORMA 5DL7A 3DZMA 2Y7SA 4GCQA 2XG6A 3HOLA 5AFUK 3C5OA 1GFQA 2F1TA 3AA0B 3JCUO 4C4VB 4FZNA 3AA0A 4D64A 3NSGA 5FVNA 1ZHWA 2WVPA 4RLCA 4AKRB 3RBHA 3DA3A 4AKRA 2ZLDA 3AA1B 2R89A 3AA1A 8PRNA 4FESA 4K3CA 2Y0KA 4FSPA 2GE4A 2R8AA 3PORA 4N59A 3AAAB 2OMFA 2J1NA 3AAAA 1HXXA 3HWBA 4JFBA 3BS0A 1ZHZA 2N2LA 3HW9A 3PQUA 5DL8A 2F1CX 5G3AA 2XTRA 4O3YA 4AZLA 5KAIO 2Y2XA 2JMMA 2J4UP 4PUXA 1HXUA 1IZNB 3VY9X 4G75A 1IZNA 3KZIO 3WI4A 3BRYA 2KZ7A 2XE3A 5DL5A 2WJQA 5B5EO 2IWWA 3T20A 1BH3A 2N2MA 4FT6A 3POUA 1PRNA 4FZLA 4C69X 2R4OA 4E1SA 1T1LA 2O4VA 4KR4A 3UAQA 4FZMA 2K0LA 3SYBA 3VZUX 4CTDA 1BXWA 2PORA 1THQA 5E79O 3UU2A 3A0BO 4AYMC 4PJ0O 1H6S1 4KR8A 3TZGA 3AA7B 3DWNA 3AA7A 3SZVA 2M07A 3GP6A 1GFOA 4N75A 4XNLA 3T0SA 2XE5A 3DA4A 5H2FO 4FUVA 2AXTO 2YNKA 4O3WA 2K4TA 5ADXL 2MHLA 4K3BA 3SY9A 4AYDC 3UPGA 2XMXA 5PRNA 3PGRA 4AFKA 2JQYA 3K19A 4IL6O 3QRAA 4N74A 3AA6A 4N58A 4LSHA 2KDYA 4AKMA 2Y0HA 3PGSA 3SY7A 4FQEA 3EMNX 4D5UA 2KZ7B 3JTYA 3LK2B 2W80C 4G76A 5G26A 3LK2A 4UB6O 4AUIA 2X27X 3AAEA 3VZWX 4BUMX 1HXTA 1GFMA 1ZHXA 1QJ9A 1QJ8A 3G7GA 3DWOX 3LK41 1BT9A 2ERVA 4GHBA 1GFNA 4U9CA 2FGQX 4GF4A 4KRAA 4D65A 4RL9A 1Q9FA 5EE2A 4FRTA 2M06A 3SZDA 2FGRA 2R4LA 3POQA 4RJXA 1E54A 5DL6A 2R88A 2XE2A 2F1VA 4FMSA 1ZHYA 1QJPA 3LK3B 4O3XB 3LK3A 4RLBA 6PRNA 1MM5A 3HOEA 3A2SX 3WU2O 2Y0LA 3V8UA 3AA6B 4FOZA 1P4TA 4AYNA 3VE2A 4B61A 5JDPA 4LSFA 4PR7A 4O49A 3VE1A 4GCSA 3A0HO 3AAEB 1PHOA 5IYUA 3PGUA 5GTIO 5ADXK 3BRZA 2X9KA 2ODJA 4C4VA 2W81C 4LSEA 3FYXA 2YPVA 3PF1A 5TISO 1GFPA 2XE1A 1Q9GA 4O4UA 4QQ1A 2MNHA 7PRNA 4JCHA 4O3ZA 1T16A 2ZFGA 4RJWA 5B66O
chains in the Genus database with same CATH topology
2R88A 2R8AA 2R4NA 3PGUA 3BRZA 3DWNA 2R4OA 2R4PA 1T16A 2R89A 1T1LA 2R4LA 3BRYA 3BS0A 3DWOX 3PGSA 3PF1A 3PGRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R88 A;  2R8A A;  2R4N A;  3PGU A;  3BRZ A;  3DWN A;  2R4O A;  2R4P A;  1T16 A;  2R89 A;  1T1L A;  2R4L A;  3BRY A;  3BS0 A;  3DWO X;  3PGS A;  3PF1 A;  3PGR A; 
#chains in the Genus database with same CATH topology
 1YS5 A;  4E1T A;  2WJR A;  3NJT A;  5T5F A;  4F4B A;  1MPF A;  3KVD D;  4LSI A;  4UB8 O;  1MM4 A;  4XNK A;  1OPF A;  1S5L O;  4AYE C;  1ZHT A;  3PQS A;  5AFU L;  2KXP B;  3O0E A;  1G90 A;  3POX A;  3WI5 A;  2KXP A;  5KAF O;  2PRN A;  3LK4 2;  2R4N A;  4GCP A;  2LHF A;  5D5D A;  3T24 A;  4Z3T A;  3SYS A;  2R4P A;  4O4X A;  5G38 A;  5GV0 A;  1OSM A;  2LFU A;  3VY8 X;  5GTH O;  2XTQ A;  3PRN A;  4C00 A;  4FSO A;  3QRC A;  2IWV A;  4FRX A;  2KC0 A;  3VZT X;  2QTK A;  5G39 A;  4AYI D;  1ORM A;  5DL7 A;  3DZM A;  2Y7S A;  4GCQ A;  2XG6 A;  3HOL A;  5AFU K;  3C5O A;  1GFQ A;  2F1T A;  3AA0 B;  3JCU O;  4C4V B;  4FZN A;  3AA0 A;  4D64 A;  3NSG A;  5FVN A;  1ZHW A;  2WVP A;  4RLC A;  4AKR B;  3RBH A;  3DA3 A;  4AKR A;  2ZLD A;  3AA1 B;  2R89 A;  3AA1 A;  8PRN A;  4FES A;  4K3C A;  2Y0K A;  4FSP A;  2GE4 A;  2R8A A;  3POR A;  4N59 A;  3AAA B;  2OMF A;  2J1N A;  3AAA A;  1HXX A;  3HWB A;  4JFB A;  3BS0 A;  1ZHZ A;  2N2L A;  3HW9 A;  3PQU A;  5DL8 A;  2F1C X;  5G3A A;  2XTR A;  4O3Y A;  4AZL A;  5KAI O;  2Y2X A;  2JMM A;  2J4U P;  4PUX A;  1HXU A;  1IZN B;  3VY9 X;  4G75 A;  1IZN A;  3KZI O;  3WI4 A;  3BRY A;  2KZ7 A;  2XE3 A;  5DL5 A;  2WJQ A;  5B5E O;  2IWW A;  3T20 A;  1BH3 A;  2N2M A;  4FT6 A;  3POU A;  1PRN A;  4FZL A;  4C69 X;  2R4O A;  4E1S A;  1T1L A;  2O4V A;  4KR4 A;  3UAQ A;  4FZM A;  2K0L A;  3SYB A;  3VZU X;  4CTD A;  1BXW A;  2POR A;  1THQ A;  5E79 O;  3UU2 A;  3A0B O;  4AYM C;  4PJ0 O;  1H6S 1;  4KR8 A;  3TZG A;  3AA7 B;  3DWN A;  3AA7 A;  3SZV A;  2M07 A;  3GP6 A;  1GFO A;  4N75 A;  4XNL A;  3T0S A;  2XE5 A;  3DA4 A;  5H2F O;  4FUV A;  2AXT O;  2YNK A;  4O3W A;  2K4T A;  5ADX L;  2MHL A;  4K3B A;  3SY9 A;  4AYD C;  3UPG A;  2XMX A;  5PRN A;  3PGR A;  4AFK A;  2JQY A;  3K19 A;  4IL6 O;  3QRA A;  4N74 A;  3AA6 A;  4N58 A;  4LSH A;  2KDY A;  4AKM A;  2Y0H A;  3PGS A;  3SY7 A;  4FQE A;  3EMN X;  4D5U A;  2KZ7 B;  3JTY A;  3LK2 B;  2W80 C;  4G76 A;  5G26 A;  3LK2 A;  4UB6 O;  4AUI A;  2X27 X;  3AAE A;  3VZW X;  4BUM X;  1HXT A;  1GFM A;  1ZHX A;  1QJ9 A;  1QJ8 A;  3G7G A;  3DWO X;  3LK4 1;  1BT9 A;  2ERV A;  4GHB A;  1GFN A;  4U9C A;  2FGQ X;  4GF4 A;  4KRA A;  4D65 A;  4RL9 A;  1Q9F A;  5EE2 A;  4FRT A;  2M06 A;  3SZD A;  2FGR A;  2R4L A;  3POQ A;  4RJX A;  1E54 A;  5DL6 A;  2R88 A;  2XE2 A;  2F1V A;  4FMS A;  1ZHY A;  1QJP A;  3LK3 B;  4O3X B;  3LK3 A;  4RLB A;  6PRN A;  1MM5 A;  3HOE A;  3A2S X;  3WU2 O;  2Y0L A;  3V8U A;  3AA6 B;  4FOZ A;  1P4T A;  4AYN A;  3VE2 A;  4B61 A;  5JDP A;  4LSF A;  4PR7 A;  4O49 A;  3VE1 A;  4GCS A;  3A0H O;  3AAE B;  1PHO A;  5IYU A;  3PGU A;  5GTI O;  5ADX K;  3BRZ A;  2X9K A;  2ODJ A;  4C4V A;  2W81 C;  4LSE A;  3FYX A;  2YPV A;  3PF1 A;  5TIS O;  1GFP A;  2XE1 A;  1Q9G A;  4O4U A;  4QQ1 A;  2MNH A;  7PRN A;  4JCH A;  4O3Z A;  1T16 A;  2ZFG A;  4RJW A;  5B66 O; 
#chains in the Genus database with same CATH homology
 2R88 A;  2R8A A;  2R4N A;  3PGU A;  3BRZ A;  3DWN A;  2R4O A;  2R4P A;  1T16 A;  2R89 A;  1T1L A;  2R4L A;  3BRY A;  3BS0 A;  3DWO X;  3PGS A;  3PF1 A;  3PGR A; 
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