3PRNA

E1m, a104w mutant of rh. blastica porin
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
289
structure length
289
Chain Sequence
MISLNGYGRFGLQYVEDRGVGLEDTIISSRLRINIVGTTETDQGVTFGAKLRMQWDDGDAFAGTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTYDSEMGYEWSSFGDAQSSFFAYNSKYDASGALDNYNGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETVADVGVRFDF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Porin mutants with new channel properties.
pubmed rcsb
molecule tags Membrane protein
source organism Rhodobacter blasticus
molecule keywords PORIN
total genus 75
structure length 289
sequence length 289
ec nomenclature
pdb deposition date 1998-06-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3prnA00
4LSIA 3UPGA 2XE1A 4GCQA 2J4UP 2PORA 1BH3A 2O4VA 1BT9A 2Y2XA 3JTYA 3K19A 1HXTA 4FRTA 4RJXA 3VZUX 3WI4A 4FSPA 1H6S1 5JDPA 3VZWX 3SZVA 1PRNA 3NSGA 8PRNA 3HW9A 4D5UA 4FT6A 3VY9X 2QTKA 4D65A 2XE5A 1OSMA 2ZFGA 1HXXA 4GCSA 3VZTX 4JFBA 2K4TA 3WI5A 3PRNA 2Y0LA 2XE3A 3EMNX 1GFNA 5DL6A 2ZLDA 1GFQA 3SZDA 1GFMA 3T20A 4FOZA 4LSEA 1E54A 1PHOA 1GFPA 5DL5A 5DL7A 2XG6A 2ODJA 3PORA 2FGRA 4C69X 3POXA 2OMFA 4LSHA 5DL8A 4BUMX 3UU2A 3HWBA 3SY9A 4FRXA 4LSFA 4GCPA 2J1NA 3SYSA 6PRNA 5FVNA 2PRNA 3SY7A 2Y0HA 3FYXA 4KR8A 3T0SA 4FSOA 3POQA 3A2SX 2XE2A 7PRNA 3POUA 2Y0KA 3T24A 3VY8X 3SYBA 5PRNA 4FMSA 4KRAA 1HXUA 1GFOA 4RJWA 4AUIA 1OPFA 4D64A 3O0EA 2FGQX 1MPFA 4KR4A
chains in the Genus database with same CATH superfamily
2KDYA 3AAEA 4LSIA 2XE1A 4O3XB 3LK3A 4O49A 4GCQA 5EE2A 3UPGA 4FZLA 4B61A 2X27X 2J4UP 2WVPA 3UAQA 2PORA 5H2FO 1BH3A 2O4VA 1BT9A 4GHBA 3JCUO 2IWWA 2Y2XA 1ZHZA 3VE1A 4CTDA 3NJTA 3JTYA 4K3BA 4IL6O 3K19A 3VE2A 1HXTA 3TZGA 1BXWA 3LK41 3PQUA 4FRTA 4RJXA 3VZUX 4E1TA 2XMXA 4UB6O 3WI4A 5G38A 4FSPA 1H6S1 4O3WA 3VZWX 4PJ0O 3SZVA 3DA3A 4FUVA 1T16A 2W80C 1PRNA 5JDPA 3NSGA 2W81C 2XTRA 3HW9A 4FT6A 4D5UA 4K3CA 1ZHWA 8PRNA 3VY9X 2QTKA 5B5EO 3KVDD 2KZ7B 2XTQA 3QRCA 2XE5A 4D65A 5AFUL 1QJ9A 1OSMA 2ZFGA 4GF4A 1HXXA 2R4OA 4GCSA 5KAFO 2F1VA 2JQYA 4N74A 1S5LO 3VZTX 5TISO 3AA0B 2Y7SA 4JFBA 4U9CA 1ZHXA 2K4TA 5B66O 3WI5A 3PQSA 3PRNA 2KZ7A 2Y0LA 4FZMA 4O4UA 2XE3A 3EMNX 1GFNA 4XNLA 5DL6A 2ZLDA 3C5OA 2LFUA 3AAAB 1GFQA 4AZLA 1T1LA 2F1TA 2X9KA 5ADXL 5IYUA 2N2MA 3A0BO 3SZDA 1GFMA 4N58A 5GTIO 2KXPB 1ZHTA 3AA0A 3KZIO 4AYNA 5G3AA 1G90A 3AA7B 4O3YA 2WJQA 2IWVA 3T20A 4FOZA 4LSEA 5D5DA 2R4PA 1E54A 2R4LA 2R89A 4C00A 1PHOA 1GFPA 5DL5A 3AAAA 1Q9FA 1Q9GA 2M06A 4AYDC 4RLCA 5DL7A 5GV0A 2XG6A 2ODJA 3PORA 2FGRA 3GP6A 2KXPA 4AKMA 4C69X 3HOLA 4G76A 3HOEA 3AA6B 3PGRA 4RL9A 2AXTO 2F1CX 3POXA 4XNKA 1IZNB 2OMFA 3AA7A 3QRAA 4LSHA 4N75A 5DL8A 4PUXA 5GTHO 2MNHA 3AA1B 2R8AA 4BUMX 5ADXK 3DA4A 4O4XA 3UU2A 4C4VB 1MM4A 3HWBA 4AKRB 3G7GA 2YPVA 3LK2B 2R88A 3SY9A 4AYID 2WJRA 3PGSA 4FRXA 2KC0A 3WU2O 3AA6A 2R4NA 4LSFA 1IZNA 3DWNA 5G26A 4GCPA 2J1NA 3V8UA 2YNKA 4E1SA 3SYSA 4FQEA 6PRNA 2M07A 5FVNA 2PRNA 3AA1A 5AFUK 4C4VA 3SY7A 4AKRA 2Y0HA 3FYXA 3LK2A 4KR8A 3T0SA 4PR7A 1QJ8A 3DZMA 1MM5A 4FSOA 3POQA 4QQ1A 5KAIO 5T5FA 3A2SX 2N2LA 2XE2A 4AYMC 2LHFA 4F4BA 7PRNA 2MHLA 4N59A 5G39A 2GE4A 3A0HO 3POUA 2Y0KA 3T24A 3RBHA 3VY8X 3AAEB 3LK3B 3SYBA 1ZHYA 1YS5A 3LK42 5PRNA 1THQA 2K0LA 4AYEC 4FMSA 4KRAA 1HXUA 1GFOA 3BRZA 3BS0A 4FZNA 4G75A 4RJWA 4UB8O 1ORMA 2JMMA 3BRYA 4JCHA 4AFKA 4O3ZA 3DWOX 5E79O 1OPFA 4AUIA 1P4TA 3PF1A 1QJPA 2ERVA 4RLBA 4D64A 4Z3TA 3O0EA 2FGQX 1MPFA 4FESA 3PGUA 4KR4A
chains in the Genus database with same CATH topology
2KDYA 3AAEA 4LSIA 2XE1A 4O3XB 3LK3A 4O49A 4GCQA 5EE2A 3UPGA 4FZLA 4B61A 2X27X 2J4UP 3UAQA 2PORA 1BH3A 2O4VA 1BT9A 4GHBA 2Y2XA 1ZHZA 3VE1A 3JTYA 3K19A 3VE2A 1HXTA 3TZGA 1BXWA 3LK41 3PQUA 4FRTA 4RJXA 3VZUX 4E1TA 2XMXA 3WI4A 4FSPA 1H6S1 4O3WA 3VZWX 5JDPA 3SZVA 3DA3A 4FUVA 2W80C 1PRNA 3NSGA 2W81C 2XTRA 3HW9A 4FT6A 4D5UA 8PRNA 1ZHWA 3VY9X 2QTKA 3KVDD 2KZ7B 2XTQA 3QRCA 2XE5A 4D65A 5AFUL 1QJ9A 1OSMA 2ZFGA 4GF4A 1HXXA 4GCSA 2F1VA 3VZTX 3AA0B 2Y7SA 4JFBA 4U9CA 1ZHXA 2K4TA 3WI5A 3PQSA 3PRNA 2KZ7A 2Y0LA 4FZMA 4O4UA 2XE3A 3EMNX 1GFNA 4XNLA 5DL6A 2ZLDA 3C5OA 2LFUA 3AAAB 1GFQA 4AZLA 5ADXL 2F1TA 2N2MA 3SZDA 1GFMA 4N58A 2KXPB 1ZHTA 3AA0A 4AYNA 1G90A 3AA7B 4O3YA 3T20A 4FOZA 4LSEA 5D5DA 1E54A 1PHOA 1GFPA 5DL5A 3AAAA 1Q9FA 1Q9GA 2M06A 4AYDC 4RLCA 5DL7A 5GV0A 2XG6A 2ODJA 3PORA 2FGRA 3GP6A 2KXPA 4AKMA 4C69X 3HOLA 4G76A 3HOEA 3AA6B 4RL9A 4XNKA 3POXA 1IZNB 2OMFA 3AA7A 3QRAA 4LSHA 5DL8A 4PUXA 2MNHA 3AA1B 4BUMX 5ADXK 3DA4A 4O4XA 3UU2A 1MM4A 3HWBA 4AKRB 3G7GA 2YPVA 3LK2B 3SY9A 4AYID 4FRXA 2KC0A 3AA6A 4LSFA 1IZNA 5G26A 4GCPA 2J1NA 3V8UA 2YNKA 4E1SA 3SYSA 6PRNA 2M07A 5FVNA 2PRNA 3AA1A 5AFUK 3SY7A 4AKRA 2Y0HA 3FYXA 3LK2A 4KR8A 3T0SA 1QJ8A 1MM5A 4FSOA 3POQA 4QQ1A 5T5FA 3A2SX 2N2LA 2XE2A 4AYMC 2LHFA 4F4BA 7PRNA 2MHLA 4N59A 2GE4A 3POUA 2Y0KA 3T24A 3RBHA 3VY8X 3AAEB 3LK3B 3SYBA 1ZHYA 1YS5A 3LK42 5PRNA 1THQA 2K0LA 4AYEC 4FMSA 4KRAA 1HXUA 1GFOA 4G75A 4FZNA 4RJWA 1ORMA 2JMMA 4JCHA 4AFKA 4O3ZA 4AUIA 1OPFA 4Z3TA 1P4TA 4D64A 1QJPA 2ERVA 4RLBA 3O0EA 2FGQX 1MPFA 4FESA 5IYUA 4KR4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LSI A;  3UPG A;  2XE1 A;  4GCQ A;  2J4U P;  2POR A;  1BH3 A;  2O4V A;  1BT9 A;  2Y2X A;  3JTY A;  3K19 A;  1HXT A;  4FRT A;  4RJX A;  3VZU X;  3WI4 A;  4FSP A;  1H6S 1;  5JDP A;  3VZW X;  3SZV A;  1PRN A;  3NSG A;  8PRN A;  3HW9 A;  4D5U A;  4FT6 A;  3VY9 X;  2QTK A;  4D65 A;  2XE5 A;  1OSM A;  2ZFG A;  1HXX A;  4GCS A;  3VZT X;  4JFB A;  2K4T A;  3WI5 A;  3PRN A;  2Y0L A;  2XE3 A;  3EMN X;  1GFN A;  5DL6 A;  2ZLD A;  1GFQ A;  3SZD A;  1GFM A;  3T20 A;  4FOZ A;  4LSE A;  1E54 A;  1PHO A;  1GFP A;  5DL5 A;  5DL7 A;  2XG6 A;  2ODJ A;  3POR A;  2FGR A;  4C69 X;  3POX A;  2OMF A;  4LSH A;  5DL8 A;  4BUM X;  3UU2 A;  3HWB A;  3SY9 A;  4FRX A;  4LSF A;  4GCP A;  2J1N A;  3SYS A;  6PRN A;  5FVN A;  2PRN A;  3SY7 A;  2Y0H A;  3FYX A;  4KR8 A;  3T0S A;  4FSO A;  3POQ A;  3A2S X;  2XE2 A;  7PRN A;  3POU A;  2Y0K A;  3T24 A;  3VY8 X;  3SYB A;  5PRN A;  4FMS A;  4KRA A;  1HXU A;  1GFO A;  4RJW A;  4AUI A;  1OPF A;  4D64 A;  3O0E A;  2FGQ X;  1MPF A;  4KR4 A; 
#chains in the Genus database with same CATH topology
 2KDY A;  3AAE A;  4LSI A;  2XE1 A;  4O3X B;  3LK3 A;  4O49 A;  4GCQ A;  5EE2 A;  3UPG A;  4FZL A;  4B61 A;  2X27 X;  2J4U P;  2WVP A;  3UAQ A;  2POR A;  5H2F O;  1BH3 A;  2O4V A;  1BT9 A;  4GHB A;  3JCU O;  2IWW A;  2Y2X A;  1ZHZ A;  3VE1 A;  4CTD A;  3NJT A;  3JTY A;  4K3B A;  4IL6 O;  3K19 A;  3VE2 A;  1HXT A;  3TZG A;  1BXW A;  3LK4 1;  3PQU A;  4FRT A;  4RJX A;  3VZU X;  4E1T A;  2XMX A;  4UB6 O;  3WI4 A;  5G38 A;  4FSP A;  1H6S 1;  4O3W A;  3VZW X;  4PJ0 O;  3SZV A;  3DA3 A;  4FUV A;  1T16 A;  2W80 C;  1PRN A;  5JDP A;  3NSG A;  2W81 C;  2XTR A;  3HW9 A;  4FT6 A;  4D5U A;  4K3C A;  1ZHW A;  8PRN A;  3VY9 X;  2QTK A;  5B5E O;  3KVD D;  2KZ7 B;  2XTQ A;  3QRC A;  2XE5 A;  4D65 A;  5AFU L;  1QJ9 A;  1OSM A;  2ZFG A;  4GF4 A;  1HXX A;  2R4O A;  4GCS A;  5KAF O;  2F1V A;  2JQY A;  4N74 A;  1S5L O;  3VZT X;  5TIS O;  3AA0 B;  2Y7S A;  4JFB A;  4U9C A;  1ZHX A;  2K4T A;  5B66 O;  3WI5 A;  3PQS A;  3PRN A;  2KZ7 A;  2Y0L A;  4FZM A;  4O4U A;  2XE3 A;  3EMN X;  1GFN A;  4XNL A;  5DL6 A;  2ZLD A;  3C5O A;  2LFU A;  3AAA B;  1GFQ A;  4AZL A;  1T1L A;  2F1T A;  2X9K A;  5ADX L;  5IYU A;  2N2M A;  3A0B O;  3SZD A;  1GFM A;  4N58 A;  5GTI O;  2KXP B;  1ZHT A;  3AA0 A;  3KZI O;  4AYN A;  5G3A A;  1G90 A;  3AA7 B;  4O3Y A;  2WJQ A;  2IWV A;  3T20 A;  4FOZ A;  4LSE A;  5D5D A;  2R4P A;  1E54 A;  2R4L A;  2R89 A;  4C00 A;  1PHO A;  1GFP A;  5DL5 A;  3AAA A;  1Q9F A;  1Q9G A;  2M06 A;  4AYD C;  4RLC A;  5DL7 A;  5GV0 A;  2XG6 A;  2ODJ A;  3POR A;  2FGR A;  3GP6 A;  2KXP A;  4AKM A;  4C69 X;  3HOL A;  4G76 A;  3HOE A;  3AA6 B;  3PGR A;  4RL9 A;  2AXT O;  2F1C X;  3POX A;  4XNK A;  1IZN B;  2OMF A;  3AA7 A;  3QRA A;  4LSH A;  4N75 A;  5DL8 A;  4PUX A;  5GTH O;  2MNH A;  3AA1 B;  2R8A A;  4BUM X;  5ADX K;  3DA4 A;  4O4X A;  3UU2 A;  4C4V B;  1MM4 A;  3HWB A;  4AKR B;  3G7G A;  2YPV A;  3LK2 B;  2R88 A;  3SY9 A;  4AYI D;  2WJR A;  3PGS A;  4FRX A;  2KC0 A;  3WU2 O;  3AA6 A;  2R4N A;  4LSF A;  1IZN A;  3DWN A;  5G26 A;  4GCP A;  2J1N A;  3V8U A;  2YNK A;  4E1S A;  3SYS A;  4FQE A;  6PRN A;  2M07 A;  5FVN A;  2PRN A;  3AA1 A;  5AFU K;  4C4V A;  3SY7 A;  4AKR A;  2Y0H A;  3FYX A;  3LK2 A;  4KR8 A;  3T0S A;  4PR7 A;  1QJ8 A;  3DZM A;  1MM5 A;  4FSO A;  3POQ A;  4QQ1 A;  5KAI O;  5T5F A;  3A2S X;  2N2L A;  2XE2 A;  4AYM C;  2LHF A;  4F4B A;  7PRN A;  2MHL A;  4N59 A;  5G39 A;  2GE4 A;  3A0H O;  3POU A;  2Y0K A;  3T24 A;  3RBH A;  3VY8 X;  3AAE B;  3LK3 B;  3SYB A;  1ZHY A;  1YS5 A;  3LK4 2;  5PRN A;  1THQ A;  2K0L A;  4AYE C;  4FMS A;  4KRA A;  1HXU A;  1GFO A;  3BRZ A;  3BS0 A;  4FZN A;  4G75 A;  4RJW A;  4UB8 O;  1ORM A;  2JMM A;  3BRY A;  4JCH A;  4AFK A;  4O3Z A;  3DWO X;  5E79 O;  1OPF A;  4AUI A;  1P4T A;  3PF1 A;  1QJP A;  2ERV A;  4RLB A;  4D64 A;  4Z3T A;  3O0E A;  2FGQ X;  1MPF A;  4FES A;  3PGU A;  4KR4 A; 
#chains in the Genus database with same CATH homology
 2KDY A;  3AAE A;  4LSI A;  2XE1 A;  4O3X B;  3LK3 A;  4O49 A;  4GCQ A;  5EE2 A;  3UPG A;  4FZL A;  4B61 A;  2X27 X;  2J4U P;  3UAQ A;  2POR A;  1BH3 A;  2O4V A;  1BT9 A;  4GHB A;  2Y2X A;  1ZHZ A;  3VE1 A;  3JTY A;  3K19 A;  3VE2 A;  1HXT A;  3TZG A;  1BXW A;  3LK4 1;  3PQU A;  4FRT A;  4RJX A;  3VZU X;  4E1T A;  2XMX A;  3WI4 A;  4FSP A;  1H6S 1;  4O3W A;  3VZW X;  5JDP A;  3SZV A;  3DA3 A;  4FUV A;  2W80 C;  1PRN A;  3NSG A;  2W81 C;  2XTR A;  3HW9 A;  4FT6 A;  4D5U A;  8PRN A;  1ZHW A;  3VY9 X;  2QTK A;  3KVD D;  2KZ7 B;  2XTQ A;  3QRC A;  2XE5 A;  4D65 A;  5AFU L;  1QJ9 A;  1OSM A;  2ZFG A;  4GF4 A;  1HXX A;  4GCS A;  2F1V A;  3VZT X;  3AA0 B;  2Y7S A;  4JFB A;  4U9C A;  1ZHX A;  2K4T A;  3WI5 A;  3PQS A;  3PRN A;  2KZ7 A;  2Y0L A;  4FZM A;  4O4U A;  2XE3 A;  3EMN X;  1GFN A;  4XNL A;  5DL6 A;  2ZLD A;  3C5O A;  2LFU A;  3AAA B;  1GFQ A;  4AZL A;  5ADX L;  2F1T A;  2N2M A;  3SZD A;  1GFM A;  4N58 A;  2KXP B;  1ZHT A;  3AA0 A;  4AYN A;  1G90 A;  3AA7 B;  4O3Y A;  3T20 A;  4FOZ A;  4LSE A;  5D5D A;  1E54 A;  1PHO A;  1GFP A;  5DL5 A;  3AAA A;  1Q9F A;  1Q9G A;  2M06 A;  4AYD C;  4RLC A;  5DL7 A;  5GV0 A;  2XG6 A;  2ODJ A;  3POR A;  2FGR A;  3GP6 A;  2KXP A;  4AKM A;  4C69 X;  3HOL A;  4G76 A;  3HOE A;  3AA6 B;  4RL9 A;  4XNK A;  3POX A;  1IZN B;  2OMF A;  3AA7 A;  3QRA A;  4LSH A;  5DL8 A;  4PUX A;  2MNH A;  3AA1 B;  4BUM X;  5ADX K;  3DA4 A;  4O4X A;  3UU2 A;  1MM4 A;  3HWB A;  4AKR B;  3G7G A;  2YPV A;  3LK2 B;  3SY9 A;  4AYI D;  4FRX A;  2KC0 A;  3AA6 A;  4LSF A;  1IZN A;  5G26 A;  4GCP A;  2J1N A;  3V8U A;  2YNK A;  4E1S A;  3SYS A;  6PRN A;  2M07 A;  5FVN A;  2PRN A;  3AA1 A;  5AFU K;  3SY7 A;  4AKR A;  2Y0H A;  3FYX A;  3LK2 A;  4KR8 A;  3T0S A;  1QJ8 A;  1MM5 A;  4FSO A;  3POQ A;  4QQ1 A;  5T5F A;  3A2S X;  2N2L A;  2XE2 A;  4AYM C;  2LHF A;  4F4B A;  7PRN A;  2MHL A;  4N59 A;  2GE4 A;  3POU A;  2Y0K A;  3T24 A;  3RBH A;  3VY8 X;  3AAE B;  3LK3 B;  3SYB A;  1ZHY A;  1YS5 A;  3LK4 2;  5PRN A;  1THQ A;  2K0L A;  4AYE C;  4FMS A;  4KRA A;  1HXU A;  1GFO A;  4G75 A;  4FZN A;  4RJW A;  1ORM A;  2JMM A;  4JCH A;  4AFK A;  4O3Z A;  4AUI A;  1OPF A;  4Z3T A;  1P4T A;  4D64 A;  1QJP A;  2ERV A;  4RLB A;  3O0E A;  2FGQ X;  1MPF A;  4FES A;  5IYU A;  4KR4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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