3SZVA

Crystal structure of pseudomonas aeruginosa occk3 (opdo)
Total Genus 104

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
393
structure length
364
Chain Sequence
ENLYFQGLEDLVEDSHASLELRNFYFNRDFRDEWAQGFLLRLESGFSEGTVGFGVDAIGLLGFKLDSQDDYAKLGLTAKARVSNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSANRIGGRSDAFDFAGGDYRLTPALTASLHQGRLKDIYRQTFAGLVHTLDLGRSLKSDLRFARASEDGGFRELDNRAFGALFSLRLGAHAVAAGYQRISGDDPYPYIAGSDPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVARGAANDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNFANDLDENRLILSYSLALW
5010015020025030035035030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (-7-5)EMPTYTII5 (350-353)TI6 (348-351)TIV10 (347-350)S2 (32-42)TII1 (139-142)TI1 (114-117)S4 (89-100)S6 (113-114)S5 (103-110)S17 (254-264)S8 (128-139)TIV1 (100-103)TI2 (154-157)S9 (142-153)TII'2 (251-254)S16 (239-251)S10 (163-166)S12 (175-185)S11 (169-172)TIV2 (165-168)S13 (188-197)TI3 (185-188)S14 (201-213)TIV4 (183-186)S15 (219-231)TII2 (197-200)TIV6 (213-218)TII'1 (232-235)TIV8 (283-286)TI4 (279-282)TII3 (272-275)S20 (312-326)S21 (329-345)3H1 (305-307)S18 (271-272)S19 (294-303)TI5 (309-312)TII4 (290-293)TIV9 (325-328)S22 (353-364)S1 (7-21)S7 (117-118)S3 (50-64)Updating...
connected with : NaN
molecule tags Membrane protein
source organism Pseudomonas aeruginosa
publication title Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
pubmed doi rcsb
molecule keywords Pyroglutatmate porin OpdO
total genus 104
structure length 364
sequence length 393
ec nomenclature
pdb deposition date 2011-07-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3szvA01
4FOZA 4FSOA 3SYBA 4D64A 4D65A 2XE5A 2ZLDA 4FRXA 3UU2A 4GCQA 2Y0LA 3FYXA 1BH3A 3SYSA 1HXUA 4LSHA 3SZDA 2K4TA 1E54A 1GFOA 5DL5A 3HW9A 3POXA 3SY9A 3EMNX 1OSMA 4LSEA 3VY9X 5DL6A 4GCSA 1MPFA 2Y0KA 2XE1A 4KR8A 4LSIA 1H6S1 3JTYA 4FRTA 5PRNA 3A2SX 7PRNA 1BT9A 5JDPA 4JFBA 3POUA 3T20A 4LSFA 2OMFA 1PRNA 2Y2XA 8PRNA 4KR4A 3UPGA 4FSPA 1PHOA 1OPFA 2O4VA 2XE2A 2PRNA 3VY8X 4RJXA 2ODJA 3WI4A 3T0SA 4C69X 5FVNA 3VZWX 4RJWA 4KRAA 3VZUX 1GFPA 2XE3A 3O0EA 1GFMA 3NSGA 4D5UA 2J1NA 2J4UP 2XG6A 4FMSA 3PRNA 2ZFGA 3K19A 1GFNA 2QTKA 1GFQA 5DL7A 3SZVA 4FT6A 3HWBA 3SY7A 3WI5A 6PRNA 2FGQX 2FGRA 4AUIA 1HXXA 3POQA 4BUMX 2Y0HA 2PORA 3PORA 3VZTX 5DL8A 4GCPA 1HXTA 3T24A
chains in the Genus database with same CATH superfamily
4FOZA 4FSOA 3SYBA 4N59A 5KAFO 3KVDD 2X9KA 4D64A 2KZ7B 3A0BO 3AA1B 4D65A 2XE5A 4PUXA 2ZLDA 3AA6B 4FRXA 4AYID 2KXPB 2AXTO 3DWOX 2GE4A 2Y7SA 4N75A 4O3ZA 3UU2A 4GCQA 4UB6O 5G39A 5IYUA 4AYMC 2Y0LA 3FYXA 1BH3A 4AYEC 1THQA 3SYSA 1QJPA 1HXUA 3UAQA 3HOLA 4LSHA 3SZDA 4C4VB 4CTDA 5GTHO 4O4UA 2K4TA 4AYNA 1E54A 2F1VA 3QRAA 3PGSA 1GFOA 5DL5A 2IWWA 3HW9A 2F1TA 3LK41 3POXA 3EMNX 2W81C 1OSMA 3SY9A 4C00A 4LSEA 4IL6O 3VY9X 3TZGA 1S5LO 3G7GA 2R88A 3LK2A 4FQEA 4GCSA 1MPFA 4O3WA 2JQYA 4RLBA 5DL6A 3V8UA 2Y0KA 2XE1A 2M06A 2R4NA 3BS0A 4KR8A 8PRNA 4LSIA 3AA0A 1H6S1 3DA4A 4FESA 4O3YA 1ZHWA 4FZNA 1YS5A 1ORMA 5D5DA 5G26A 5H2FO 3JTYA 2M07A 4AYDC 4FRTA 4GHBA 4JCHA 4PJ0O 1ZHYA 5PRNA 2K0LA 2X27X 5GTIO 2ERVA 3A2SX 7PRNA 1BT9A 3PGRA 5JDPA 4JFBA 2W80C 5KAIO 2R4OA 5G3AA 3RBHA 2R4PA 3AAAA 3POUA 1P4TA 3LK2B 1ZHTA 4XNKA 4LSFA 3T20A 2OMFA 1PRNA 2Y2XA 2WVPA 3QRCA 4FZMA 4N58A 3DA3A 2XTRA 4B61A 4AKMA 3AAEB 3AA0B 2KDYA 3AA7A 4KR4A 4O3XB 4UB8O 5AFUL 3UPGA 2R8AA 2R89A 3PF1A 3LK3A 5TISO 2WJRA 1ZHXA 1T1LA 1PHOA 4FSPA 4AFKA 1OPFA 2O4VA 3KZIO 2XMXA 3AAEA 5EE2A 2N2MA 3AAAB 4FZLA 5GV0A 3BRZA 2XE2A 3PQSA 2R4LA 2PRNA 3VY8X 4O49A 2YPVA 4RJXA 3VZUX 4E1SA 2ODJA 4PR7A 3WI4A 4F4BA 5AFUK 3T0SA 3AA7B 4K3BA 1MM4A 4C69X 5FVNA 4AKRA 5B66O 3VZWX 1Q9FA 4RJWA 2F1CX 3DZMA 4KRAA 1BXWA 3LK3B 1IZNA 4RL9A 1GFPA 2XE3A 2WJQA 3GP6A 3NJTA 3O0EA 5T5FA 3DWNA 1GFMA 3NSGA 3PGUA 3HOEA 4D5UA 2N2LA 4Z3TA 5ADXL 2J1NA 3LK42 2J4UP 2XG6A 4FMSA 4AZLA 3PRNA 1QJ8A 2ZFGA 3K19A 1GFNA 2QTKA 1GFQA 4QQ1A 5DL7A 4AKRB 2XTQA 3SZVA 3A0HO 2KC0A 3JCUO 4E1TA 3VE1A 1MM5A 4FT6A 5G38A 4U9CA 1IZNB 3C5OA 3HWBA 4O4XA 3SY7A 3WI5A 6PRNA 1G90A 5ADXK 2FGQX 2FGRA 4AUIA 2IWVA 5B5EO 1HXXA 2KZ7A 2LHFA 3AA1A 3POQA 4G75A 4K3CA 4BUMX 3AA6A 4RLCA 2MHLA 2Y0HA 4GF4A 3WU2O 4G76A 2KXPA 5E79O 2YNKA 2PORA 4XNLA 1Q9GA 3PORA 3VZTX 2MNHA 2LFUA 5DL8A 1QJ9A 4N74A 3BRYA 1T16A 3PQUA 1ZHZA 3VE2A 2JMMA 4GCPA 4FUVA 4C4VA 1HXTA 3T24A
chains in the Genus database with same CATH topology
4FOZA 4FSOA 3SYBA 4N59A 3KVDD 4D64A 2KZ7B 3AA1B 4D65A 2XE5A 4PUXA 2ZLDA 3AA6B 4FRXA 4AYID 2KXPB 2GE4A 2Y7SA 4O3ZA 3UU2A 4GCQA 5IYUA 4AYMC 2Y0LA 3FYXA 1BH3A 1THQA 3SYSA 1QJPA 1HXUA 3UAQA 3HOLA 4LSHA 3SZDA 4O4UA 2K4TA 4AYNA 1E54A 2F1VA 3QRAA 1GFOA 5DL5A 3HW9A 2F1TA 3LK41 3POXA 3EMNX 2W81C 1OSMA 3SY9A 4LSEA 3VY9X 3TZGA 3G7GA 3LK2A 4GCSA 4O3WA 5DL6A 1MPFA 3V8UA 4AYEC 4RLBA 2Y0KA 2XE1A 2M06A 4KR8A 4LSIA 3AA0A 1H6S1 3DA4A 4FESA 4O3YA 1ZHWA 4FZNA 1YS5A 1ORMA 5D5DA 5G26A 3JTYA 2M07A 4AYDC 4FRTA 4GHBA 4JCHA 1ZHYA 5PRNA 2K0LA 2X27X 2ERVA 3A2SX 7PRNA 1BT9A 5JDPA 4JFBA 2W80C 3RBHA 3POUA 3AAAA 3T20A 1P4TA 3LK2B 1ZHTA 4XNKA 4LSFA 2OMFA 1PRNA 2Y2XA 8PRNA 3QRCA 4FZMA 4N58A 3DA3A 2XTRA 4B61A 4AKMA 3AAEB 3AA0B 2KDYA 3AA7A 4KR4A 4O3XB 5AFUL 3UPGA 3LK3A 1ZHXA 4FSPA 1PHOA 4AFKA 1OPFA 2O4VA 2XMXA 3AAEA 5EE2A 2N2MA 3AAAB 4FZLA 5GV0A 2XE2A 3PQSA 2PRNA 3VY8X 4O49A 2YPVA 4RJXA 4E1SA 5AFUK 2ODJA 4F4BA 3WI4A 3T0SA 3AA7B 1MM4A 4C69X 5FVNA 4AKRA 3VZWX 1Q9FA 4RJWA 4KRAA 1BXWA 3LK3B 1IZNA 4RL9A 1GFPA 2XE3A 3GP6A 3O0EA 5T5FA 3VZUX 1GFMA 3NSGA 3HOEA 4D5UA 2N2LA 4Z3TA 5ADXL 2J1NA 3LK42 2J4UP 2XG6A 4FMSA 4AZLA 3PRNA 1QJ8A 2ZFGA 3K19A 1GFNA 2QTKA 1GFQA 4QQ1A 5DL7A 4AKRB 2XTQA 3SZVA 2KC0A 4E1TA 3VE1A 1MM5A 4FT6A 4U9CA 1IZNB 3C5OA 3HWBA 4O4XA 3SY7A 3WI5A 6PRNA 5ADXK 2FGQX 2FGRA 4AUIA 1HXXA 2KZ7A 2LHFA 3AA1A 3POQA 4G75A 4BUMX 1G90A 3AA6A 4RLCA 2MHLA 2Y0HA 4GF4A 4G76A 2KXPA 2YNKA 2PORA 4XNLA 1Q9GA 3PORA 3VZTX 2MNHA 2LFUA 5DL8A 1QJ9A 3VE2A 3PQUA 1ZHZA 2JMMA 4GCPA 4FUVA 1HXTA 3T24A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FOZ A;  4FSO A;  3SYB A;  4D64 A;  4D65 A;  2XE5 A;  2ZLD A;  4FRX A;  3UU2 A;  4GCQ A;  2Y0L A;  3FYX A;  1BH3 A;  3SYS A;  1HXU A;  4LSH A;  3SZD A;  2K4T A;  1E54 A;  1GFO A;  5DL5 A;  3HW9 A;  3POX A;  3SY9 A;  3EMN X;  1OSM A;  4LSE A;  3VY9 X;  5DL6 A;  4GCS A;  1MPF A;  2Y0K A;  2XE1 A;  4KR8 A;  4LSI A;  1H6S 1;  3JTY A;  4FRT A;  5PRN A;  3A2S X;  7PRN A;  1BT9 A;  5JDP A;  4JFB A;  3POU A;  3T20 A;  4LSF A;  2OMF A;  1PRN A;  2Y2X A;  8PRN A;  4KR4 A;  3UPG A;  4FSP A;  1PHO A;  1OPF A;  2O4V A;  2XE2 A;  2PRN A;  3VY8 X;  4RJX A;  2ODJ A;  3WI4 A;  3T0S A;  4C69 X;  5FVN A;  3VZW X;  4RJW A;  4KRA A;  3VZU X;  1GFP A;  2XE3 A;  3O0E A;  1GFM A;  3NSG A;  4D5U A;  2J1N A;  2J4U P;  2XG6 A;  4FMS A;  3PRN A;  2ZFG A;  3K19 A;  1GFN A;  2QTK A;  1GFQ A;  5DL7 A;  3SZV A;  4FT6 A;  3HWB A;  3SY7 A;  3WI5 A;  6PRN A;  2FGQ X;  2FGR A;  4AUI A;  1HXX A;  3POQ A;  4BUM X;  2Y0H A;  2POR A;  3POR A;  3VZT X;  5DL8 A;  4GCP A;  1HXT A;  3T24 A; 
#chains in the Genus database with same CATH topology
 4FOZ A;  4FSO A;  3SYB A;  4N59 A;  5KAF O;  3KVD D;  2X9K A;  4D64 A;  2KZ7 B;  3A0B O;  3AA1 B;  4D65 A;  2XE5 A;  4PUX A;  2ZLD A;  3AA6 B;  4FRX A;  4AYI D;  2KXP B;  2AXT O;  3DWO X;  2GE4 A;  2Y7S A;  4N75 A;  4O3Z A;  3UU2 A;  4GCQ A;  4UB6 O;  5G39 A;  5IYU A;  4AYM C;  2Y0L A;  3FYX A;  1BH3 A;  4AYE C;  1THQ A;  3SYS A;  1QJP A;  1HXU A;  3UAQ A;  3HOL A;  4LSH A;  3SZD A;  4C4V B;  4CTD A;  5GTH O;  4O4U A;  2K4T A;  4AYN A;  1E54 A;  2F1V A;  3QRA A;  3PGS A;  1GFO A;  5DL5 A;  2IWW A;  3HW9 A;  2F1T A;  3LK4 1;  3POX A;  3EMN X;  2W81 C;  1OSM A;  3SY9 A;  4C00 A;  4LSE A;  4IL6 O;  3VY9 X;  3TZG A;  1S5L O;  3G7G A;  2R88 A;  3LK2 A;  4FQE A;  4GCS A;  1MPF A;  4O3W A;  2JQY A;  4RLB A;  5DL6 A;  3V8U A;  2Y0K A;  2XE1 A;  2M06 A;  2R4N A;  3BS0 A;  4KR8 A;  8PRN A;  4LSI A;  3AA0 A;  1H6S 1;  3DA4 A;  4FES A;  4O3Y A;  1ZHW A;  4FZN A;  1YS5 A;  1ORM A;  5D5D A;  5G26 A;  5H2F O;  3JTY A;  2M07 A;  4AYD C;  4FRT A;  4GHB A;  4JCH A;  4PJ0 O;  1ZHY A;  5PRN A;  2K0L A;  2X27 X;  5GTI O;  2ERV A;  3A2S X;  7PRN A;  1BT9 A;  3PGR A;  5JDP A;  4JFB A;  2W80 C;  5KAI O;  2R4O A;  5G3A A;  3RBH A;  2R4P A;  3AAA A;  3POU A;  1P4T A;  3LK2 B;  1ZHT A;  4XNK A;  4LSF A;  3T20 A;  2OMF A;  1PRN A;  2Y2X A;  2WVP A;  3QRC A;  4FZM A;  4N58 A;  3DA3 A;  2XTR A;  4B61 A;  4AKM A;  3AAE B;  3AA0 B;  2KDY A;  3AA7 A;  4KR4 A;  4O3X B;  4UB8 O;  5AFU L;  3UPG A;  2R8A A;  2R89 A;  3PF1 A;  3LK3 A;  5TIS O;  2WJR A;  1ZHX A;  1T1L A;  1PHO A;  4FSP A;  4AFK A;  1OPF A;  2O4V A;  3KZI O;  2XMX A;  3AAE A;  5EE2 A;  2N2M A;  3AAA B;  4FZL A;  5GV0 A;  3BRZ A;  2XE2 A;  3PQS A;  2R4L A;  2PRN A;  3VY8 X;  4O49 A;  2YPV A;  4RJX A;  3VZU X;  4E1S A;  2ODJ A;  4PR7 A;  3WI4 A;  4F4B A;  5AFU K;  3T0S A;  3AA7 B;  4K3B A;  1MM4 A;  4C69 X;  5FVN A;  4AKR A;  5B66 O;  3VZW X;  1Q9F A;  4RJW A;  2F1C X;  3DZM A;  4KRA A;  1BXW A;  3LK3 B;  1IZN A;  4RL9 A;  1GFP A;  2XE3 A;  2WJQ A;  3GP6 A;  3NJT A;  3O0E A;  5T5F A;  3DWN A;  1GFM A;  3NSG A;  3PGU A;  3HOE A;  4D5U A;  2N2L A;  4Z3T A;  5ADX L;  2J1N A;  3LK4 2;  2J4U P;  2XG6 A;  4FMS A;  4AZL A;  3PRN A;  1QJ8 A;  2ZFG A;  3K19 A;  1GFN A;  2QTK A;  1GFQ A;  4QQ1 A;  5DL7 A;  4AKR B;  2XTQ A;  3SZV A;  3A0H O;  2KC0 A;  3JCU O;  4E1T A;  3VE1 A;  1MM5 A;  4FT6 A;  5G38 A;  4U9C A;  1IZN B;  3C5O A;  3HWB A;  4O4X A;  3SY7 A;  3WI5 A;  6PRN A;  1G90 A;  5ADX K;  2FGQ X;  2FGR A;  4AUI A;  2IWV A;  5B5E O;  1HXX A;  2KZ7 A;  2LHF A;  3AA1 A;  3POQ A;  4G75 A;  4K3C A;  4BUM X;  3AA6 A;  4RLC A;  2MHL A;  2Y0H A;  4GF4 A;  3WU2 O;  4G76 A;  2KXP A;  5E79 O;  2YNK A;  2POR A;  4XNL A;  1Q9G A;  3POR A;  3VZT X;  2MNH A;  2LFU A;  5DL8 A;  1QJ9 A;  4N74 A;  3BRY A;  1T16 A;  3PQU A;  1ZHZ A;  3VE2 A;  2JMM A;  4GCP A;  4FUV A;  4C4V A;  1HXT A;  3T24 A; 
#chains in the Genus database with same CATH homology
 4FOZ A;  4FSO A;  3SYB A;  4N59 A;  3KVD D;  4D64 A;  2KZ7 B;  3AA1 B;  4D65 A;  2XE5 A;  4PUX A;  2ZLD A;  3AA6 B;  4FRX A;  4AYI D;  2KXP B;  2GE4 A;  2Y7S A;  4O3Z A;  3UU2 A;  4GCQ A;  5IYU A;  4AYM C;  2Y0L A;  3FYX A;  1BH3 A;  1THQ A;  3SYS A;  1QJP A;  1HXU A;  3UAQ A;  3HOL A;  4LSH A;  3SZD A;  4O4U A;  2K4T A;  4AYN A;  1E54 A;  2F1V A;  3QRA A;  1GFO A;  5DL5 A;  3HW9 A;  2F1T A;  3LK4 1;  3POX A;  3EMN X;  2W81 C;  1OSM A;  3SY9 A;  4LSE A;  3VY9 X;  3TZG A;  3G7G A;  3LK2 A;  4GCS A;  4O3W A;  5DL6 A;  1MPF A;  3V8U A;  4AYE C;  4RLB A;  2Y0K A;  2XE1 A;  2M06 A;  4KR8 A;  4LSI A;  3AA0 A;  1H6S 1;  3DA4 A;  4FES A;  4O3Y A;  1ZHW A;  4FZN A;  1YS5 A;  1ORM A;  5D5D A;  5G26 A;  3JTY A;  2M07 A;  4AYD C;  4FRT A;  4GHB A;  4JCH A;  1ZHY A;  5PRN A;  2K0L A;  2X27 X;  2ERV A;  3A2S X;  7PRN A;  1BT9 A;  5JDP A;  4JFB A;  2W80 C;  3RBH A;  3POU A;  3AAA A;  3T20 A;  1P4T A;  3LK2 B;  1ZHT A;  4XNK A;  4LSF A;  2OMF A;  1PRN A;  2Y2X A;  8PRN A;  3QRC A;  4FZM A;  4N58 A;  3DA3 A;  2XTR A;  4B61 A;  4AKM A;  3AAE B;  3AA0 B;  2KDY A;  3AA7 A;  4KR4 A;  4O3X B;  5AFU L;  3UPG A;  3LK3 A;  1ZHX A;  4FSP A;  1PHO A;  4AFK A;  1OPF A;  2O4V A;  2XMX A;  3AAE A;  5EE2 A;  2N2M A;  3AAA B;  4FZL A;  5GV0 A;  2XE2 A;  3PQS A;  2PRN A;  3VY8 X;  4O49 A;  2YPV A;  4RJX A;  4E1S A;  5AFU K;  2ODJ A;  4F4B A;  3WI4 A;  3T0S A;  3AA7 B;  1MM4 A;  4C69 X;  5FVN A;  4AKR A;  3VZW X;  1Q9F A;  4RJW A;  4KRA A;  1BXW A;  3LK3 B;  1IZN A;  4RL9 A;  1GFP A;  2XE3 A;  3GP6 A;  3O0E A;  5T5F A;  3VZU X;  1GFM A;  3NSG A;  3HOE A;  4D5U A;  2N2L A;  4Z3T A;  5ADX L;  2J1N A;  3LK4 2;  2J4U P;  2XG6 A;  4FMS A;  4AZL A;  3PRN A;  1QJ8 A;  2ZFG A;  3K19 A;  1GFN A;  2QTK A;  1GFQ A;  4QQ1 A;  5DL7 A;  4AKR B;  2XTQ A;  3SZV A;  2KC0 A;  4E1T A;  3VE1 A;  1MM5 A;  4FT6 A;  4U9C A;  1IZN B;  3C5O A;  3HWB A;  4O4X A;  3SY7 A;  3WI5 A;  6PRN A;  5ADX K;  2FGQ X;  2FGR A;  4AUI A;  1HXX A;  2KZ7 A;  2LHF A;  3AA1 A;  3POQ A;  4G75 A;  4BUM X;  1G90 A;  3AA6 A;  4RLC A;  2MHL A;  2Y0H A;  4GF4 A;  4G76 A;  2KXP A;  2YNK A;  2POR A;  4XNL A;  1Q9G A;  3POR A;  3VZT X;  2MNH A;  2LFU A;  5DL8 A;  1QJ9 A;  3VE2 A;  3PQU A;  1ZHZ A;  2JMM A;  4GCP A;  4FUV A;  1HXT A;  3T24 A; 
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