3TZGA

Crystal structure of a porin-like protein (bvu_2266) from bacteroides vulgatus atcc 8482 at 2.80 a resolution
Total Genus 54

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
245
structure length
239
Chain Sequence
DTYVTKVTDLTGEEEQVLKLEYDRDGKIIKYGDTPVRYEGDQITIGQMNKLCNVTFQIGKGKARESRARCMLKVGEEVYEADKQTVYDYKGDTIFINSDYRATSDYRFLKKVQGKYVFDQLGRLKEVMTVFTEANDSVSSCHTYYNYDNNINYQANLNLQAYVIDYDGVDSFFYFLLNLGQLRNRTALPNDIGYCMNHGLSTYNVHANYRLDDENPVRIEVLYNYTKLLSRIDLSYNPL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI5 (180-183)TI6 (211-214)TI'2 (230-233)S15 (224-228)S3 (55-58)TII'1 (38-41)S2 (44-49)TI1 (50-53)S4 (61-66)TIV1 (57-60)S6 (86-92)S12 (171-179)TIV2 (74-84)S11 (157-166)TI4 (166-169)TIV3 (91-94)S8 (111-122)S7 (95-106)S9 (127-135)S10 (141-151)TIV5 (122-125)TI2 (136-139)TII'4 (123-126)TIV6 (135-138)3H1 (192-195)S13 (184-185)TI3 (152-155)TVIII1 (215-218)TIV7 (217-220)TIV8 (228-232)S1 (33-37)TII'3 (66-69)TIV4 (107-110)AH1 (202-210)S5 (69-72)Updating...
connected with : NaN
molecule tags Structural genomics, unknown function
source organism Bacteroides vulgatus
publication title Crystal structure of a hypothetical protein BVU_2266 (BVU_2266) from Bacteroides vulgatus ATCC 8482 at 2.80 A resolution
rcsb
molecule keywords hypothetical protein BVU_2266
total genus 54
structure length 239
sequence length 245
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-09-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.150 Mainly Beta Beta Barrel Porin Porin 3tzgA00
3TZGA
chains in the Genus database with same CATH superfamily
3BS0A 2MNHA 4BUMX 4Z3TA 2F1VA 3NSGA 4K3BA 3SYBA 3SZVA 1MPFA 3FYXA 3PORA 2QTKA 1IZNA 3A2SX 3AA6A 4FZNA 3AA7A 5ADXL 3LK2A 4O3WA 1BT9A 4G76A 5D5DA 2XMXA 2ZFGA 3PQSA 2K4TA 4G75A 5PRNA 4GHBA 4D64A 4GCSA 4N59A 5KAFO 2KZ7A 4AZLA 3BRYA 4FMSA 2F1TA 3JTYA 4FUVA 5B5EO 4FSPA 2J4UP 3T20A 4O4XA 2R88A 3KVDD 2KXPB 2XE3A 3V8UA 5AFUK 3VZUX 2K0LA 1MM5A 3AA0A 4AFKA 7PRNA 3DA3A 1THQA 2R4OA 3VE1A 3SY7A 5KAIO 1MM4A 4O3ZA 2XE5A 3K19A 5E79O 5GTHO 2Y0LA 4N58A 1G90A 3A0HO 3DWOX 4JFBA 3VY9X 2M07A 3HOEA 5G39A 3AA1B 2AXTO 4O3XB 2N2MA 3PRNA 3SY9A 2R8AA 3C5OA 3LK3A 4IL6O 1Q9FA 3VY8X 3A0BO 2R4NA 4LSIA 1QJ8A 3RBHA 2FGRA 2WVPA 3SYSA 2KDYA 2XE2A 3WI5A 4GCQA 4B61A 1PRNA 2ERVA 2W80C 1ZHYA 2XE1A 3WU2O 4LSHA 4N74A 1YS5A 4K3CA 5AFUL 2JQYA 2LHFA 4C4VB 3UPGA 3EMNX 3KZIO 1ZHTA 1Q9GA 3DA4A 1GFPA 1H6S1 3AAEA 4FESA 2KC0A 4KR8A 4JCHA 4RJWA 5DL6A 5DL7A 3AAAB 4C00A 3PGRA 5DL8A 1QJPA 5TISO 3VE2A 3PGUA 1HXUA 3LK42 4UB6O 4AKRA 2YPVA 4FZLA 3HW9A 4FT6A 2WJQA 1T16A 4FSOA 4KRAA 3T24A 3TZGA 4D65A 1BH3A 1IZNB 4XNKA 5IYUA 3AA6B 5GV0A 2R4LA 5FVNA 3AA7B 3PF1A 4PUXA 3LK2B 4LSFA 2LFUA 3GP6A 1ZHWA 5G3AA 4AYEC 5JDPA 3DWNA 2YNKA 3WI4A 4GCPA 2KZ7B 2OMFA 5G26A 1BXWA 2X27X 4FQEA 4FOZA 1ORMA 4O49A 1QJ9A 5EE2A 2O4VA 2MHLA 4QQ1A 2ODJA 2W81C 8PRNA 5B66O 2FGQX 4F4BA 4AYNA 1GFNA 1GFOA 1P4TA 5T5FA 2JMMA 2Y2XA 3UU2A 4FZMA 3AA0B 3HOLA 2PRNA 1S5LO 4AYID 1HXXA 4C69X 5G38A 1ZHZA 4O3YA 3SZDA 5GTIO 3VZWX 3T0SA 2IWWA 2Y0KA 1GFQA 4FRTA 2Y0HA 3PQUA 1GFMA 2GE4A 3LK3B 2KXPA 3NJTA 3POXA 4FRXA 4RJXA 4RLCA 3DZMA 3JCUO 4GF4A 2R4PA 1ZHXA 2N2LA 2R89A 2IWVA 2Y7SA 4N75A 4AYMC 1OSMA 4RLBA 4AUIA 3HWBA 3LK41 4E1TA 4PJ0O 2X9KA 4CTDA 4LSEA 3AAEB 1PHOA 3POUA 3G7GA 1E54A 4KR4A 3VZTX 4AKMA 6PRNA 3AA1A 3BRZA 2J1NA 4RL9A 5H2FO 5ADXK 1HXTA 4AKRB 4XNLA 2WJRA 4E1SA 2XG6A 3PGSA 4UB8O 4PR7A 3UAQA 4O4UA 2ZLDA 3O0EA 3QRAA 2XTRA 2F1CX 4U9CA 2PORA 4D5UA 5DL5A 3QRCA 4C4VA 1OPFA 1T1LA 2M06A 4AYDC 2XTQA 3AAAA 3POQA
chains in the Genus database with same CATH topology
2MNHA 4BUMX 4Z3TA 2F1VA 3NSGA 3SYBA 3SZVA 1MPFA 3FYXA 3PORA 2QTKA 1IZNA 3A2SX 3AA6A 4FZNA 3AA7A 5ADXL 3LK2A 4O3WA 1BT9A 4G76A 5D5DA 2XMXA 2ZFGA 3PQSA 2K4TA 4G75A 5PRNA 4GHBA 4D64A 4GCSA 4N59A 2KZ7A 4AZLA 4FMSA 4FUVA 2F1TA 3JTYA 2J4UP 3T20A 4FSPA 4O4XA 3KVDD 2KXPB 2XE3A 3V8UA 5AFUK 3VZUX 2K0LA 1MM5A 3AA0A 4AFKA 7PRNA 3DA3A 1THQA 3VE1A 3SY7A 1MM4A 4O3ZA 2XE5A 3K19A 2Y0LA 4N58A 1G90A 4JFBA 3VY9X 2M07A 3HOEA 3AA1B 4O3XB 2N2MA 3PRNA 3SY9A 3C5OA 3LK3A 3VY8X 1Q9FA 4LSIA 1QJ8A 3RBHA 2FGRA 3SYSA 2KDYA 2XE2A 3WI5A 4GCQA 4B61A 1PRNA 2ERVA 2W80C 1ZHYA 2XE1A 4LSHA 1YS5A 5AFUL 2LHFA 3UPGA 3EMNX 1ZHTA 1Q9GA 3DA4A 1GFPA 1H6S1 3AAEA 4FESA 2KC0A 4KR8A 4JCHA 4RJWA 5DL6A 5DL7A 3AAAB 5DL8A 1QJPA 3VE2A 1HXUA 3LK42 4AKRA 2YPVA 4FZLA 3HW9A 4FT6A 4KRAA 4FSOA 3T24A 3TZGA 4D65A 1BH3A 1IZNB 4XNKA 5IYUA 3AA6B 5GV0A 5FVNA 3AA7B 4PUXA 3LK2B 4LSFA 2LFUA 3GP6A 1ZHWA 4AYEC 5JDPA 2YNKA 3WI4A 4GCPA 2KZ7B 2OMFA 5G26A 1BXWA 2X27X 4O49A 4FOZA 1ORMA 1QJ9A 5EE2A 2O4VA 2MHLA 4QQ1A 2ODJA 2W81C 8PRNA 2FGQX 4F4BA 4AYNA 1GFNA 1GFOA 1P4TA 5T5FA 2JMMA 2Y2XA 3UU2A 4FZMA 3AA0B 3HOLA 2PRNA 4AYID 4C69X 1HXXA 1ZHZA 4O3YA 3SZDA 3VZWX 3T0SA 2Y0KA 1GFQA 4FRTA 2Y0HA 3PQUA 1GFMA 2GE4A 3LK3B 2KXPA 4RLCA 3POXA 4FRXA 4RJXA 4GF4A 1ZHXA 2N2LA 2Y7SA 4AYMC 1OSMA 4RLBA 4AUIA 3HWBA 3LK41 4E1TA 4LSEA 3AAEB 1PHOA 3POUA 3G7GA 1E54A 4KR4A 3VZTX 4AKMA 6PRNA 3AA1A 2J1NA 4RL9A 5ADXK 1HXTA 4AKRB 4XNLA 4E1SA 2XG6A 3UAQA 4O4UA 2ZLDA 3O0EA 3QRAA 2XTRA 4U9CA 2PORA 4D5UA 5DL5A 3QRCA 1OPFA 2M06A 4AYDC 2XTQA 3AAAA 3POQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TZG A; 
#chains in the Genus database with same CATH topology
 3BS0 A;  2MNH A;  4BUM X;  4Z3T A;  2F1V A;  3NSG A;  4K3B A;  3SYB A;  3SZV A;  1MPF A;  3FYX A;  3POR A;  2QTK A;  1IZN A;  3A2S X;  3AA6 A;  4FZN A;  3AA7 A;  5ADX L;  3LK2 A;  4O3W A;  1BT9 A;  4G76 A;  5D5D A;  2XMX A;  2ZFG A;  3PQS A;  2K4T A;  4G75 A;  5PRN A;  4GHB A;  4D64 A;  4GCS A;  4N59 A;  5KAF O;  2KZ7 A;  4AZL A;  3BRY A;  4FMS A;  2F1T A;  3JTY A;  4FUV A;  5B5E O;  4FSP A;  2J4U P;  3T20 A;  4O4X A;  2R88 A;  3KVD D;  2KXP B;  2XE3 A;  3V8U A;  5AFU K;  3VZU X;  2K0L A;  1MM5 A;  3AA0 A;  4AFK A;  7PRN A;  3DA3 A;  1THQ A;  2R4O A;  3VE1 A;  3SY7 A;  5KAI O;  1MM4 A;  4O3Z A;  2XE5 A;  3K19 A;  5E79 O;  5GTH O;  2Y0L A;  4N58 A;  1G90 A;  3A0H O;  3DWO X;  4JFB A;  3VY9 X;  2M07 A;  3HOE A;  5G39 A;  3AA1 B;  2AXT O;  4O3X B;  2N2M A;  3PRN A;  3SY9 A;  2R8A A;  3C5O A;  3LK3 A;  4IL6 O;  1Q9F A;  3VY8 X;  3A0B O;  2R4N A;  4LSI A;  1QJ8 A;  3RBH A;  2FGR A;  2WVP A;  3SYS A;  2KDY A;  2XE2 A;  3WI5 A;  4GCQ A;  4B61 A;  1PRN A;  2ERV A;  2W80 C;  1ZHY A;  2XE1 A;  3WU2 O;  4LSH A;  4N74 A;  1YS5 A;  4K3C A;  5AFU L;  2JQY A;  2LHF A;  4C4V B;  3UPG A;  3EMN X;  3KZI O;  1ZHT A;  1Q9G A;  3DA4 A;  1GFP A;  1H6S 1;  3AAE A;  4FES A;  2KC0 A;  4KR8 A;  4JCH A;  4RJW A;  5DL6 A;  5DL7 A;  3AAA B;  4C00 A;  3PGR A;  5DL8 A;  1QJP A;  5TIS O;  3VE2 A;  3PGU A;  1HXU A;  3LK4 2;  4UB6 O;  4AKR A;  2YPV A;  4FZL A;  3HW9 A;  4FT6 A;  2WJQ A;  1T16 A;  4FSO A;  4KRA A;  3T24 A;  3TZG A;  4D65 A;  1BH3 A;  1IZN B;  4XNK A;  5IYU A;  3AA6 B;  5GV0 A;  2R4L A;  5FVN A;  3AA7 B;  3PF1 A;  4PUX A;  3LK2 B;  4LSF A;  2LFU A;  3GP6 A;  1ZHW A;  5G3A A;  4AYE C;  5JDP A;  3DWN A;  2YNK A;  3WI4 A;  4GCP A;  2KZ7 B;  2OMF A;  5G26 A;  1BXW A;  2X27 X;  4FQE A;  4FOZ A;  1ORM A;  4O49 A;  1QJ9 A;  5EE2 A;  2O4V A;  2MHL A;  4QQ1 A;  2ODJ A;  2W81 C;  8PRN A;  5B66 O;  2FGQ X;  4F4B A;  4AYN A;  1GFN A;  1GFO A;  1P4T A;  5T5F A;  2JMM A;  2Y2X A;  3UU2 A;  4FZM A;  3AA0 B;  3HOL A;  2PRN A;  1S5L O;  4AYI D;  1HXX A;  4C69 X;  5G38 A;  1ZHZ A;  4O3Y A;  3SZD A;  5GTI O;  3VZW X;  3T0S A;  2IWW A;  2Y0K A;  1GFQ A;  4FRT A;  2Y0H A;  3PQU A;  1GFM A;  2GE4 A;  3LK3 B;  2KXP A;  3NJT A;  3POX A;  4FRX A;  4RJX A;  4RLC A;  3DZM A;  3JCU O;  4GF4 A;  2R4P A;  1ZHX A;  2N2L A;  2R89 A;  2IWV A;  2Y7S A;  4N75 A;  4AYM C;  1OSM A;  4RLB A;  4AUI A;  3HWB A;  3LK4 1;  4E1T A;  4PJ0 O;  2X9K A;  4CTD A;  4LSE A;  3AAE B;  1PHO A;  3POU A;  3G7G A;  1E54 A;  4KR4 A;  3VZT X;  4AKM A;  6PRN A;  3AA1 A;  3BRZ A;  2J1N A;  4RL9 A;  5H2F O;  5ADX K;  1HXT A;  4AKR B;  4XNL A;  2WJR A;  4E1S A;  2XG6 A;  3PGS A;  4UB8 O;  4PR7 A;  3UAQ A;  4O4U A;  2ZLD A;  3O0E A;  3QRA A;  2XTR A;  2F1C X;  4U9C A;  2POR A;  4D5U A;  5DL5 A;  3QRC A;  4C4V A;  1OPF A;  1T1L A;  2M06 A;  4AYD C;  2XTQ A;  3AAA A;  3POQ A; 
#chains in the Genus database with same CATH homology
 2MNH A;  4BUM X;  4Z3T A;  2F1V A;  3NSG A;  3SYB A;  3SZV A;  1MPF A;  3FYX A;  3POR A;  2QTK A;  1IZN A;  3A2S X;  3AA6 A;  4FZN A;  3AA7 A;  5ADX L;  3LK2 A;  4O3W A;  1BT9 A;  4G76 A;  5D5D A;  2XMX A;  2ZFG A;  3PQS A;  2K4T A;  4G75 A;  5PRN A;  4GHB A;  4D64 A;  4GCS A;  4N59 A;  2KZ7 A;  4AZL A;  4FMS A;  4FUV A;  2F1T A;  3JTY A;  2J4U P;  3T20 A;  4FSP A;  4O4X A;  3KVD D;  2KXP B;  2XE3 A;  3V8U A;  5AFU K;  3VZU X;  2K0L A;  1MM5 A;  3AA0 A;  4AFK A;  7PRN A;  3DA3 A;  1THQ A;  3VE1 A;  3SY7 A;  1MM4 A;  4O3Z A;  2XE5 A;  3K19 A;  2Y0L A;  4N58 A;  1G90 A;  4JFB A;  3VY9 X;  2M07 A;  3HOE A;  3AA1 B;  4O3X B;  2N2M A;  3PRN A;  3SY9 A;  3C5O A;  3LK3 A;  3VY8 X;  1Q9F A;  4LSI A;  1QJ8 A;  3RBH A;  2FGR A;  3SYS A;  2KDY A;  2XE2 A;  3WI5 A;  4GCQ A;  4B61 A;  1PRN A;  2ERV A;  2W80 C;  1ZHY A;  2XE1 A;  4LSH A;  1YS5 A;  5AFU L;  2LHF A;  3UPG A;  3EMN X;  1ZHT A;  1Q9G A;  3DA4 A;  1GFP A;  1H6S 1;  3AAE A;  4FES A;  2KC0 A;  4KR8 A;  4JCH A;  4RJW A;  5DL6 A;  5DL7 A;  3AAA B;  5DL8 A;  1QJP A;  3VE2 A;  1HXU A;  3LK4 2;  4AKR A;  2YPV A;  4FZL A;  3HW9 A;  4FT6 A;  4KRA A;  4FSO A;  3T24 A;  3TZG A;  4D65 A;  1BH3 A;  1IZN B;  4XNK A;  5IYU A;  3AA6 B;  5GV0 A;  5FVN A;  3AA7 B;  4PUX A;  3LK2 B;  4LSF A;  2LFU A;  3GP6 A;  1ZHW A;  4AYE C;  5JDP A;  2YNK A;  3WI4 A;  4GCP A;  2KZ7 B;  2OMF A;  5G26 A;  1BXW A;  2X27 X;  4O49 A;  4FOZ A;  1ORM A;  1QJ9 A;  5EE2 A;  2O4V A;  2MHL A;  4QQ1 A;  2ODJ A;  2W81 C;  8PRN A;  2FGQ X;  4F4B A;  4AYN A;  1GFN A;  1GFO A;  1P4T A;  5T5F A;  2JMM A;  2Y2X A;  3UU2 A;  4FZM A;  3AA0 B;  3HOL A;  2PRN A;  4AYI D;  4C69 X;  1HXX A;  1ZHZ A;  4O3Y A;  3SZD A;  3VZW X;  3T0S A;  2Y0K A;  1GFQ A;  4FRT A;  2Y0H A;  3PQU A;  1GFM A;  2GE4 A;  3LK3 B;  2KXP A;  4RLC A;  3POX A;  4FRX A;  4RJX A;  4GF4 A;  1ZHX A;  2N2L A;  2Y7S A;  4AYM C;  1OSM A;  4RLB A;  4AUI A;  3HWB A;  3LK4 1;  4E1T A;  4LSE A;  3AAE B;  1PHO A;  3POU A;  3G7G A;  1E54 A;  4KR4 A;  3VZT X;  4AKM A;  6PRN A;  3AA1 A;  2J1N A;  4RL9 A;  5ADX K;  1HXT A;  4AKR B;  4XNL A;  4E1S A;  2XG6 A;  3UAQ A;  4O4U A;  2ZLD A;  3O0E A;  3QRA A;  2XTR A;  4U9C A;  2POR A;  4D5U A;  5DL5 A;  3QRC A;  1OPF A;  2M06 A;  4AYD C;  2XTQ A;  3AAA A;  3POQ A; 
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