3UU2 | Genus

Total Genus 65

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	65
sequence length	357
structure length	298
Chain Sequence	AEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIGFKGETQVNDQLTGYGQWEYQIQGNQTEGSNDSWTRVAFAGLKFADAGSFDYGRNYGVTYDVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGLVDGLDFALQYQGKGDGYGGSLTYAIGEGFSVGGAITTSKATVYTGGLKYDANNIYLAAQYSQTYAQNFEVVAQYQFDFGLRPSVAYLQSKGKDISNGYGASYGDQDIVKYVDVGATYYFNKNMSTYVDYKINLLDKNDFTRDAGINTDDIVALGLVYQF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 298 atoms

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298 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Membrane protein
source organism	Salmonella enterica subsp. enterica serovar typhimurium
publication title	Crystal Structure of Outer membrane protein OmpC from Salmonella typhi. rcsb
molecule keywords	Outer membrane protein C
total genus	65
structure length	298
sequence length	357
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2011-11-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00267	Porin_1	Gram-negative porin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	3uu2A00

4FRTA 5FVNA 1HXTA 2Y0KA 3SZVA 4GCSA 3T24A 3VY8X 5DL6A 3FYXA 4LSIA 3SZDA 2J4UP 4D65A 5DL5A 1GFOA 2QTKA 8PRNA 3A2SX 5DL7A 3POQA 6PRNA 7PRNA 3T20A 3NSGA 4LSEA 2ZFGA 5JDPA 4KRAA 2ODJA 1GFQA 3SYSA 3UPGA 2FGRA 1MPFA 1OSMA 3SYBA 2XE1A 4RJXA 4GCQA 2XE5A 4KR8A 3O0EA 1GFMA 2O4VA 3T0SA 4LSHA 4D5UA 1GFNA 4JFBA 2J1NA 4D64A 1H6S1 1BH3A 3EMNX 4FMSA 4C69X 3VZWX 3SY9A 4FSPA 4FSOA 1PRNA 1BT9A 3WI5A 5PRNA 3WI4A 4FT6A 3SY7A 3HWBA 1HXUA 2OMFA 2PORA 1E54A 1GFPA 3PRNA 4FOZA 4FRXA 2PRNA 2Y0HA 4BUMX 4LSFA 3JTYA 2XE2A 4GCPA 4KR4A 1HXXA 2XE3A 3POUA 2Y2XA 1PHOA 4AUIA 3K19A 3POXA 3PORA 2K4TA 5DL8A 3HW9A 3UU2A 2FGQX 3VZTX 4RJWA 1OPFA 2ZLDA 2Y0LA 3VY9X 3VZUX 2XG6A
chains in the Genus database with same CATH superfamily

1BXWA 2KZ7B 3DWNA 4FRTA 1HXTA 5FVNA 2Y0KA 2ERVA 2N2MA 3BRZA 1G90A 3SZVA 4GCSA 3T24A 1ZHTA 2MNHA 3AAEA 4K3BA 3AA6B 5DL6A 2KXPA 3VY8X 5AFUL 5B5EO 3LK3A 1Q9FA 2KDYA 3LK42 3PGSA 2KC0A 4E1SA 4E1TA 5H2FO 4AYID 1T16A 3FYXA 3KVDD 4Z3TA 1QJ9A 4LSIA 4N74A 3SZDA 5B66O 3LK2A 2LFUA 2J4UP 1QJ8A 4RLBA 4D65A 5DL5A 3NJTA 1GFOA 2R88A 5KAFO 3PQSA 2R4LA 3HOLA 4JCHA 4O49A 2QTKA 8PRNA 4FZMA 3A2SX 2AXTO 4G75A 3RBHA 5DL7A 3POQA 6PRNA 7PRNA 2N2LA 3NSGA 3T20A 3VE1A 4LSEA 3UAQA 2ZFGA 2XTQA 3PGRA 4FZLA 5ADXK 5JDPA 2R8AA 4N59A 3C5OA 1IZNA 2X27X 4KRAA 2ODJA 1GFQA 3A0BO 3AAAA 2FGRA 3PQUA 1MPFA 2IWVA 1OSMA 2K0LA 2YPVA 5G39A 2XE1A 3SYBA 4RJXA 2W80C 3V8UA 4GCQA 4O3WA 4C4VA 1ZHYA 2XE5A 3A0HO 5D5DA 1ORMA 4UB8O 3HOEA 2XTRA 4KR8A 5T5FA 3LK41 3UPGA 4K3CA 4FESA 3O0EA 2IWWA 4RLCA 1GFMA 2O4VA 3AA0A 4G76A 1P4TA 2KXPB 3QRCA 4PJ0O 3VE2A 3LK3B 3T0SA 4LSHA 4O4UA 5TISO 1THQA 1GFNA 4D5UA 1MM4A 2XMXA 4JFBA 2J1NA 4XNKA 4D64A 1H6S1 1BH3A 3AA1A 3EMNX 2M06A 4AZLA 4FMSA 3LK2B 5IYUA 3BRYA 1S5LO 2WVPA 4C69X 3VZWX 3SY9A 4FSPA 4FSOA 1Q9GA 1PRNA 4UB6O 4QQ1A 1BT9A 4O3YA 4CTDA 3WI5A 4AKRB 1ZHZA 5PRNA 3WI4A 2X9KA 4FT6A 2Y7SA 3GP6A 3SY7A 3HWBA 4U9CA 1HXUA 2OMFA 5ADXL 2PORA 3DZMA 4N75A 1E54A 3KZIO 1GFPA 4PR7A 3AA7B 2R4NA 1ZHWA 2MHLA 3PRNA 4FOZA 4FZNA 4AYMC 3DWOX 1IZNB 4IL6O 4FRXA 2F1VA 2PRNA 3AAEB 2Y0HA 3G7GA 4LSFA 2KZ7A 3BS0A 3DA3A 4N58A 5G26A 4BUMX 4C4VB 4B61A 4F4BA 3JTYA 2WJRA 5G3AA 2XE2A 4GCPA 4KR4A 4FUVA 3AA6A 4AFKA 3SYSA 4AKMA 5AFUK 2JMMA 2F1CX 3AA0B 1HXXA 3PF1A 2XE3A 3POUA 4AYNA 2M07A 4GF4A 2Y2XA 1PHOA 2JQYA 5G38A 3K19A 4AUIA 3WU2O 2LHFA 3AA1B 5EE2A 3POXA 4RL9A 5GTHO 3PORA 2K4TA 1YS5A 2R4OA 4O4XA 5DL8A 5GTIO 4AYDC 2W81C 1QJPA 2YNKA 3HW9A 1ZHXA 4FQEA 4XNLA 3TZGA 2FGQX 3UU2A 1MM5A 3JCUO 4O3XB 4AYEC 5KAIO 3AAAB 1T1LA 2GE4A 2R4PA 3VZTX 3PGUA 4GHBA 4RJWA 1OPFA 2ZLDA 3DA4A 3QRAA 2Y0LA 4AKRA 3VY9X 3VZUX 2R89A 2WJQA 4PUXA 5E79O 2XG6A 2F1TA 5GV0A 4O3ZA 4C00A 3AA7A
chains in the Genus database with same CATH topology

1BXWA 2KZ7B 4FRTA 5FVNA 1HXTA 1G90A 2Y0KA 2ERVA 2N2MA 3SZVA 4GCSA 3T24A 1ZHTA 2MNHA 3AAEA 5DL6A 3AA6B 3VY8X 2KXPA 5AFUL 3LK3A 1Q9FA 2KDYA 3LK42 4E1SA 2KC0A 4E1TA 4AYID 3FYXA 3KVDD 4Z3TA 1QJ9A 4LSIA 3SZDA 3LK2A 2LFUA 2J4UP 1QJ8A 4RLBA 4D65A 5DL5A 1GFOA 3PQSA 3HOLA 4JCHA 4O49A 2QTKA 8PRNA 4FZMA 3A2SX 4G75A 3RBHA 5DL7A 3POQA 6PRNA 7PRNA 2N2LA 3NSGA 3T20A 3VE1A 4LSEA 3UAQA 2ZFGA 2XTQA 4FZLA 5ADXK 5JDPA 4N59A 3C5OA 1IZNA 2X27X 4KRAA 2ODJA 1GFQA 3AAAA 3SYSA 2FGRA 3PQUA 1MPFA 2YPVA 1OSMA 2K0LA 4AKRB 3SYBA 2XE1A 4RJXA 2W80C 3V8UA 4GCQA 4O3WA 1ZHYA 2XE5A 5D5DA 1ORMA 3HOEA 2XTRA 4KR8A 5T5FA 3LK41 3UPGA 4FESA 3O0EA 4RLCA 1GFMA 2O4VA 3AA0A 4G76A 1P4TA 2KXPB 3QRCA 3VE2A 3LK3B 3T0SA 4LSHA 4O4UA 4D5UA 1THQA 1GFNA 1MM4A 2XMXA 4JFBA 2J1NA 4XNKA 4D64A 1H6S1 1BH3A 3AA1A 3EMNX 2M06A 4AZLA 4FMSA 3LK2B 5IYUA 4C69X 3VZWX 3SY9A 4FSPA 4FSOA 1Q9GA 1PRNA 4QQ1A 1BT9A 4O3YA 3WI5A 1ZHZA 5PRNA 3WI4A 4FT6A 2Y7SA 3GP6A 3SY7A 3HWBA 4U9CA 1HXUA 2OMFA 5ADXL 2PORA 1E54A 1GFPA 3AA7B 1ZHWA 2MHLA 3PRNA 4FOZA 4FZNA 4AYMC 1IZNB 4FRXA 2F1VA 2PRNA 3AAEB 2Y0HA 3G7GA 4LSFA 2KZ7A 3DA3A 4N58A 5G26A 4BUMX 4F4BA 4B61A 3JTYA 2XE2A 4GCPA 4KR4A 4FUVA 3AA6A 4AFKA 4AKMA 5AFUK 2JMMA 3AA0B 1HXXA 2XE3A 3POUA 4AYNA 2M07A 4GF4A 2Y2XA 1PHOA 4AUIA 3K19A 2LHFA 3AA1B 5EE2A 3POXA 4RL9A 3PORA 2K4TA 1YS5A 4O4XA 5DL8A 4AYDC 2W81C 1QJPA 2YNKA 3HW9A 1ZHXA 4XNLA 3TZGA 3UU2A 2FGQX 1MM5A 4O3XB 4AYEC 3AAAB 2GE4A 3VZTX 4GHBA 4RJWA 1OPFA 2ZLDA 3DA4A 3QRAA 2Y0LA 4AKRA 3VY9X 3VZUX 4PUXA 5GV0A 2XG6A 2F1TA 4O3ZA 3AA7A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4FRT A;  5FVN A;  1HXT A;  2Y0K A;  3SZV A;  4GCS A;  3T24 A;  3VY8 X;  5DL6 A;  3FYX A;  4LSI A;  3SZD A;  2J4U P;  4D65 A;  5DL5 A;  1GFO A;  2QTK A;  8PRN A;  3A2S X;  5DL7 A;  3POQ A;  6PRN A;  7PRN A;  3T20 A;  3NSG A;  4LSE A;  2ZFG A;  5JDP A;  4KRA A;  2ODJ A;  1GFQ A;  3SYS A;  3UPG A;  2FGR A;  1MPF A;  1OSM A;  3SYB A;  2XE1 A;  4RJX A;  4GCQ A;  2XE5 A;  4KR8 A;  3O0E A;  1GFM A;  2O4V A;  3T0S A;  4LSH A;  4D5U A;  1GFN A;  4JFB A;  2J1N A;  4D64 A;  1H6S 1;  1BH3 A;  3EMN X;  4FMS A;  4C69 X;  3VZW X;  3SY9 A;  4FSP A;  4FSO A;  1PRN A;  1BT9 A;  3WI5 A;  5PRN A;  3WI4 A;  4FT6 A;  3SY7 A;  3HWB A;  1HXU A;  2OMF A;  2POR A;  1E54 A;  1GFP A;  3PRN A;  4FOZ A;  4FRX A;  2PRN A;  2Y0H A;  4BUM X;  4LSF A;  3JTY A;  2XE2 A;  4GCP A;  4KR4 A;  1HXX A;  2XE3 A;  3POU A;  2Y2X A;  1PHO A;  4AUI A;  3K19 A;  3POX A;  3POR A;  2K4T A;  5DL8 A;  3HW9 A;  3UU2 A;  2FGQ X;  3VZT X;  4RJW A;  1OPF A;  2ZLD A;  2Y0L A;  3VY9 X;  3VZU X;  2XG6 A; 
#chains in the Genus database with same CATH topology
 1BXW A;  2KZ7 B;  3DWN A;  4FRT A;  1HXT A;  5FVN A;  2Y0K A;  2ERV A;  2N2M A;  3BRZ A;  1G90 A;  3SZV A;  4GCS A;  3T24 A;  1ZHT A;  2MNH A;  3AAE A;  4K3B A;  3AA6 B;  5DL6 A;  2KXP A;  3VY8 X;  5AFU L;  5B5E O;  3LK3 A;  1Q9F A;  2KDY A;  3LK4 2;  3PGS A;  2KC0 A;  4E1S A;  4E1T A;  5H2F O;  4AYI D;  1T16 A;  3FYX A;  3KVD D;  4Z3T A;  1QJ9 A;  4LSI A;  4N74 A;  3SZD A;  5B66 O;  3LK2 A;  2LFU A;  2J4U P;  1QJ8 A;  4RLB A;  4D65 A;  5DL5 A;  3NJT A;  1GFO A;  2R88 A;  5KAF O;  3PQS A;  2R4L A;  3HOL A;  4JCH A;  4O49 A;  2QTK A;  8PRN A;  4FZM A;  3A2S X;  2AXT O;  4G75 A;  3RBH A;  5DL7 A;  3POQ A;  6PRN A;  7PRN A;  2N2L A;  3NSG A;  3T20 A;  3VE1 A;  4LSE A;  3UAQ A;  2ZFG A;  2XTQ A;  3PGR A;  4FZL A;  5ADX K;  5JDP A;  2R8A A;  4N59 A;  3C5O A;  1IZN A;  2X27 X;  4KRA A;  2ODJ A;  1GFQ A;  3A0B O;  3AAA A;  2FGR A;  3PQU A;  1MPF A;  2IWV A;  1OSM A;  2K0L A;  2YPV A;  5G39 A;  2XE1 A;  3SYB A;  4RJX A;  2W80 C;  3V8U A;  4GCQ A;  4O3W A;  4C4V A;  1ZHY A;  2XE5 A;  3A0H O;  5D5D A;  1ORM A;  4UB8 O;  3HOE A;  2XTR A;  4KR8 A;  5T5F A;  3LK4 1;  3UPG A;  4K3C A;  4FES A;  3O0E A;  2IWW A;  4RLC A;  1GFM A;  2O4V A;  3AA0 A;  4G76 A;  1P4T A;  2KXP B;  3QRC A;  4PJ0 O;  3VE2 A;  3LK3 B;  3T0S A;  4LSH A;  4O4U A;  5TIS O;  1THQ A;  1GFN A;  4D5U A;  1MM4 A;  2XMX A;  4JFB A;  2J1N A;  4XNK A;  4D64 A;  1H6S 1;  1BH3 A;  3AA1 A;  3EMN X;  2M06 A;  4AZL A;  4FMS A;  3LK2 B;  5IYU A;  3BRY A;  1S5L O;  2WVP A;  4C69 X;  3VZW X;  3SY9 A;  4FSP A;  4FSO A;  1Q9G A;  1PRN A;  4UB6 O;  4QQ1 A;  1BT9 A;  4O3Y A;  4CTD A;  3WI5 A;  4AKR B;  1ZHZ A;  5PRN A;  3WI4 A;  2X9K A;  4FT6 A;  2Y7S A;  3GP6 A;  3SY7 A;  3HWB A;  4U9C A;  1HXU A;  2OMF A;  5ADX L;  2POR A;  3DZM A;  4N75 A;  1E54 A;  3KZI O;  1GFP A;  4PR7 A;  3AA7 B;  2R4N A;  1ZHW A;  2MHL A;  3PRN A;  4FOZ A;  4FZN A;  4AYM C;  3DWO X;  1IZN B;  4IL6 O;  4FRX A;  2F1V A;  2PRN A;  3AAE B;  2Y0H A;  3G7G A;  4LSF A;  2KZ7 A;  3BS0 A;  3DA3 A;  4N58 A;  5G26 A;  4BUM X;  4C4V B;  4B61 A;  4F4B A;  3JTY A;  2WJR A;  5G3A A;  2XE2 A;  4GCP A;  4KR4 A;  4FUV A;  3AA6 A;  4AFK A;  3SYS A;  4AKM A;  5AFU K;  2JMM A;  2F1C X;  3AA0 B;  1HXX A;  3PF1 A;  2XE3 A;  3POU A;  4AYN A;  2M07 A;  4GF4 A;  2Y2X A;  1PHO A;  2JQY A;  5G38 A;  3K19 A;  4AUI A;  3WU2 O;  2LHF A;  3AA1 B;  5EE2 A;  3POX A;  4RL9 A;  5GTH O;  3POR A;  2K4T A;  1YS5 A;  2R4O A;  4O4X A;  5DL8 A;  5GTI O;  4AYD C;  2W81 C;  1QJP A;  2YNK A;  3HW9 A;  1ZHX A;  4FQE A;  4XNL A;  3TZG A;  2FGQ X;  3UU2 A;  1MM5 A;  3JCU O;  4O3X B;  4AYE C;  5KAI O;  3AAA B;  1T1L A;  2GE4 A;  2R4P A;  3VZT X;  3PGU A;  4GHB A;  4RJW A;  1OPF A;  2ZLD A;  3DA4 A;  3QRA A;  2Y0L A;  4AKR A;  3VY9 X;  3VZU X;  2R89 A;  2WJQ A;  4PUX A;  5E79 O;  2XG6 A;  2F1T A;  5GV0 A;  4O3Z A;  4C00 A;  3AA7 A; 
#chains in the Genus database with same CATH homology
 1BXW A;  2KZ7 B;  4FRT A;  5FVN A;  1HXT A;  1G90 A;  2Y0K A;  2ERV A;  2N2M A;  3SZV A;  4GCS A;  3T24 A;  1ZHT A;  2MNH A;  3AAE A;  5DL6 A;  3AA6 B;  3VY8 X;  2KXP A;  5AFU L;  3LK3 A;  1Q9F A;  2KDY A;  3LK4 2;  4E1S A;  2KC0 A;  4E1T A;  4AYI D;  3FYX A;  3KVD D;  4Z3T A;  1QJ9 A;  4LSI A;  3SZD A;  3LK2 A;  2LFU A;  2J4U P;  1QJ8 A;  4RLB A;  4D65 A;  5DL5 A;  1GFO A;  3PQS A;  3HOL A;  4JCH A;  4O49 A;  2QTK A;  8PRN A;  4FZM A;  3A2S X;  4G75 A;  3RBH A;  5DL7 A;  3POQ A;  6PRN A;  7PRN A;  2N2L A;  3NSG A;  3T20 A;  3VE1 A;  4LSE A;  3UAQ A;  2ZFG A;  2XTQ A;  4FZL A;  5ADX K;  5JDP A;  4N59 A;  3C5O A;  1IZN A;  2X27 X;  4KRA A;  2ODJ A;  1GFQ A;  3AAA A;  3SYS A;  2FGR A;  3PQU A;  1MPF A;  2YPV A;  1OSM A;  2K0L A;  4AKR B;  3SYB A;  2XE1 A;  4RJX A;  2W80 C;  3V8U A;  4GCQ A;  4O3W A;  1ZHY A;  2XE5 A;  5D5D A;  1ORM A;  3HOE A;  2XTR A;  4KR8 A;  5T5F A;  3LK4 1;  3UPG A;  4FES A;  3O0E A;  4RLC A;  1GFM A;  2O4V A;  3AA0 A;  4G76 A;  1P4T A;  2KXP B;  3QRC A;  3VE2 A;  3LK3 B;  3T0S A;  4LSH A;  4O4U A;  4D5U A;  1THQ A;  1GFN A;  1MM4 A;  2XMX A;  4JFB A;  2J1N A;  4XNK A;  4D64 A;  1H6S 1;  1BH3 A;  3AA1 A;  3EMN X;  2M06 A;  4AZL A;  4FMS A;  3LK2 B;  5IYU A;  4C69 X;  3VZW X;  3SY9 A;  4FSP A;  4FSO A;  1Q9G A;  1PRN A;  4QQ1 A;  1BT9 A;  4O3Y A;  3WI5 A;  1ZHZ A;  5PRN A;  3WI4 A;  4FT6 A;  2Y7S A;  3GP6 A;  3SY7 A;  3HWB A;  4U9C A;  1HXU A;  2OMF A;  5ADX L;  2POR A;  1E54 A;  1GFP A;  3AA7 B;  1ZHW A;  2MHL A;  3PRN A;  4FOZ A;  4FZN A;  4AYM C;  1IZN B;  4FRX A;  2F1V A;  2PRN A;  3AAE B;  2Y0H A;  3G7G A;  4LSF A;  2KZ7 A;  3DA3 A;  4N58 A;  5G26 A;  4BUM X;  4F4B A;  4B61 A;  3JTY A;  2XE2 A;  4GCP A;  4KR4 A;  4FUV A;  3AA6 A;  4AFK A;  4AKM A;  5AFU K;  2JMM A;  3AA0 B;  1HXX A;  2XE3 A;  3POU A;  4AYN A;  2M07 A;  4GF4 A;  2Y2X A;  1PHO A;  4AUI A;  3K19 A;  2LHF A;  3AA1 B;  5EE2 A;  3POX A;  4RL9 A;  3POR A;  2K4T A;  1YS5 A;  4O4X A;  5DL8 A;  4AYD C;  2W81 C;  1QJP A;  2YNK A;  3HW9 A;  1ZHX A;  4XNL A;  3TZG A;  3UU2 A;  2FGQ X;  1MM5 A;  4O3X B;  4AYE C;  3AAA B;  2GE4 A;  3VZT X;  4GHB A;  4RJW A;  1OPF A;  2ZLD A;  3DA4 A;  3QRA A;  2Y0L A;  4AKR A;  3VY9 X;  3VZU X;  4PUX A;  5GV0 A;  2XG6 A;  2F1T A;  4O3Z A;  3AA7 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3UU2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations