3VZT | Genus

Total Genus 85

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	85
sequence length	341
structure length	341
Chain Sequence	QVTLYGTIKAGVEVSRVKDAGTYKAQGGKSKTATQIADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 341 atoms

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341 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Membrane protein
source organism	Neisseria meningitidis
publication title	Structural basis for solute transport, nucleotide regulation, and immunological recognition of Neisseria meningitidis PorB. pubmed doi rcsb
molecule keywords	outer membrane protein
total genus	85
structure length	341
sequence length	341
ec nomenclature
pdb deposition date	2012-10-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
X	PF00267	Porin_1	Gram-negative porin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	3vztX00

3SZDA 3POQA 4FSPA 4RJWA 1GFNA 4KR4A 3T0SA 3T20A 4FSOA 3SYBA 4LSIA 1GFMA 4LSHA 1GFQA 3JTYA 4FT6A 2Y0LA 3VY9X 2XE5A 2ZLDA 1OPFA 4JFBA 4KR8A 6PRNA 3EMNX 3A2SX 1PHOA 2XE1A 3SY9A 4D64A 2ODJA 2PORA 3O0EA 3SYSA 2Y0KA 1PRNA 3FYXA 2XE3A 1BT9A 4FRTA 4FRXA 3PORA 4LSEA 3POUA 5DL7A 3UU2A 2XE2A 4GCQA 1OSMA 3WI4A 2OMFA 3PRNA 7PRNA 3HWBA 3VZTX 4D65A 3K19A 3VZUX 3HW9A 4FOZA 5JDPA 4GCSA 3VY8X 3VZWX 3SY7A 4C69X 5DL8A 3WI5A 1H6S1 1GFOA 5DL5A 4FMSA 2FGQX 3T24A 1HXXA 4LSFA 8PRNA 2Y0HA 5FVNA 5PRNA 3UPGA 2PRNA 3SZVA 2XG6A 1GFPA 1HXUA 2K4TA 2FGRA 2Y2XA 2QTKA 1HXTA 5DL6A 1E54A 3NSGA 4GCPA 2O4VA 2ZFGA 4RJXA 4D5UA 4KRAA 2J4UP 1MPFA 4BUMX 4AUIA 1BH3A 2J1NA 3POXA
chains in the Genus database with same CATH superfamily

3PGSA 2KXPA 3KVDD 3LK3A 3POQA 4FSPA 3SZDA 1ORMA 4RJWA 5H2FO 4O3YA 3TZGA 1GFNA 4KR4A 1G90A 3T0SA 5EE2A 4O3WA 3T20A 1YS5A 4G75A 4UB6O 4FSOA 3SYBA 4AYDC 3BRYA 4AYNA 3AA1A 5IYUA 4LSIA 4Z3TA 1GFMA 4RLCA 4LSHA 1GFQA 1QJPA 2F1CX 3JTYA 4PR7A 4FT6A 2KDYA 4O3XB 1ZHTA 4O3ZA 4CTDA 3AAEB 3NJTA 2Y0LA 3AAAA 3VY9X 5GTHO 2XE5A 2ZLDA 5ADXL 1OPFA 5E79O 4JFBA 4KR8A 4AYMC 3AA0A 4AKRB 2IWVA 6PRNA 2M07A 5ADXK 3G7GA 1ZHZA 1PHOA 3A2SX 3EMNX 4FZMA 4QQ1A 1T1LA 4N75A 5B5EO 4AKMA 4AFKA 1T16A 3LK41 5G38A 2XE1A 3SY9A 4D64A 3AA6B 4GF4A 4AYID 2ODJA 2Y7SA 3DWOX 3LK2B 1ZHYA 2PORA 2X9KA 3AA7B 1QJ9A 3O0EA 4FZLA 5G39A 1Q9GA 3SYSA 1Q9FA 2Y0KA 4N58A 4AYEC 1PRNA 3FYXA 2XE3A 4O49A 4O4UA 3PF1A 1BT9A 4FRTA 4FRXA 2W81C 3PQUA 3PORA 4RLBA 2R4PA 4LSEA 2KZ7B 3POUA 2XMXA 5DL7A 5B66O 5KAFO 2WVPA 2XE2A 3HOEA 3PQSA 3QRCA 4FZNA 4U9CA 3RBHA 3UU2A 4C4VA 2GE4A 1OSMA 4GCQA 2K0LA 3WI4A 2WJQA 2OMFA 2KXPB 3BRZA 3DA3A 3LK3B 3PRNA 2N2LA 1IZNB 3HWBA 4PJ0O 7PRNA 2LFUA 3VE1A 3VZTX 2MNHA 1P4TA 4D65A 3K19A 3VZUX 4O4XA 3HW9A 4FOZA 5JDPA 1THQA 4GCSA 3VY8X 2R4OA 4RL9A 3VZWX 2WJRA 3AA1B 5D5DA 1BXWA 3JCUO 5AFUK 1MM5A 2N2MA 2XTRA 4XNKA 3DA4A 3SY7A 4C69X 2JMMA 2XTQA 5DL8A 2LHFA 3WI5A 4XNLA 1H6S1 5GV0A 2R88A 2ERVA 5T5FA 5GTIO 4E1SA 3AAEA 2M06A 4PUXA 1GFOA 3DWNA 4FMSA 5DL5A 2FGQX 3T24A 4F4BA 1HXXA 2KC0A 4LSFA 5G26A 8PRNA 4FUVA 2Y0HA 4UB8O 4AKRA 5FVNA 3V8UA 3PGUA 3QRAA 2IWWA 2F1TA 5KAIO 5PRNA 4N59A 3A0HO 1IZNA 3UPGA 2PRNA 3SZVA 2XG6A 3BS0A 4FESA 1GFPA 3GP6A 3HOLA 4G76A 3UAQA 4C00A 1HXUA 2K4TA 2FGRA 4E1TA 3AA6A 4JCHA 1ZHWA 1MM4A 1S5LO 2Y2XA 3C5OA 2QTKA 3LK2A 4K3CA 3VE2A 4K3BA 1HXTA 5DL6A 1E54A 3NSGA 3AA7A 2X27X 4GCPA 4B61A 4N74A 2O4VA 5AFUL 2ZFGA 4GHBA 3DZMA 3LK42 2R4LA 4RJXA 5TISO 2YPVA 4D5UA 2W80C 2F1VA 4KRAA 2J4UP 1ZHXA 1MPFA 2R89A 2JQYA 3AAAB 4BUMX 5G3AA 1QJ8A 1BH3A 2AXTO 2KZ7A 2MHLA 4AUIA 3A0BO 4IL6O 2J1NA 4C4VB 3PGRA 2R8AA 3KZIO 2R4NA 4FQEA 3AA0B 2YNKA 3WU2O 4AZLA 3POXA
chains in the Genus database with same CATH topology

2KXPA 3KVDD 3LK3A 3POQA 4FSPA 3SZDA 1ORMA 4RJWA 4O3YA 3TZGA 1GFNA 4KR4A 1G90A 3T0SA 5EE2A 4O3WA 3T20A 1YS5A 4G75A 4FSOA 3SYBA 4AYDC 4AYNA 3AA1A 5IYUA 4LSIA 4Z3TA 1GFMA 4RLCA 4LSHA 1GFQA 1QJPA 3JTYA 4FT6A 2KDYA 4O3XB 1ZHTA 4O3ZA 3AAEB 2Y0LA 3AAAA 3VY9X 2XE5A 2ZLDA 5ADXL 1OPFA 4JFBA 4KR8A 4AYMC 3AA0A 4AKRB 6PRNA 2M07A 5ADXK 3G7GA 1ZHZA 1PHOA 3A2SX 3EMNX 4FZMA 4QQ1A 4AKMA 4AFKA 3LK41 2XE1A 3SY9A 4D64A 3AA6B 4GF4A 4AYID 2ODJA 2Y7SA 3LK2B 1ZHYA 2PORA 3AA7B 1QJ9A 3O0EA 4FZLA 1Q9GA 3SYSA 1Q9FA 2Y0KA 4N58A 4AYEC 1PRNA 3FYXA 2XE3A 4O49A 4O4UA 1BT9A 4FRTA 4FRXA 2W81C 3PQUA 3PORA 4RLBA 4LSEA 2KZ7B 3POUA 2XMXA 5DL7A 3UU2A 2XE2A 3HOEA 3PQSA 3QRCA 4FZNA 4U9CA 3RBHA 2GE4A 1OSMA 4GCQA 2K0LA 3WI4A 2OMFA 2KXPB 3DA3A 3LK3B 3PRNA 7PRNA 2N2LA 1IZNB 3HWBA 2LFUA 3VE1A 3VZTX 2MNHA 1P4TA 4D65A 3K19A 3VZUX 4O4XA 3HW9A 4FOZA 5JDPA 1THQA 4GCSA 3VY8X 4RL9A 3VZWX 3AA1B 5D5DA 1BXWA 5AFUK 1MM5A 2N2MA 2XTRA 4XNKA 3DA4A 3SY7A 4C69X 2JMMA 2XTQA 5DL8A 2LHFA 3WI5A 4XNLA 1H6S1 5GV0A 2ERVA 5T5FA 4E1SA 3AAEA 2M06A 4PUXA 1GFOA 5DL5A 4FMSA 2FGQX 3T24A 4F4BA 1HXXA 2KC0A 4LSFA 5G26A 8PRNA 4FUVA 2Y0HA 4AKRA 5FVNA 3V8UA 3QRAA 2F1TA 5PRNA 4N59A 3UPGA 1IZNA 2PRNA 3SZVA 2XG6A 4FESA 1GFPA 3GP6A 3HOLA 4G76A 3UAQA 1HXUA 2K4TA 2FGRA 4E1TA 3AA6A 4JCHA 1ZHWA 1MM4A 2Y2XA 3C5OA 3LK2A 2QTKA 3VE2A 1HXTA 5DL6A 1E54A 3NSGA 3AA7A 2X27X 4GCPA 4B61A 5AFUL 2O4VA 2ZFGA 4GHBA 3LK42 4RJXA 2YPVA 4D5UA 2W80C 2F1VA 4KRAA 2J4UP 1ZHXA 1MPFA 3AAAB 4BUMX 4AUIA 1QJ8A 1BH3A 2KZ7A 2MHLA 2J1NA 3AA0B 2YNKA 4AZLA 3POXA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3SZD A;  3POQ A;  4FSP A;  4RJW A;  1GFN A;  4KR4 A;  3T0S A;  3T20 A;  4FSO A;  3SYB A;  4LSI A;  1GFM A;  4LSH A;  1GFQ A;  3JTY A;  4FT6 A;  2Y0L A;  3VY9 X;  2XE5 A;  2ZLD A;  1OPF A;  4JFB A;  4KR8 A;  6PRN A;  3EMN X;  3A2S X;  1PHO A;  2XE1 A;  3SY9 A;  4D64 A;  2ODJ A;  2POR A;  3O0E A;  3SYS A;  2Y0K A;  1PRN A;  3FYX A;  2XE3 A;  1BT9 A;  4FRT A;  4FRX A;  3POR A;  4LSE A;  3POU A;  5DL7 A;  3UU2 A;  2XE2 A;  4GCQ A;  1OSM A;  3WI4 A;  2OMF A;  3PRN A;  7PRN A;  3HWB A;  3VZT X;  4D65 A;  3K19 A;  3VZU X;  3HW9 A;  4FOZ A;  5JDP A;  4GCS A;  3VY8 X;  3VZW X;  3SY7 A;  4C69 X;  5DL8 A;  3WI5 A;  1H6S 1;  1GFO A;  5DL5 A;  4FMS A;  2FGQ X;  3T24 A;  1HXX A;  4LSF A;  8PRN A;  2Y0H A;  5FVN A;  5PRN A;  3UPG A;  2PRN A;  3SZV A;  2XG6 A;  1GFP A;  1HXU A;  2K4T A;  2FGR A;  2Y2X A;  2QTK A;  1HXT A;  5DL6 A;  1E54 A;  3NSG A;  4GCP A;  2O4V A;  2ZFG A;  4RJX A;  4D5U A;  4KRA A;  2J4U P;  1MPF A;  4BUM X;  4AUI A;  1BH3 A;  2J1N A;  3POX A; 
#chains in the Genus database with same CATH topology
 3PGS A;  2KXP A;  3KVD D;  3LK3 A;  3POQ A;  4FSP A;  3SZD A;  1ORM A;  4RJW A;  5H2F O;  4O3Y A;  3TZG A;  1GFN A;  4KR4 A;  1G90 A;  3T0S A;  5EE2 A;  4O3W A;  3T20 A;  1YS5 A;  4G75 A;  4UB6 O;  4FSO A;  3SYB A;  4AYD C;  3BRY A;  4AYN A;  3AA1 A;  5IYU A;  4LSI A;  4Z3T A;  1GFM A;  4RLC A;  4LSH A;  1GFQ A;  1QJP A;  2F1C X;  3JTY A;  4PR7 A;  4FT6 A;  2KDY A;  4O3X B;  1ZHT A;  4O3Z A;  4CTD A;  3AAE B;  3NJT A;  2Y0L A;  3AAA A;  3VY9 X;  5GTH O;  2XE5 A;  2ZLD A;  5ADX L;  1OPF A;  5E79 O;  4JFB A;  4KR8 A;  4AYM C;  3AA0 A;  4AKR B;  2IWV A;  6PRN A;  2M07 A;  5ADX K;  3G7G A;  1ZHZ A;  1PHO A;  3A2S X;  3EMN X;  4FZM A;  4QQ1 A;  1T1L A;  4N75 A;  5B5E O;  4AKM A;  4AFK A;  1T16 A;  3LK4 1;  5G38 A;  2XE1 A;  3SY9 A;  4D64 A;  3AA6 B;  4GF4 A;  4AYI D;  2ODJ A;  2Y7S A;  3DWO X;  3LK2 B;  1ZHY A;  2POR A;  2X9K A;  3AA7 B;  1QJ9 A;  3O0E A;  4FZL A;  5G39 A;  1Q9G A;  3SYS A;  1Q9F A;  2Y0K A;  4N58 A;  4AYE C;  1PRN A;  3FYX A;  2XE3 A;  4O49 A;  4O4U A;  3PF1 A;  1BT9 A;  4FRT A;  4FRX A;  2W81 C;  3PQU A;  3POR A;  4RLB A;  2R4P A;  4LSE A;  2KZ7 B;  3POU A;  2XMX A;  5DL7 A;  5B66 O;  5KAF O;  2WVP A;  2XE2 A;  3HOE A;  3PQS A;  3QRC A;  4FZN A;  4U9C A;  3RBH A;  3UU2 A;  4C4V A;  2GE4 A;  1OSM A;  4GCQ A;  2K0L A;  3WI4 A;  2WJQ A;  2OMF A;  2KXP B;  3BRZ A;  3DA3 A;  3LK3 B;  3PRN A;  2N2L A;  1IZN B;  3HWB A;  4PJ0 O;  7PRN A;  2LFU A;  3VE1 A;  3VZT X;  2MNH A;  1P4T A;  4D65 A;  3K19 A;  3VZU X;  4O4X A;  3HW9 A;  4FOZ A;  5JDP A;  1THQ A;  4GCS A;  3VY8 X;  2R4O A;  4RL9 A;  3VZW X;  2WJR A;  3AA1 B;  5D5D A;  1BXW A;  3JCU O;  5AFU K;  1MM5 A;  2N2M A;  2XTR A;  4XNK A;  3DA4 A;  3SY7 A;  4C69 X;  2JMM A;  2XTQ A;  5DL8 A;  2LHF A;  3WI5 A;  4XNL A;  1H6S 1;  5GV0 A;  2R88 A;  2ERV A;  5T5F A;  5GTI O;  4E1S A;  3AAE A;  2M06 A;  4PUX A;  1GFO A;  3DWN A;  4FMS A;  5DL5 A;  2FGQ X;  3T24 A;  4F4B A;  1HXX A;  2KC0 A;  4LSF A;  5G26 A;  8PRN A;  4FUV A;  2Y0H A;  4UB8 O;  4AKR A;  5FVN A;  3V8U A;  3PGU A;  3QRA A;  2IWW A;  2F1T A;  5KAI O;  5PRN A;  4N59 A;  3A0H O;  1IZN A;  3UPG A;  2PRN A;  3SZV A;  2XG6 A;  3BS0 A;  4FES A;  1GFP A;  3GP6 A;  3HOL A;  4G76 A;  3UAQ A;  4C00 A;  1HXU A;  2K4T A;  2FGR A;  4E1T A;  3AA6 A;  4JCH A;  1ZHW A;  1MM4 A;  1S5L O;  2Y2X A;  3C5O A;  2QTK A;  3LK2 A;  4K3C A;  3VE2 A;  4K3B A;  1HXT A;  5DL6 A;  1E54 A;  3NSG A;  3AA7 A;  2X27 X;  4GCP A;  4B61 A;  4N74 A;  2O4V A;  5AFU L;  2ZFG A;  4GHB A;  3DZM A;  3LK4 2;  2R4L A;  4RJX A;  5TIS O;  2YPV A;  4D5U A;  2W80 C;  2F1V A;  4KRA A;  2J4U P;  1ZHX A;  1MPF A;  2R89 A;  2JQY A;  3AAA B;  4BUM X;  5G3A A;  1QJ8 A;  1BH3 A;  2AXT O;  2KZ7 A;  2MHL A;  4AUI A;  3A0B O;  4IL6 O;  2J1N A;  4C4V B;  3PGR A;  2R8A A;  3KZI O;  2R4N A;  4FQE A;  3AA0 B;  2YNK A;  3WU2 O;  4AZL A;  3POX A; 
#chains in the Genus database with same CATH homology
 2KXP A;  3KVD D;  3LK3 A;  3POQ A;  4FSP A;  3SZD A;  1ORM A;  4RJW A;  4O3Y A;  3TZG A;  1GFN A;  4KR4 A;  1G90 A;  3T0S A;  5EE2 A;  4O3W A;  3T20 A;  1YS5 A;  4G75 A;  4FSO A;  3SYB A;  4AYD C;  4AYN A;  3AA1 A;  5IYU A;  4LSI A;  4Z3T A;  1GFM A;  4RLC A;  4LSH A;  1GFQ A;  1QJP A;  3JTY A;  4FT6 A;  2KDY A;  4O3X B;  1ZHT A;  4O3Z A;  3AAE B;  2Y0L A;  3AAA A;  3VY9 X;  2XE5 A;  2ZLD A;  5ADX L;  1OPF A;  4JFB A;  4KR8 A;  4AYM C;  3AA0 A;  4AKR B;  6PRN A;  2M07 A;  5ADX K;  3G7G A;  1ZHZ A;  1PHO A;  3A2S X;  3EMN X;  4FZM A;  4QQ1 A;  4AKM A;  4AFK A;  3LK4 1;  2XE1 A;  3SY9 A;  4D64 A;  3AA6 B;  4GF4 A;  4AYI D;  2ODJ A;  2Y7S A;  3LK2 B;  1ZHY A;  2POR A;  3AA7 B;  1QJ9 A;  3O0E A;  4FZL A;  1Q9G A;  3SYS A;  1Q9F A;  2Y0K A;  4N58 A;  4AYE C;  1PRN A;  3FYX A;  2XE3 A;  4O49 A;  4O4U A;  1BT9 A;  4FRT A;  4FRX A;  2W81 C;  3PQU A;  3POR A;  4RLB A;  4LSE A;  2KZ7 B;  3POU A;  2XMX A;  5DL7 A;  3UU2 A;  2XE2 A;  3HOE A;  3PQS A;  3QRC A;  4FZN A;  4U9C A;  3RBH A;  2GE4 A;  1OSM A;  4GCQ A;  2K0L A;  3WI4 A;  2OMF A;  2KXP B;  3DA3 A;  3LK3 B;  3PRN A;  7PRN A;  2N2L A;  1IZN B;  3HWB A;  2LFU A;  3VE1 A;  3VZT X;  2MNH A;  1P4T A;  4D65 A;  3K19 A;  3VZU X;  4O4X A;  3HW9 A;  4FOZ A;  5JDP A;  1THQ A;  4GCS A;  3VY8 X;  4RL9 A;  3VZW X;  3AA1 B;  5D5D A;  1BXW A;  5AFU K;  1MM5 A;  2N2M A;  2XTR A;  4XNK A;  3DA4 A;  3SY7 A;  4C69 X;  2JMM A;  2XTQ A;  5DL8 A;  2LHF A;  3WI5 A;  4XNL A;  1H6S 1;  5GV0 A;  2ERV A;  5T5F A;  4E1S A;  3AAE A;  2M06 A;  4PUX A;  1GFO A;  5DL5 A;  4FMS A;  2FGQ X;  3T24 A;  4F4B A;  1HXX A;  2KC0 A;  4LSF A;  5G26 A;  8PRN A;  4FUV A;  2Y0H A;  4AKR A;  5FVN A;  3V8U A;  3QRA A;  2F1T A;  5PRN A;  4N59 A;  3UPG A;  1IZN A;  2PRN A;  3SZV A;  2XG6 A;  4FES A;  1GFP A;  3GP6 A;  3HOL A;  4G76 A;  3UAQ A;  1HXU A;  2K4T A;  2FGR A;  4E1T A;  3AA6 A;  4JCH A;  1ZHW A;  1MM4 A;  2Y2X A;  3C5O A;  3LK2 A;  2QTK A;  3VE2 A;  1HXT A;  5DL6 A;  1E54 A;  3NSG A;  3AA7 A;  2X27 X;  4GCP A;  4B61 A;  5AFU L;  2O4V A;  2ZFG A;  4GHB A;  3LK4 2;  4RJX A;  2YPV A;  4D5U A;  2W80 C;  2F1V A;  4KRA A;  2J4U P;  1ZHX A;  1MPF A;  3AAA B;  4BUM X;  4AUI A;  1QJ8 A;  1BH3 A;  2KZ7 A;  2MHL A;  2J1N A;  3AA0 B;  2YNK A;  4AZL A;  3POX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3VZTX

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations