3WU2 | Genus

Total Genus 52

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	52
sequence length	244
structure length	244
Chain Sequence	QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Electron transport, photosynthesis
publication title	Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 A pubmed doi rcsb
molecule keywords	Photosystem Q(B) protein
total genus	52
structure length	244
sequence length	244
chains with identical sequence	o
ec nomenclature
pdb deposition date	2014-04-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
O	PF01716	MSP	Manganese-stabilising protein / photosystem II polypeptide

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.30	Mainly Beta	Beta Barrel	Porin	Photosystem II, cytochrome c-550 precursor	3wu2O01
3.30.2050.10	Alpha Beta	2-Layer Sandwich	photosynthetic oxygen evolving center fold	photosynthetic oxygen evolving center domain	3wu2O02

3A0HO 4UB8O 5TISO 3JCUO 4UB6O 5E79O 5G38A 5KAFO 4PJ0O 5H2FO 1S5LO 3A0BO 5B5EO 5KAIO 5GTHO 4IL6O 3KZIO 5B66O 5G3AA 2AXTO 5G39A 5GTIO 3WU2O
chains in the Genus database with same CATH superfamily

2XTRA 3LK3B 3T24A 4FZMA 2N2LA 2X9KA 1ORMA 3VZWX 2GE4A 3SY9A 4AYNA 1IZNB 3T0SA 1HXTA 2KC0A 4KR8A 4FQEA 5G26A 1GFMA 2FGQX 2QTKA 3LK2A 1ZHZA 2FGRA 4FSOA 4N58A 4UB6O 5E79O 5G38A 2KXPA 3PF1A 3QRCA 4FOZA 4K3BA 4C4VB 2YPVA 2YNKA 4G76A 4O4XA 4C00A 3SYBA 3HOEA 4GCPA 5KAIO 3WU2O 4RLBA 3AA1B 2K0LA 2OMFA 3AAEA 1BH3A 4RJWA 2XE5A 3POQA 4CTDA 3EMNX 2PRNA 3VE2A 4AFKA 5B66O 3QRAA 2M07A 2R4NA 2LHFA 1MPFA 5DL8A 2J1NA 3RBHA 1Q9GA 5GTIO 1QJPA 2XMXA 3WI4A 4FSPA 4GCQA 2XTQA 5GV0A 1BT9A 1GFOA 3AA6A 4JFBA 3A0HO 3PQSA 4G75A 3PQUA 4O49A 3VY8X 8PRNA 4RLCA 4UB8O 2R4OA 1YS5A 2KDYA 1HXXA 4RJXA 3LK42 1ZHTA 4GF4A 3C5OA 5D5DA 3UU2A 4AKRA 3VZTX 4B61A 2R89A 3T20A 3UAQA 1Q9FA 2ZLDA 2WJQA 3NJTA 4N75A 5AFUK 2R8AA 2LFUA 4FRXA 2ODJA 2IWVA 4C4VA 4RL9A 1GFQA 2W81C 2R4LA 3BRZA 3DWNA 3HOLA 4FZNA 2XE3A 3LK41 3VY9X 3AA1A 2Y0HA 1OPFA 3AA7A 4O4UA 5FVNA 4N74A 4D65A 1T1LA 2N2MA 2ERVA 3AAAB 3BS0A 3KZIO 4LSFA 3K19A 2F1VA 1MM4A 2KZ7A 2Y0LA 3GP6A 5AFUL 3UPGA 3DZMA 4E1SA 1G90A 3AA0A 1T16A 4LSEA 4AYMC 4AYID 1PRNA 2JMMA 4PR7A 5EE2A 3PGUA 3O0EA 3PORA 7PRNA 3LK3A 3PGSA 3SZDA 5ADXL 1HXUA 2MNHA 3LK2B 2MHLA 4JCHA 5TISO 3DA4A 4K3CA 1IZNA 2F1CX 4D64A 3NSGA 3PGRA 3DWOX 1QJ8A 2ZFGA 4GHBA 5KAFO 3SZVA 5DL6A 4PJ0O 5H2FO 2R4PA 3AAEB 4F4BA 2XG6A 2W80C 3DA3A 2WJRA 1E54A 4KR4A 4O3YA 5T5FA 1QJ9A 4LSIA 4QQ1A 5ADXK 1ZHYA 3TZGA 3FYXA 3AAAA 5DL7A 2F1TA 5G3AA 2O4VA 2JQYA 3PRNA 2Y0KA 4C69X 2Y2XA 5DL5A 4XNLA 4FZLA 4E1TA 5JDPA 3KVDD 3A2SX 2Y7SA 1ZHWA 2M06A 4D5UA 4AYDC 3V8UA 2XE2A 4FT6A 1GFPA 1ZHXA 4KRAA 3VE1A 4AKRB 1PHOA 3BRYA 4AZLA 4XNKA 4O3XB 5PRNA 2K4TA 1H6S1 4O3WA 4FMSA 3JCUO 4LSHA 2IWWA 2KXPB 3VZUX 1P4TA 3JTYA 3POUA 4FRTA 1BXWA 3SYSA 2R88A 6PRNA 1GFNA 1S5LO 3A0BO 3POXA 3SY7A 4AUIA 5B5EO 5GTHO 3AA7B 4IL6O 1MM5A 2PORA 2WVPA 4FESA 4O3ZA 1OSMA 4FUVA 5IYUA 4GCSA 2KZ7B 3G7GA 4AKMA 4AYEC 3WI5A 4BUMX 2AXTO 4N59A 5G39A 2X27X 3HWBA 4Z3TA 3HW9A 4PUXA 2J4UP 3AA0B 1THQA 4U9CA 3AA6B 2XE1A
chains in the Genus database with same CATH topology

3A0HO 4UB8O 5TISO 3JCUO 4UB6O 5E79O 5G38A 5KAFO 4PJ0O 5H2FO 1S5LO 3A0BO 5B5EO 5KAIO 5GTHO 4IL6O 3KZIO 5B66O 5G3AA 2AXTO 5G39A 5GTIO 3WU2O
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3A0H O;  4UB8 O;  5TIS O;  3JCU O;  4UB6 O;  5E79 O;  5G38 A;  5KAF O;  4PJ0 O;  5H2F O;  1S5L O;  3A0B O;  5B5E O;  5KAI O;  5GTH O;  4IL6 O;  3KZI O;  5B66 O;  5G3A A;  2AXT O;  5G39 A;  5GTI O;  3WU2 O; 
#chains in the Genus database with same CATH topology
 2XTR A;  3LK3 B;  3T24 A;  4FZM A;  2N2L A;  2X9K A;  1ORM A;  3VZW X;  2GE4 A;  3SY9 A;  4AYN A;  1IZN B;  3T0S A;  1HXT A;  2KC0 A;  4KR8 A;  4FQE A;  5G26 A;  1GFM A;  2FGQ X;  2QTK A;  3LK2 A;  1ZHZ A;  2FGR A;  4FSO A;  4N58 A;  4UB6 O;  5E79 O;  5G38 A;  2KXP A;  3PF1 A;  3QRC A;  4FOZ A;  4K3B A;  4C4V B;  2YPV A;  2YNK A;  4G76 A;  4O4X A;  4C00 A;  3SYB A;  3HOE A;  4GCP A;  5KAI O;  3WU2 O;  4RLB A;  3AA1 B;  2K0L A;  2OMF A;  3AAE A;  1BH3 A;  4RJW A;  2XE5 A;  3POQ A;  4CTD A;  3EMN X;  2PRN A;  3VE2 A;  4AFK A;  5B66 O;  3QRA A;  2M07 A;  2R4N A;  2LHF A;  1MPF A;  5DL8 A;  2J1N A;  3RBH A;  1Q9G A;  5GTI O;  1QJP A;  2XMX A;  3WI4 A;  4FSP A;  4GCQ A;  2XTQ A;  5GV0 A;  1BT9 A;  1GFO A;  3AA6 A;  4JFB A;  3A0H O;  3PQS A;  4G75 A;  3PQU A;  4O49 A;  3VY8 X;  8PRN A;  4RLC A;  4UB8 O;  2R4O A;  1YS5 A;  2KDY A;  1HXX A;  4RJX A;  3LK4 2;  1ZHT A;  4GF4 A;  3C5O A;  5D5D A;  3UU2 A;  4AKR A;  3VZT X;  4B61 A;  2R89 A;  3T20 A;  3UAQ A;  1Q9F A;  2ZLD A;  2WJQ A;  3NJT A;  4N75 A;  5AFU K;  2R8A A;  2LFU A;  4FRX A;  2ODJ A;  2IWV A;  4C4V A;  4RL9 A;  1GFQ A;  2W81 C;  2R4L A;  3BRZ A;  3DWN A;  3HOL A;  4FZN A;  2XE3 A;  3LK4 1;  3VY9 X;  3AA1 A;  2Y0H A;  1OPF A;  3AA7 A;  4O4U A;  5FVN A;  4N74 A;  4D65 A;  1T1L A;  2N2M A;  2ERV A;  3AAA B;  3BS0 A;  3KZI O;  4LSF A;  3K19 A;  2F1V A;  1MM4 A;  2KZ7 A;  2Y0L A;  3GP6 A;  5AFU L;  3UPG A;  3DZM A;  4E1S A;  1G90 A;  3AA0 A;  1T16 A;  4LSE A;  4AYM C;  4AYI D;  1PRN A;  2JMM A;  4PR7 A;  5EE2 A;  3PGU A;  3O0E A;  3POR A;  7PRN A;  3LK3 A;  3PGS A;  3SZD A;  5ADX L;  1HXU A;  2MNH A;  3LK2 B;  2MHL A;  4JCH A;  5TIS O;  3DA4 A;  4K3C A;  1IZN A;  2F1C X;  4D64 A;  3NSG A;  3PGR A;  3DWO X;  1QJ8 A;  2ZFG A;  4GHB A;  5KAF O;  3SZV A;  5DL6 A;  4PJ0 O;  5H2F O;  2R4P A;  3AAE B;  4F4B A;  2XG6 A;  2W80 C;  3DA3 A;  2WJR A;  1E54 A;  4KR4 A;  4O3Y A;  5T5F A;  1QJ9 A;  4LSI A;  4QQ1 A;  5ADX K;  1ZHY A;  3TZG A;  3FYX A;  3AAA A;  5DL7 A;  2F1T A;  5G3A A;  2O4V A;  2JQY A;  3PRN A;  2Y0K A;  4C69 X;  2Y2X A;  5DL5 A;  4XNL A;  4FZL A;  4E1T A;  5JDP A;  3KVD D;  3A2S X;  2Y7S A;  1ZHW A;  2M06 A;  4D5U A;  4AYD C;  3V8U A;  2XE2 A;  4FT6 A;  1GFP A;  1ZHX A;  4KRA A;  3VE1 A;  4AKR B;  1PHO A;  3BRY A;  4AZL A;  4XNK A;  4O3X B;  5PRN A;  2K4T A;  1H6S 1;  4O3W A;  4FMS A;  3JCU O;  4LSH A;  2IWW A;  2KXP B;  3VZU X;  1P4T A;  3JTY A;  3POU A;  4FRT A;  1BXW A;  3SYS A;  2R88 A;  6PRN A;  1GFN A;  1S5L O;  3A0B O;  3POX A;  3SY7 A;  4AUI A;  5B5E O;  5GTH O;  3AA7 B;  4IL6 O;  1MM5 A;  2POR A;  2WVP A;  4FES A;  4O3Z A;  1OSM A;  4FUV A;  5IYU A;  4GCS A;  2KZ7 B;  3G7G A;  4AKM A;  4AYE C;  3WI5 A;  4BUM X;  2AXT O;  4N59 A;  5G39 A;  2X27 X;  3HWB A;  4Z3T A;  3HW9 A;  4PUX A;  2J4U P;  3AA0 B;  1THQ A;  4U9C A;  3AA6 B;  2XE1 A; 
#chains in the Genus database with same CATH homology
 3A0H O;  4UB8 O;  5TIS O;  3JCU O;  4UB6 O;  5E79 O;  5G38 A;  5KAF O;  4PJ0 O;  5H2F O;  1S5L O;  3A0B O;  5B5E O;  5KAI O;  5GTH O;  4IL6 O;  3KZI O;  5B66 O;  5G3A A;  2AXT O;  5G39 A;  5GTI O;  3WU2 O;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3WU2O

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations