4AFKA

In meso structure of alginate transporter, alge, from pseudomonas aeruginosa, pao1
Total Genus 131
50100150200250300350400020406080100120
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
131
sequence length
454
structure length
430
Chain Sequence
EAPKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIETDTLQSDTDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPEDKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIATGKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
50100150200250300350400400300200100
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (55-58)TII'1 (81-84)TIV1 (53-56)S3 (84-95)S2 (66-81)TI'1 (57-60)S5 (144-154)TIV3 (108-119)TI2 (102-105)TIV2 (95-98)TVIII1 (100-103)TVIII2 (122-125)TI3 (141-144)TIV4 (117-120)S6 (162-173)TIV5 (158-161)TI4 (155-158)S7 (177-185)TI5 (174-177)TII2 (216-219)S9 (219-230)S8 (204-216)TII1 (201-204)3H1 (199-201)TI6 (191-194)S11 (248-261)TI7 (242-245)S10 (239-240)TVIII4 (214-217)S12 (272-293)TVIII5 (270-273)TI9 (265-268)TI8 (262-265)TII3 (236-239)TIV6 (260-263)S13 (296-319)3H2 (338-340)TIV7 (292-295)TI13 (364-367)TI10 (321-324)TIV8 (347-350)TII'2 (388-391)S14 (324-333)S18 (392-403)S15 (353-354)TI11 (340-343)TIV10 (368-371)TIV9 (367-370)TII4 (420-423)S17 (377-388)TIV11 (374-377)TI14 (405-408)TVIII6 (403-406)S1 (42-54)S4 (124-135)TVIII3 (137-140)TI12 (355-358)S16 (363-364)S19 (425-437)Updating...
connected with : NaN
molecule tags Membrane protein
source organism Pseudomonas aeruginosa
publication title A Conformational Landscape for Alginate Secretion Across the Outer Membrane of Pseudomonas Aeruginosa.
pubmed doi rcsb
molecule keywords ALGINATE PRODUCTION PROTEIN ALGE
total genus 131
structure length 430
sequence length 454
ec nomenclature
pdb deposition date 2012-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13372 Alginate_exp Alginate export
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.100 Mainly Beta Beta Barrel Porin Porin 4afkA00
4XNKA 4XNLA 5D5DA 4B61A 3RBHA 4AZLA 5IYUA 4AFKA
chains in the Genus database with same CATH superfamily
3LK2A 3VZTX 4FZNA 1OSMA 4AYMC 2FGRA 4UB6O 2ERVA 4RJWA 3T24A 1BT9A 4KR8A 1ZHZA 2MNHA 3T20A 5KAFO 5G39A 1ZHWA 4XNLA 3AA1B 2LHFA 4FSOA 4AUIA 1BH3A 1Q9GA 2Y0LA 2XE5A 3AA7A 3NJTA 5D5DA 5DL6A 5DL7A 4XNKA 1HXTA 2M06A 2R4NA 3FYXA 3A0HO 3KZIO 2YPVA 3PQUA 4FMSA 4RJXA 4UB8O 3NSGA 4FSPA 3HOLA 4PR7A 2IWWA 2J4UP 5GV0A 1GFMA 3LK3B 3SY7A 2XE2A 1P4TA 5G3AA 5G38A 1GFQA 2KDYA 4RL9A 2R4PA 2XTRA 5FVNA 4N58A 5KAIO 4O4XA 2OMFA 2F1TA 2PRNA 4F4BA 2WJRA 1HXUA 1QJ9A 2R4OA 3AA6B 2WJQA 1HXXA 1YS5A 2FGQX 3PGRA 4GHBA 4JCHA 4C4VB 2Y0HA 2KZ7A 1T16A 4FRTA 4U9CA 1MM4A 2QTKA 4AYEC 2Y7SA 3A2SX 3KVDD 3QRCA 4GCSA 4GCQA 4O3ZA 4AKMA 2W81C 4C4VA 4FESA 2XE3A 2XE1A 2X9KA 4O3XB 5GTIO 2JMMA 3DA3A 3VE1A 4G76A 2ODJA 4RLCA 5TISO 3SZDA 2Y0KA 4LSHA 1ZHYA 4K3BA 4FOZA 3VY8X 3HOEA 2KXPB 2R8AA 2WVPA 3AA0B 2PORA 3GP6A 3AA1A 1QJPA 3BRYA 3PGUA 2YNKA 3DWNA 3TZGA 5JDPA 5PRNA 2Y2XA 4N74A 1IZNB 3POXA 3AA0A 3UPGA 3DA4A 3PF1A 4AFKA 5IYUA 4RLBA 4G75A 4LSEA 4N59A 2ZLDA 1QJ8A 2JQYA 2MHLA 3K19A 3LK3A 1E54A 2AXTO 3V8UA 3BRZA 4Z3TA 5T5FA 3A0BO 2F1VA 2M07A 1ORMA 3JCUO 5EE2A 3UAQA 4AKRB 3EMNX 4IL6O 3DZMA 4LSIA 3VZUX 3SYSA 4D65A 3QRAA 2W80C 4AYID 5ADXK 5AFUK 3PRNA 3AA6A 4PUXA 3AAAB 4GF4A 4FZLA 5B66O 3LK42 3PQSA 3VE2A 1H6S1 3JTYA 4O49A 3VY9X 3AAEB 3LK41 2J1NA 2K4TA 4BUMX 1GFNA 4PJ0O 4AYDC 3WI4A 6PRNA 4LSFA 2R89A 3BS0A 4AZLA 1T1LA 1MPFA 2KXPA 2K0LA 2XTQA 4FRXA 3WU2O 3LK2B 2XG6A 3C5OA 3HWBA 3O0EA 4KRAA 3VZWX 1IZNA 2XMXA 4D64A 4O4UA 2LFUA 4O3YA 4JFBA 2F1CX 2ZFGA 5ADXL 3PGSA 5AFUL 4K3CA 1GFPA 4C00A 5GTHO 2KC0A 7PRNA 4FUVA 5G26A 4AKRA 4AYNA 5DL5A 3AA7B 3PORA 1Q9FA 1ZHTA 4FT6A 4KR4A 8PRNA 2GE4A 1BXWA 1GFOA 1PRNA 1S5LO 3AAAA 3RBHA 1ZHXA 1MM5A 2N2LA 2R4LA 2X27X 4N75A 4O3WA 3UU2A 1PHOA 3POQA 2IWVA 4QQ1A 4E1TA 4D5UA 4C69X 4FZMA 1OPFA 3AAEA 5H2FO 3G7GA 4B61A 3T0SA 2R88A 5E79O 2O4VA 4GCPA 5B5EO 5DL8A 4E1SA 1THQA 3POUA 3SY9A 3SZVA 3WI5A 1G90A 4FQEA 4CTDA 3SYBA 2KZ7B 3DWOX 2N2MA 3HW9A
chains in the Genus database with same CATH topology
3LK2A 3VZTX 4FZNA 1OSMA 4AYMC 2FGRA 2ERVA 4RJWA 3T24A 1BT9A 4KR8A 1ZHZA 2MNHA 3T20A 4AUIA 1ZHWA 4XNLA 3AA1B 2LHFA 4FSOA 1BH3A 1Q9GA 2Y0LA 2XE5A 3AA7A 5D5DA 5DL6A 5DL7A 4XNKA 1HXTA 2M06A 3FYXA 3PQUA 4FMSA 4RJXA 2YPVA 3NSGA 4FSPA 3HOLA 2J4UP 1GFMA 3LK3B 3SY7A 2XE2A 1P4TA 1GFQA 2KDYA 4RL9A 2XTRA 5FVNA 4N58A 4O4XA 2OMFA 2F1TA 2PRNA 4F4BA 1HXUA 1QJ9A 3AA6B 1HXXA 1YS5A 2FGQX 4GHBA 4JCHA 2Y0HA 2KZ7A 4FRTA 4U9CA 1MM4A 2QTKA 4AYEC 2Y7SA 3A2SX 3KVDD 3QRCA 4GCSA 4GCQA 4O3ZA 4AKMA 2W81C 5GV0A 4FESA 2XE3A 2XE1A 4O3XB 3VE1A 2JMMA 3DA3A 4G76A 2ODJA 4RLCA 3SZDA 2Y0KA 4LSHA 1ZHYA 4FOZA 3VY8X 3HOEA 2KXPB 3AA0B 3PORA 3GP6A 2PORA 3TZGA 3AA1A 1QJPA 5JDPA 2YNKA 5PRNA 2Y2XA 1IZNB 3POXA 3AA0A 3UPGA 3DA4A 4AFKA 5IYUA 4RLBA 4G75A 4LSEA 4N59A 2ZLDA 1QJ8A 2MHLA 3K19A 4Z3TA 3LK3A 1E54A 3V8UA 5T5FA 3UAQA 2F1VA 2M07A 1ORMA 5EE2A 4AKRB 3EMNX 4LSIA 3VZUX 3SYSA 4D65A 3QRAA 2W80C 4AYID 5ADXK 5AFUK 3PRNA 3AA6A 4PUXA 3AAAB 4GF4A 4FZLA 3LK42 3PQSA 3VE2A 1H6S1 3JTYA 4O49A 3VY9X 3AAEB 3LK41 2J1NA 2K4TA 4BUMX 1GFNA 4AYDC 3WI4A 6PRNA 4LSFA 4AZLA 1MPFA 2KXPA 2K0LA 2XTQA 4FRXA 3LK2B 2XG6A 3C5OA 3HWBA 3O0EA 4KRAA 3VZWX 1IZNA 2XMXA 4D64A 4O4UA 2LFUA 4O3YA 4JFBA 2ZFGA 5ADXL 5AFUL 1GFPA 2KC0A 7PRNA 4FUVA 5G26A 4AKRA 4AYNA 5DL5A 3AA7B 1Q9FA 1ZHTA 4FT6A 4KR4A 8PRNA 2GE4A 1BXWA 1GFOA 1PRNA 3AAAA 3RBHA 1ZHXA 1MM5A 2N2LA 2X27X 3UU2A 4O3WA 1PHOA 3POQA 4QQ1A 4E1TA 4D5UA 4C69X 4FZMA 1OPFA 3AAEA 3G7GA 4B61A 3T0SA 2O4VA 4GCPA 5DL8A 4E1SA 1THQA 3POUA 3SY9A 3SZVA 3WI5A 1G90A 3SYBA 2KZ7B 2N2MA 3HW9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XNK A;  4XNL A;  5D5D A;  4B61 A;  3RBH A;  4AZL A;  5IYU A;  4AFK A; 
#chains in the Genus database with same CATH topology
 3LK2 A;  3VZT X;  4FZN A;  1OSM A;  4AYM C;  2FGR A;  4UB6 O;  2ERV A;  4RJW A;  3T24 A;  1BT9 A;  4KR8 A;  1ZHZ A;  2MNH A;  3T20 A;  5KAF O;  5G39 A;  1ZHW A;  4XNL A;  3AA1 B;  2LHF A;  4FSO A;  4AUI A;  1BH3 A;  1Q9G A;  2Y0L A;  2XE5 A;  3AA7 A;  3NJT A;  5D5D A;  5DL6 A;  5DL7 A;  4XNK A;  1HXT A;  2M06 A;  2R4N A;  3FYX A;  3A0H O;  3KZI O;  2YPV A;  3PQU A;  4FMS A;  4RJX A;  4UB8 O;  3NSG A;  4FSP A;  3HOL A;  4PR7 A;  2IWW A;  2J4U P;  5GV0 A;  1GFM A;  3LK3 B;  3SY7 A;  2XE2 A;  1P4T A;  5G3A A;  5G38 A;  1GFQ A;  2KDY A;  4RL9 A;  2R4P A;  2XTR A;  5FVN A;  4N58 A;  5KAI O;  4O4X A;  2OMF A;  2F1T A;  2PRN A;  4F4B A;  2WJR A;  1HXU A;  1QJ9 A;  2R4O A;  3AA6 B;  2WJQ A;  1HXX A;  1YS5 A;  2FGQ X;  3PGR A;  4GHB A;  4JCH A;  4C4V B;  2Y0H A;  2KZ7 A;  1T16 A;  4FRT A;  4U9C A;  1MM4 A;  2QTK A;  4AYE C;  2Y7S A;  3A2S X;  3KVD D;  3QRC A;  4GCS A;  4GCQ A;  4O3Z A;  4AKM A;  2W81 C;  4C4V A;  4FES A;  2XE3 A;  2XE1 A;  2X9K A;  4O3X B;  5GTI O;  2JMM A;  3DA3 A;  3VE1 A;  4G76 A;  2ODJ A;  4RLC A;  5TIS O;  3SZD A;  2Y0K A;  4LSH A;  1ZHY A;  4K3B A;  4FOZ A;  3VY8 X;  3HOE A;  2KXP B;  2R8A A;  2WVP A;  3AA0 B;  2POR A;  3GP6 A;  3AA1 A;  1QJP A;  3BRY A;  3PGU A;  2YNK A;  3DWN A;  3TZG A;  5JDP A;  5PRN A;  2Y2X A;  4N74 A;  1IZN B;  3POX A;  3AA0 A;  3UPG A;  3DA4 A;  3PF1 A;  4AFK A;  5IYU A;  4RLB A;  4G75 A;  4LSE A;  4N59 A;  2ZLD A;  1QJ8 A;  2JQY A;  2MHL A;  3K19 A;  3LK3 A;  1E54 A;  2AXT O;  3V8U A;  3BRZ A;  4Z3T A;  5T5F A;  3A0B O;  2F1V A;  2M07 A;  1ORM A;  3JCU O;  5EE2 A;  3UAQ A;  4AKR B;  3EMN X;  4IL6 O;  3DZM A;  4LSI A;  3VZU X;  3SYS A;  4D65 A;  3QRA A;  2W80 C;  4AYI D;  5ADX K;  5AFU K;  3PRN A;  3AA6 A;  4PUX A;  3AAA B;  4GF4 A;  4FZL A;  5B66 O;  3LK4 2;  3PQS A;  3VE2 A;  1H6S 1;  3JTY A;  4O49 A;  3VY9 X;  3AAE B;  3LK4 1;  2J1N A;  2K4T A;  4BUM X;  1GFN A;  4PJ0 O;  4AYD C;  3WI4 A;  6PRN A;  4LSF A;  2R89 A;  3BS0 A;  4AZL A;  1T1L A;  1MPF A;  2KXP A;  2K0L A;  2XTQ A;  4FRX A;  3WU2 O;  3LK2 B;  2XG6 A;  3C5O A;  3HWB A;  3O0E A;  4KRA A;  3VZW X;  1IZN A;  2XMX A;  4D64 A;  4O4U A;  2LFU A;  4O3Y A;  4JFB A;  2F1C X;  2ZFG A;  5ADX L;  3PGS A;  5AFU L;  4K3C A;  1GFP A;  4C00 A;  5GTH O;  2KC0 A;  7PRN A;  4FUV A;  5G26 A;  4AKR A;  4AYN A;  5DL5 A;  3AA7 B;  3POR A;  1Q9F A;  1ZHT A;  4FT6 A;  4KR4 A;  8PRN A;  2GE4 A;  1BXW A;  1GFO A;  1PRN A;  1S5L O;  3AAA A;  3RBH A;  1ZHX A;  1MM5 A;  2N2L A;  2R4L A;  2X27 X;  4N75 A;  4O3W A;  3UU2 A;  1PHO A;  3POQ A;  2IWV A;  4QQ1 A;  4E1T A;  4D5U A;  4C69 X;  4FZM A;  1OPF A;  3AAE A;  5H2F O;  3G7G A;  4B61 A;  3T0S A;  2R88 A;  5E79 O;  2O4V A;  4GCP A;  5B5E O;  5DL8 A;  4E1S A;  1THQ A;  3POU A;  3SY9 A;  3SZV A;  3WI5 A;  1G90 A;  4FQE A;  4CTD A;  3SYB A;  2KZ7 B;  3DWO X;  2N2M A;  3HW9 A; 
#chains in the Genus database with same CATH homology
 3LK2 A;  3VZT X;  4FZN A;  1OSM A;  4AYM C;  2FGR A;  2ERV A;  4RJW A;  3T24 A;  1BT9 A;  4KR8 A;  1ZHZ A;  2MNH A;  3T20 A;  4AUI A;  1ZHW A;  4XNL A;  3AA1 B;  2LHF A;  4FSO A;  1BH3 A;  1Q9G A;  2Y0L A;  2XE5 A;  3AA7 A;  5D5D A;  5DL6 A;  5DL7 A;  4XNK A;  1HXT A;  2M06 A;  3FYX A;  3PQU A;  4FMS A;  4RJX A;  2YPV A;  3NSG A;  4FSP A;  3HOL A;  2J4U P;  1GFM A;  3LK3 B;  3SY7 A;  2XE2 A;  1P4T A;  1GFQ A;  2KDY A;  4RL9 A;  2XTR A;  5FVN A;  4N58 A;  4O4X A;  2OMF A;  2F1T A;  2PRN A;  4F4B A;  1HXU A;  1QJ9 A;  3AA6 B;  1HXX A;  1YS5 A;  2FGQ X;  4GHB A;  4JCH A;  2Y0H A;  2KZ7 A;  4FRT A;  4U9C A;  1MM4 A;  2QTK A;  4AYE C;  2Y7S A;  3A2S X;  3KVD D;  3QRC A;  4GCS A;  4GCQ A;  4O3Z A;  4AKM A;  2W81 C;  5GV0 A;  4FES A;  2XE3 A;  2XE1 A;  4O3X B;  3VE1 A;  2JMM A;  3DA3 A;  4G76 A;  2ODJ A;  4RLC A;  3SZD A;  2Y0K A;  4LSH A;  1ZHY A;  4FOZ A;  3VY8 X;  3HOE A;  2KXP B;  3AA0 B;  3POR A;  3GP6 A;  2POR A;  3TZG A;  3AA1 A;  1QJP A;  5JDP A;  2YNK A;  5PRN A;  2Y2X A;  1IZN B;  3POX A;  3AA0 A;  3UPG A;  3DA4 A;  4AFK A;  5IYU A;  4RLB A;  4G75 A;  4LSE A;  4N59 A;  2ZLD A;  1QJ8 A;  2MHL A;  3K19 A;  4Z3T A;  3LK3 A;  1E54 A;  3V8U A;  5T5F A;  3UAQ A;  2F1V A;  2M07 A;  1ORM A;  5EE2 A;  4AKR B;  3EMN X;  4LSI A;  3VZU X;  3SYS A;  4D65 A;  3QRA A;  2W80 C;  4AYI D;  5ADX K;  5AFU K;  3PRN A;  3AA6 A;  4PUX A;  3AAA B;  4GF4 A;  4FZL A;  3LK4 2;  3PQS A;  3VE2 A;  1H6S 1;  3JTY A;  4O49 A;  3VY9 X;  3AAE B;  3LK4 1;  2J1N A;  2K4T A;  4BUM X;  1GFN A;  4AYD C;  3WI4 A;  6PRN A;  4LSF A;  4AZL A;  1MPF A;  2KXP A;  2K0L A;  2XTQ A;  4FRX A;  3LK2 B;  2XG6 A;  3C5O A;  3HWB A;  3O0E A;  4KRA A;  3VZW X;  1IZN A;  2XMX A;  4D64 A;  4O4U A;  2LFU A;  4O3Y A;  4JFB A;  2ZFG A;  5ADX L;  5AFU L;  1GFP A;  2KC0 A;  7PRN A;  4FUV A;  5G26 A;  4AKR A;  4AYN A;  5DL5 A;  3AA7 B;  1Q9F A;  1ZHT A;  4FT6 A;  4KR4 A;  8PRN A;  2GE4 A;  1BXW A;  1GFO A;  1PRN A;  3AAA A;  3RBH A;  1ZHX A;  1MM5 A;  2N2L A;  2X27 X;  3UU2 A;  4O3W A;  1PHO A;  3POQ A;  4QQ1 A;  4E1T A;  4D5U A;  4C69 X;  4FZM A;  1OPF A;  3AAE A;  3G7G A;  4B61 A;  3T0S A;  2O4V A;  4GCP A;  5DL8 A;  4E1S A;  1THQ A;  3POU A;  3SY9 A;  3SZV A;  3WI5 A;  1G90 A;  3SYB A;  2KZ7 B;  2N2M A;  3HW9 A; 
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