4AKMA

Crystal structure of the human lysosome-associated membrane protein lamp-3 (aka dc-lamp)
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
155
structure length
155
Chain Sequence
VKTGIYQVLNGSRLCIKAEMGIQLIVQDKESVFSPRRYFNIDPNATQASGNCGTRKSNLLLNFQGGFVNLTFTKDEESYYISEVGAYLTVSDPETVYQGIKHAVVMFQTAVGHSFKCVSEQSLQLSAHLQVKTTDVQLQAFDFEDDHFGNVDECS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein
source organism Homo sapiens
publication title Crystal Structure of the Conserved Domain of the Dc Lysosomal Associated Membrane Protein: Implications for the Lysosomal Glycocalyx.
pubmed doi rcsb
molecule keywords LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN 3
total genus 22
structure length 155
sequence length 155
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-02-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01299 Lamp Lysosome-associated membrane glycoprotein (Lamp)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.110 Mainly Beta Beta Barrel Porin Porin 4akmA00
5GV0A 4AKMA
chains in the Genus database with same CATH superfamily
3WI4A 5DL7A 3GP6A 4PJ0O 2XTQA 3POQA 2Y0LA 3A0HO 2GE4A 3AA0B 3LK2A 4AYNA 3SY9A 4CTDA 3VE1A 4U9CA 2FGQX 3PQUA 1ZHXA 2KC0A 4AYID 3HW9A 2ZLDA 2XG6A 4LSHA 4O4UA 3UU2A 3HWBA 2R88A 3AAEA 5DL8A 4GHBA 2XE5A 2R4OA 4N75A 4UB6O 8PRNA 4K3CA 2XE2A 4FZNA 5FVNA 4D65A 4LSFA 2FGRA 3JTYA 3AA7A 4E1SA 4Z3TA 4FUVA 2J4UP 3O0EA 4LSIA 4UB8O 2R89A 4O3ZA 2X27X 1QJPA 4C4VB 3LK3B 4O3XB 4RJXA 3LK42 5KAIO 2KXPA 3HOEA 4AKRA 4AYEC 2F1TA 4GCPA 4AFKA 3PORA 4KR8A 4FMSA 4AUIA 3VZTX 3PF1A 4C69X 3VY9X 1BT9A 3LK41 4AZLA 4FZMA 3A2SX 1ZHYA 2XMXA 3AAAA 5G39A 1OSMA 1GFOA 3SY7A 1MM4A 3VY8X 1G90A 5GTHO 3LK2B 4FSOA 4F4BA 1OPFA 4FOZA 1H6S1 4XNLA 3SZDA 1QJ9A 2Y0HA 2WJRA 2Y0KA 4JFBA 2QTKA 3BS0A 3DWOX 3AA1A 3DA4A 2PORA 2X9KA 3HOLA 4O3WA 3POXA 4RL9A 2IWVA 5EE2A 3VE2A 1IZNA 2R4PA 4AKMA 5GTIO 3A0BO 3AAEB 4N59A 3K19A 4FSPA 4RLBA 3VZWX 4GCSA 3PGUA 4N58A 2R8AA 1YS5A 3UAQA 4B61A 5DL5A 3KVDD 4FZLA 3DWNA 3AA7B 3T0SA 3NSGA 3PRNA 3WU2O 2JMMA 2ERVA 4O4XA 5D5DA 4PR7A 3PGRA 3G7GA 2XTRA 4GCQA 2AXTO 3JCUO 3DZMA 3POUA 2M07A 2W81C 4FESA 2KXPB 2N2MA 4IL6O 4O49A 4PUXA 4AKRB 4C00A 3WI5A 1P4TA 2XE3A 3SZVA 3BRYA 2JQYA 5GV0A 3V8UA 4BUMX 3AA6A 2R4NA 4XNKA 5H2FO 2LHFA 2MNHA 3PQSA 2KZ7A 2PRNA 1BH3A 2ODJA 4FT6A 1T16A 4G75A 1Q9GA 1PRNA 3C5OA 3PGSA 5AFUK 3NJTA 3UPGA 5KAFO 1HXTA 1T1LA 4D5UA 2XE1A 1ZHWA 5ADXK 1PHOA 4FRXA 4O3YA 3BRZA 2R4LA 2W80C 1GFQA 3DA3A 4AYDC 3AA1B 5JDPA 2WJQA 5E79O 7PRNA 1ZHTA 3KZIO 2YPVA 2LFUA 1QJ8A 2K4TA 4JCHA 5ADXL 1THQA 1IZNB 2YNKA 1HXUA 3AA0A 5PRNA 1MM5A 2OMFA 5G26A 5G38A 5IYUA 3QRCA 3EMNX 3SYBA 2Y7SA 4RJWA 3T24A 6PRNA 2WVPA 3TZGA 3QRAA 4N74A 4K3BA 4LSEA 1HXXA 1Q9FA 4FQEA 3RBHA 1ORMA 4FRTA 4RLCA 2IWWA 4KR4A 3T20A 5B66O 5DL6A 3AAAB 4KRAA 2Y2XA 1E54A 3AA6B 2N2LA 2K0LA 4C4VA 4D64A 3LK3A 4E1TA 1MPFA 2F1CX 4QQ1A 2KZ7B 1ZHZA 5TISO 5T5FA 2ZFGA 1GFNA 2MHLA 5AFUL 2F1VA 5G3AA 4G76A 3FYXA 1BXWA 3SYSA 1S5LO 4GF4A 3VZUX 5B5EO 1GFPA 2J1NA 2KDYA 2O4VA 4AYMC 2M06A 1GFMA
chains in the Genus database with same CATH topology
3WI4A 5DL7A 3GP6A 2XTQA 3POQA 2Y0LA 3AA0B 2GE4A 4AYNA 3LK2A 3SY9A 4U9CA 2FGQX 3PQUA 1ZHXA 2KC0A 4AYID 3HW9A 2ZLDA 2XG6A 4LSHA 4O4UA 3UU2A 3HWBA 3AAEA 5DL8A 4GHBA 2XE5A 8PRNA 2XE2A 4FZNA 5FVNA 4D65A 4LSFA 2FGRA 3JTYA 3AA7A 4E1SA 4Z3TA 4FUVA 2J4UP 3O0EA 4LSIA 4O3ZA 2X27X 1QJPA 3LK3B 4O3XB 4RJXA 3LK42 4AKRA 2KXPA 3HOEA 4AYEC 2F1TA 4GCPA 4AFKA 3PORA 4KR8A 1GFMA 4FMSA 4AUIA 3VZTX 4C69X 3VY9X 1BT9A 3LK41 4AZLA 4FZMA 3A2SX 1ZHYA 2XMXA 3AAAA 1OSMA 1GFOA 3SY7A 1MM4A 3VY8X 1G90A 3LK2B 4FSOA 4F4BA 1OPFA 4FOZA 1H6S1 4XNLA 3SZDA 1QJ9A 2Y0HA 4JFBA 2Y0KA 4O3WA 2QTKA 4RL9A 3AA1A 3DA4A 2PORA 3HOLA 3VE2A 3VE1A 3POXA 5EE2A 1IZNA 4AKMA 4N59A 3AAEB 3K19A 4FSPA 4RLBA 3VZWX 4GCSA 4N58A 1YS5A 3UAQA 4B61A 5DL5A 3KVDD 4FZLA 3T0SA 3AA7B 3NSGA 3PRNA 2JMMA 2ERVA 4O4XA 5D5DA 3G7GA 2XTRA 4GCQA 7PRNA 3POUA 5IYUA 2M07A 4PUXA 4FESA 2KXPB 2N2MA 4O49A 4AKRB 3WI5A 1P4TA 2XE3A 3SZVA 5GV0A 3V8UA 4BUMX 3AA6A 4XNKA 2LHFA 2MNHA 3PQSA 2KZ7A 2PRNA 1BH3A 2ODJA 4FT6A 4G75A 1Q9GA 1PRNA 3C5OA 5AFUK 3UPGA 1HXTA 4D5UA 5ADXK 2XE1A 1ZHWA 1PHOA 4FRXA 4O3YA 4AYDC 2W80C 1GFQA 3DA3A 5JDPA 3AA1B 1ZHTA 2YPVA 2LFUA 1QJ8A 2K4TA 4JCHA 5ADXL 1THQA 1IZNB 2YNKA 1HXUA 3AA0A 5PRNA 1MM5A 2OMFA 5G26A 3QRCA 3EMNX 3SYBA 2Y7SA 4RJWA 3T24A 6PRNA 3TZGA 3QRAA 4LSEA 1HXXA 1Q9FA 3RBHA 1ORMA 4FRTA 4RLCA 4KR4A 3T20A 5DL6A 3AAAB 4KRAA 2Y2XA 1E54A 3AA6B 2N2LA 2K0LA 4E1TA 4D64A 3LK3A 1MPFA 4QQ1A 2KZ7B 1ZHZA 5T5FA 2ZFGA 1GFNA 2MHLA 5AFUL 2F1VA 4G76A 3FYXA 1BXWA 3SYSA 4GF4A 3VZUX 1GFPA 2J1NA 2KDYA 2O4VA 4AYMC 2M06A 2W81C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GV0 A;  4AKM A; 
#chains in the Genus database with same CATH topology
 3WI4 A;  5DL7 A;  3GP6 A;  4PJ0 O;  2XTQ A;  3POQ A;  2Y0L A;  3A0H O;  2GE4 A;  3AA0 B;  3LK2 A;  4AYN A;  3SY9 A;  4CTD A;  3VE1 A;  4U9C A;  2FGQ X;  3PQU A;  1ZHX A;  2KC0 A;  4AYI D;  3HW9 A;  2ZLD A;  2XG6 A;  4LSH A;  4O4U A;  3UU2 A;  3HWB A;  2R88 A;  3AAE A;  5DL8 A;  4GHB A;  2XE5 A;  2R4O A;  4N75 A;  4UB6 O;  8PRN A;  4K3C A;  2XE2 A;  4FZN A;  5FVN A;  4D65 A;  4LSF A;  2FGR A;  3JTY A;  3AA7 A;  4E1S A;  4Z3T A;  4FUV A;  2J4U P;  3O0E A;  4LSI A;  4UB8 O;  2R89 A;  4O3Z A;  2X27 X;  1QJP A;  4C4V B;  3LK3 B;  4O3X B;  4RJX A;  3LK4 2;  5KAI O;  2KXP A;  3HOE A;  4AKR A;  4AYE C;  2F1T A;  4GCP A;  4AFK A;  3POR A;  4KR8 A;  4FMS A;  4AUI A;  3VZT X;  3PF1 A;  4C69 X;  3VY9 X;  1BT9 A;  3LK4 1;  4AZL A;  4FZM A;  3A2S X;  1ZHY A;  2XMX A;  3AAA A;  5G39 A;  1OSM A;  1GFO A;  3SY7 A;  1MM4 A;  3VY8 X;  1G90 A;  5GTH O;  3LK2 B;  4FSO A;  4F4B A;  1OPF A;  4FOZ A;  1H6S 1;  4XNL A;  3SZD A;  1QJ9 A;  2Y0H A;  2WJR A;  2Y0K A;  4JFB A;  2QTK A;  3BS0 A;  3DWO X;  3AA1 A;  3DA4 A;  2POR A;  2X9K A;  3HOL A;  4O3W A;  3POX A;  4RL9 A;  2IWV A;  5EE2 A;  3VE2 A;  1IZN A;  2R4P A;  4AKM A;  5GTI O;  3A0B O;  3AAE B;  4N59 A;  3K19 A;  4FSP A;  4RLB A;  3VZW X;  4GCS A;  3PGU A;  4N58 A;  2R8A A;  1YS5 A;  3UAQ A;  4B61 A;  5DL5 A;  3KVD D;  4FZL A;  3DWN A;  3AA7 B;  3T0S A;  3NSG A;  3PRN A;  3WU2 O;  2JMM A;  2ERV A;  4O4X A;  5D5D A;  4PR7 A;  3PGR A;  3G7G A;  2XTR A;  4GCQ A;  2AXT O;  3JCU O;  3DZM A;  3POU A;  2M07 A;  2W81 C;  4FES A;  2KXP B;  2N2M A;  4IL6 O;  4O49 A;  4PUX A;  4AKR B;  4C00 A;  3WI5 A;  1P4T A;  2XE3 A;  3SZV A;  3BRY A;  2JQY A;  5GV0 A;  3V8U A;  4BUM X;  3AA6 A;  2R4N A;  4XNK A;  5H2F O;  2LHF A;  2MNH A;  3PQS A;  2KZ7 A;  2PRN A;  1BH3 A;  2ODJ A;  4FT6 A;  1T16 A;  4G75 A;  1Q9G A;  1PRN A;  3C5O A;  3PGS A;  5AFU K;  3NJT A;  3UPG A;  5KAF O;  1HXT A;  1T1L A;  4D5U A;  2XE1 A;  1ZHW A;  5ADX K;  1PHO A;  4FRX A;  4O3Y A;  3BRZ A;  2R4L A;  2W80 C;  1GFQ A;  3DA3 A;  4AYD C;  3AA1 B;  5JDP A;  2WJQ A;  5E79 O;  7PRN A;  1ZHT A;  3KZI O;  2YPV A;  2LFU A;  1QJ8 A;  2K4T A;  4JCH A;  5ADX L;  1THQ A;  1IZN B;  2YNK A;  1HXU A;  3AA0 A;  5PRN A;  1MM5 A;  2OMF A;  5G26 A;  5G38 A;  5IYU A;  3QRC A;  3EMN X;  3SYB A;  2Y7S A;  4RJW A;  3T24 A;  6PRN A;  2WVP A;  3TZG A;  3QRA A;  4N74 A;  4K3B A;  4LSE A;  1HXX A;  1Q9F A;  4FQE A;  3RBH A;  1ORM A;  4FRT A;  4RLC A;  2IWW A;  4KR4 A;  3T20 A;  5B66 O;  5DL6 A;  3AAA B;  4KRA A;  2Y2X A;  1E54 A;  3AA6 B;  2N2L A;  2K0L A;  4C4V A;  4D64 A;  3LK3 A;  4E1T A;  1MPF A;  2F1C X;  4QQ1 A;  2KZ7 B;  1ZHZ A;  5TIS O;  5T5F A;  2ZFG A;  1GFN A;  2MHL A;  5AFU L;  2F1V A;  5G3A A;  4G76 A;  3FYX A;  1BXW A;  3SYS A;  1S5L O;  4GF4 A;  3VZU X;  5B5E O;  1GFP A;  2J1N A;  2KDY A;  2O4V A;  4AYM C;  2M06 A;  1GFM A; 
#chains in the Genus database with same CATH homology
 3WI4 A;  5DL7 A;  3GP6 A;  2XTQ A;  3POQ A;  2Y0L A;  3AA0 B;  2GE4 A;  4AYN A;  3LK2 A;  3SY9 A;  4U9C A;  2FGQ X;  3PQU A;  1ZHX A;  2KC0 A;  4AYI D;  3HW9 A;  2ZLD A;  2XG6 A;  4LSH A;  4O4U A;  3UU2 A;  3HWB A;  3AAE A;  5DL8 A;  4GHB A;  2XE5 A;  8PRN A;  2XE2 A;  4FZN A;  5FVN A;  4D65 A;  4LSF A;  2FGR A;  3JTY A;  3AA7 A;  4E1S A;  4Z3T A;  4FUV A;  2J4U P;  3O0E A;  4LSI A;  4O3Z A;  2X27 X;  1QJP A;  3LK3 B;  4O3X B;  4RJX A;  3LK4 2;  4AKR A;  2KXP A;  3HOE A;  4AYE C;  2F1T A;  4GCP A;  4AFK A;  3POR A;  4KR8 A;  1GFM A;  4FMS A;  4AUI A;  3VZT X;  4C69 X;  3VY9 X;  1BT9 A;  3LK4 1;  4AZL A;  4FZM A;  3A2S X;  1ZHY A;  2XMX A;  3AAA A;  1OSM A;  1GFO A;  3SY7 A;  1MM4 A;  3VY8 X;  1G90 A;  3LK2 B;  4FSO A;  4F4B A;  1OPF A;  4FOZ A;  1H6S 1;  4XNL A;  3SZD A;  1QJ9 A;  2Y0H A;  4JFB A;  2Y0K A;  4O3W A;  2QTK A;  4RL9 A;  3AA1 A;  3DA4 A;  2POR A;  3HOL A;  3VE2 A;  3VE1 A;  3POX A;  5EE2 A;  1IZN A;  4AKM A;  4N59 A;  3AAE B;  3K19 A;  4FSP A;  4RLB A;  3VZW X;  4GCS A;  4N58 A;  1YS5 A;  3UAQ A;  4B61 A;  5DL5 A;  3KVD D;  4FZL A;  3T0S A;  3AA7 B;  3NSG A;  3PRN A;  2JMM A;  2ERV A;  4O4X A;  5D5D A;  3G7G A;  2XTR A;  4GCQ A;  7PRN A;  3POU A;  5IYU A;  2M07 A;  4PUX A;  4FES A;  2KXP B;  2N2M A;  4O49 A;  4AKR B;  3WI5 A;  1P4T A;  2XE3 A;  3SZV A;  5GV0 A;  3V8U A;  4BUM X;  3AA6 A;  4XNK A;  2LHF A;  2MNH A;  3PQS A;  2KZ7 A;  2PRN A;  1BH3 A;  2ODJ A;  4FT6 A;  4G75 A;  1Q9G A;  1PRN A;  3C5O A;  5AFU K;  3UPG A;  1HXT A;  4D5U A;  5ADX K;  2XE1 A;  1ZHW A;  1PHO A;  4FRX A;  4O3Y A;  4AYD C;  2W80 C;  1GFQ A;  3DA3 A;  5JDP A;  3AA1 B;  1ZHT A;  2YPV A;  2LFU A;  1QJ8 A;  2K4T A;  4JCH A;  5ADX L;  1THQ A;  1IZN B;  2YNK A;  1HXU A;  3AA0 A;  5PRN A;  1MM5 A;  2OMF A;  5G26 A;  3QRC A;  3EMN X;  3SYB A;  2Y7S A;  4RJW A;  3T24 A;  6PRN A;  3TZG A;  3QRA A;  4LSE A;  1HXX A;  1Q9F A;  3RBH A;  1ORM A;  4FRT A;  4RLC A;  4KR4 A;  3T20 A;  5DL6 A;  3AAA B;  4KRA A;  2Y2X A;  1E54 A;  3AA6 B;  2N2L A;  2K0L A;  4E1T A;  4D64 A;  3LK3 A;  1MPF A;  4QQ1 A;  2KZ7 B;  1ZHZ A;  5T5F A;  2ZFG A;  1GFN A;  2MHL A;  5AFU L;  2F1V A;  4G76 A;  3FYX A;  1BXW A;  3SYS A;  4GF4 A;  3VZU X;  1GFP A;  2J1N A;  2KDY A;  2O4V A;  4AYM C;  2M06 A;  2W81 C; 
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