4BUM | Genus

Total Genus 63

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	63
sequence length	283
structure length	283
Chain Sequence	MAVPPAYADLGKSAKDIFNKGYGFGMVKLDVKTKSASGVEFKTSGSSNTDTSKVVGSLETKYKRSEYGLTFTEKWNTDNTLGTEINIEDQIAKGLKLTFDTTFSPNTGKKSGKVKTAYKREFVNLGCDVDFDFAGPTIHGAAVVGYEGWLAGYQMSFDTAKSKMTQNNFAVGYKTGDFQLHTNVNDGSEFGGSIYQKVSDKLETAVNLAWTAGSNSTRFGIAAKYQLDKDASISAKVNNTSLVGVGYTQSLRPGIKLTLSALVDGKSINSGGHKLGLGLELEA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Membrane protein
source organism	Danio rerio
publication title	High-Resolution Structure and Double Electron-Electron Resonance of the Zebrafish Voltage Dependent Anion Channel 2 Reveal an Oligomeric Population. pubmed doi rcsb
molecule keywords	VOLTAGE-DEPENDENT ANION CHANNEL 2
total genus	63
structure length	283
sequence length	283
ec nomenclature
pdb deposition date	2013-06-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
X	PF01459	Porin_3	Eukaryotic porin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	4bumX00

1GFMA 3A2SX 4KRAA 4FMSA 3WI4A 1BH3A 1BT9A 1OSMA 2Y0KA 3JTYA 4LSHA 3SY9A 3VZTX 4LSEA 1GFOA 4FOZA 4KR8A 4FSPA 3K19A 2O4VA 3WI5A 3PORA 4GCQA 3SYSA 3HWBA 5DL5A 2ZFGA 1GFQA 4KR4A 3VY8X 3POUA 3VZUX 4JFBA 3FYXA 4RJXA 3SZDA 8PRNA 2J1NA 3UU2A 2QTKA 2ZLDA 3SZVA 4LSFA 4D64A 2FGRA 1OPFA 1GFPA 2PRNA 3O0EA 7PRNA 1H6S1 3VZWX 4BUMX 3UPGA 1GFNA 5DL7A 2Y0LA 4GCSA 3T0SA 4RJWA 4FRXA 4D5UA 3T20A 3POQA 1PRNA 6PRNA 4AUIA 1PHOA 2XE3A 2Y2XA 4FRTA 3POXA 3VY9X 4D65A 2K4TA 2XG6A 5DL8A 1E54A 2J4UP 4C69X 4GCPA 3SY7A 3HW9A 1HXUA 2FGQX 2XE1A 4LSIA 3SYBA 2XE2A 5DL6A 1HXXA 3PRNA 2ODJA 1MPFA 2Y0HA 3NSGA 2OMFA 2PORA 2XE5A 4FSOA 4FT6A 5JDPA 1HXTA 5PRNA 3T24A 3EMNX 5FVNA
chains in the Genus database with same CATH superfamily

4N75A 1GFMA 3A2SX 4KRAA 4FMSA 3VE2A 2Y7SA 3KZIO 3V8UA 3WI4A 2F1CX 4Z3TA 3DZMA 1BH3A 4G76A 5AFUL 1ZHTA 3TZGA 1BT9A 1OSMA 3DWNA 3LK2B 2IWWA 1G90A 5D5DA 2Y0KA 4QQ1A 2LHFA 2W81C 3AAEA 3BS0A 2XTQA 3JTYA 4C4VB 4O3WA 3AA6A 4LSHA 3AA1B 3LK3A 3SY9A 2WJQA 3VZTX 4K3CA 4XNLA 4LSEA 4FZMA 1GFOA 2R89A 4FOZA 5G3AA 5B66O 3GP6A 4KR8A 5GTHO 1S5LO 2N2MA 3JCUO 4FSPA 3K19A 4GHBA 2KXPB 2O4VA 4GF4A 4PUXA 3WI5A 3PORA 2WVPA 3NJTA 2X27X 4AKRB 2K0LA 2R4NA 4GCQA 1ORMA 3SYSA 3HWBA 1THQA 1QJPA 4E1TA 1YS5A 2M06A 5DL5A 2ZFGA 1GFQA 1MM5A 1IZNA 1ZHYA 3VE1A 4KR4A 2ERVA 3VY8X 3POUA 4U9CA 2X9KA 3RBHA 3VZUX 3HOEA 4JFBA 3DA4A 3FYXA 4B61A 4RJXA 3SZDA 2IWVA 2KZ7A 8PRNA 2J1NA 4AYNA 1ZHWA 3UU2A 1Q9FA 5GV0A 2QTKA 2ZLDA 5EE2A 2JMMA 4LSFA 2FGRA 1OPFA 2XTRA 3AA7A 4FUVA 3SZVA 4D64A 5ADXL 4AYID 1GFPA 2PRNA 3O0EA 5E79O 5G39A 7PRNA 1H6S1 3VZWX 3A0BO 4BUMX 1GFNA 4PJ0O 2Y0LA 4XNKA 5DL7A 4AZLA 3UPGA 4GCSA 2R8AA 4O49A 3LK2A 4PR7A 4FQEA 3PGUA 3T0SA 4AYEC 4N58A 4RJWA 4FESA 4FRXA 1T1LA 4D5UA 3T20A 3POQA 4UB6O 2JQYA 4C4VA 5ADXK 3AA0B 1PRNA 2MNHA 3PGSA 4O4UA 2KC0A 3AA1A 4AKMA 4AUIA 3AAAA 4AYDC 6PRNA 1PHOA 1P4TA 2R4OA 2XMXA 4O4XA 5T5FA 1QJ8A 3QRCA 4CTDA 2XE3A 4F4BA 4FZLA 2Y2XA 3C5OA 4FRTA 3PQUA 2R88A 3POXA 1BXWA 3VY9X 3HOLA 4D65A 2K4TA 2XG6A 4IL6O 2KXPA 4RL9A 5DL8A 3PGRA 3A0HO 4O3YA 5KAIO 1ZHZA 3LK42 5G38A 5KAFO 4AKRA 5H2FO 1E54A 3DA3A 2J4UP 4AFKA 2MHLA 2GE4A 3AAEB 4JCHA 3BRZA 3PQSA 4C69X 4UB8O 5B5EO 2M07A 1Q9GA 1T16A 2F1VA 3AA6B 3LK3B 3PF1A 4GCPA 5G26A 4E1SA 4O3ZA 3SY7A 4N74A 2LFUA 3HW9A 3UAQA 4O3XB 1HXUA 2FGQX 4G75A 5GTIO 3LK41 5TISO 2XE1A 4LSIA 2R4LA 2W80C 4AYMC 2N2LA 3WU2O 4RLBA 3DWOX 3SYBA 1MM4A 2YPVA 3AAAB 2XE2A 2AXTO 2R4PA 5DL6A 1HXXA 1IZNB 4N59A 4FZNA 5AFUK 5IYUA 2F1TA 2ODJA 1MPFA 3PRNA 2Y0HA 3KVDD 3NSGA 2OMFA 2PORA 2YNKA 2XE5A 3G7GA 4FSOA 4FT6A 3AA0A 4K3BA 5JDPA 2KZ7B 4RLCA 1HXTA 2KDYA 1ZHXA 1QJ9A 5PRNA 3T24A 4C00A 3EMNX 5FVNA 3QRAA 2WJRA 3AA7B 3BRYA
chains in the Genus database with same CATH topology

1GFMA 3A2SX 4KRAA 4FMSA 3VE2A 2Y7SA 3V8UA 3WI4A 4Z3TA 4G76A 1BH3A 5AFUL 1ZHTA 3TZGA 1BT9A 1OSMA 3LK2B 1G90A 5D5DA 2Y0KA 4QQ1A 2LHFA 2W81C 3AAEA 2XTQA 3JTYA 4O3WA 3AA6A 4LSHA 3AA1B 3LK3A 3SY9A 3VZTX 4XNLA 4LSEA 4FZMA 1GFOA 4FOZA 3GP6A 4KR8A 2N2MA 4FSPA 3K19A 4GHBA 2KXPB 2O4VA 4GF4A 4PUXA 3WI5A 3PORA 2X27X 4AKRB 2K0LA 4GCQA 1ORMA 3SYSA 3HWBA 1THQA 1QJPA 4E1TA 1YS5A 2M06A 5DL5A 2ZFGA 1GFQA 1MM5A 1IZNA 1ZHYA 3VE1A 4KR4A 2ERVA 3VY8X 3POUA 4U9CA 3RBHA 3VZUX 3HOEA 4JFBA 3DA4A 3FYXA 4B61A 4RJXA 3SZDA 2KZ7A 8PRNA 2J1NA 4AYNA 1ZHWA 3UU2A 1Q9FA 5GV0A 2QTKA 2ZLDA 5EE2A 2JMMA 4LSFA 2FGRA 1OPFA 2XTRA 3AA7A 4FUVA 3SZVA 4D64A 5ADXL 4AYID 1GFPA 2PRNA 3O0EA 7PRNA 1H6S1 3VZWX 4BUMX 3UPGA 1GFNA 4XNKA 2Y0LA 5DL7A 4AZLA 4GCSA 4O49A 3LK2A 3T0SA 4AYEC 4N58A 4RJWA 4FESA 4FRXA 4D5UA 3T20A 3POQA 5ADXK 3AA0B 1PRNA 2MNHA 4AKMA 4O4UA 2KC0A 3AA1A 4AUIA 6PRNA 3AAAA 4AYDC 1PHOA 1P4TA 2XMXA 4O4XA 5T5FA 1QJ8A 3QRCA 2XE3A 4F4BA 4FZLA 2Y2XA 3C5OA 4FRTA 3PQUA 3POXA 1BXWA 3VY9X 3HOLA 4D65A 2K4TA 2XG6A 4RL9A 2KXPA 5DL8A 4O3YA 1ZHZA 3LK42 4AKRA 1E54A 3DA3A 2J4UP 4AFKA 2MHLA 2GE4A 3AAEB 4JCHA 4C69X 3PQSA 2M07A 1Q9GA 2F1VA 3AA6B 3LK3B 4E1SA 4GCPA 5G26A 4O3ZA 3SY7A 2LFUA 3HW9A 3UAQA 4O3XB 1HXUA 2FGQX 4G75A 3LK41 2XE1A 4LSIA 2W80C 4AYMC 2N2LA 4RLBA 3SYBA 1MM4A 2YPVA 3AAAB 2XE2A 5DL6A 1HXXA 1IZNB 4N59A 4FZNA 5AFUK 5IYUA 2F1TA 2ODJA 1MPFA 3PRNA 2Y0HA 3KVDD 3NSGA 2OMFA 2PORA 2YNKA 2XE5A 3G7GA 4FSOA 4FT6A 3AA0A 5JDPA 2KZ7B 4RLCA 1HXTA 2KDYA 1ZHXA 1QJ9A 5PRNA 3T24A 3EMNX 5FVNA 3QRAA 3AA7B
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1GFM A;  3A2S X;  4KRA A;  4FMS A;  3WI4 A;  1BH3 A;  1BT9 A;  1OSM A;  2Y0K A;  3JTY A;  4LSH A;  3SY9 A;  3VZT X;  4LSE A;  1GFO A;  4FOZ A;  4KR8 A;  4FSP A;  3K19 A;  2O4V A;  3WI5 A;  3POR A;  4GCQ A;  3SYS A;  3HWB A;  5DL5 A;  2ZFG A;  1GFQ A;  4KR4 A;  3VY8 X;  3POU A;  3VZU X;  4JFB A;  3FYX A;  4RJX A;  3SZD A;  8PRN A;  2J1N A;  3UU2 A;  2QTK A;  2ZLD A;  3SZV A;  4LSF A;  4D64 A;  2FGR A;  1OPF A;  1GFP A;  2PRN A;  3O0E A;  7PRN A;  1H6S 1;  3VZW X;  4BUM X;  3UPG A;  1GFN A;  5DL7 A;  2Y0L A;  4GCS A;  3T0S A;  4RJW A;  4FRX A;  4D5U A;  3T20 A;  3POQ A;  1PRN A;  6PRN A;  4AUI A;  1PHO A;  2XE3 A;  2Y2X A;  4FRT A;  3POX A;  3VY9 X;  4D65 A;  2K4T A;  2XG6 A;  5DL8 A;  1E54 A;  2J4U P;  4C69 X;  4GCP A;  3SY7 A;  3HW9 A;  1HXU A;  2FGQ X;  2XE1 A;  4LSI A;  3SYB A;  2XE2 A;  5DL6 A;  1HXX A;  3PRN A;  2ODJ A;  1MPF A;  2Y0H A;  3NSG A;  2OMF A;  2POR A;  2XE5 A;  4FSO A;  4FT6 A;  5JDP A;  1HXT A;  5PRN A;  3T24 A;  3EMN X;  5FVN A; 
#chains in the Genus database with same CATH topology
 4N75 A;  1GFM A;  3A2S X;  4KRA A;  4FMS A;  3VE2 A;  2Y7S A;  3KZI O;  3V8U A;  3WI4 A;  2F1C X;  4Z3T A;  3DZM A;  1BH3 A;  4G76 A;  5AFU L;  1ZHT A;  3TZG A;  1BT9 A;  1OSM A;  3DWN A;  3LK2 B;  2IWW A;  1G90 A;  5D5D A;  2Y0K A;  4QQ1 A;  2LHF A;  2W81 C;  3AAE A;  3BS0 A;  2XTQ A;  3JTY A;  4C4V B;  4O3W A;  3AA6 A;  4LSH A;  3AA1 B;  3LK3 A;  3SY9 A;  2WJQ A;  3VZT X;  4K3C A;  4XNL A;  4LSE A;  4FZM A;  1GFO A;  2R89 A;  4FOZ A;  5G3A A;  5B66 O;  3GP6 A;  4KR8 A;  5GTH O;  1S5L O;  2N2M A;  3JCU O;  4FSP A;  3K19 A;  4GHB A;  2KXP B;  2O4V A;  4GF4 A;  4PUX A;  3WI5 A;  3POR A;  2WVP A;  3NJT A;  2X27 X;  4AKR B;  2K0L A;  2R4N A;  4GCQ A;  1ORM A;  3SYS A;  3HWB A;  1THQ A;  1QJP A;  4E1T A;  1YS5 A;  2M06 A;  5DL5 A;  2ZFG A;  1GFQ A;  1MM5 A;  1IZN A;  1ZHY A;  3VE1 A;  4KR4 A;  2ERV A;  3VY8 X;  3POU A;  4U9C A;  2X9K A;  3RBH A;  3VZU X;  3HOE A;  4JFB A;  3DA4 A;  3FYX A;  4B61 A;  4RJX A;  3SZD A;  2IWV A;  2KZ7 A;  8PRN A;  2J1N A;  4AYN A;  1ZHW A;  3UU2 A;  1Q9F A;  5GV0 A;  2QTK A;  2ZLD A;  5EE2 A;  2JMM A;  4LSF A;  2FGR A;  1OPF A;  2XTR A;  3AA7 A;  4FUV A;  3SZV A;  4D64 A;  5ADX L;  4AYI D;  1GFP A;  2PRN A;  3O0E A;  5E79 O;  5G39 A;  7PRN A;  1H6S 1;  3VZW X;  3A0B O;  4BUM X;  1GFN A;  4PJ0 O;  2Y0L A;  4XNK A;  5DL7 A;  4AZL A;  3UPG A;  4GCS A;  2R8A A;  4O49 A;  3LK2 A;  4PR7 A;  4FQE A;  3PGU A;  3T0S A;  4AYE C;  4N58 A;  4RJW A;  4FES A;  4FRX A;  1T1L A;  4D5U A;  3T20 A;  3POQ A;  4UB6 O;  2JQY A;  4C4V A;  5ADX K;  3AA0 B;  1PRN A;  2MNH A;  3PGS A;  4O4U A;  2KC0 A;  3AA1 A;  4AKM A;  4AUI A;  3AAA A;  4AYD C;  6PRN A;  1PHO A;  1P4T A;  2R4O A;  2XMX A;  4O4X A;  5T5F A;  1QJ8 A;  3QRC A;  4CTD A;  2XE3 A;  4F4B A;  4FZL A;  2Y2X A;  3C5O A;  4FRT A;  3PQU A;  2R88 A;  3POX A;  1BXW A;  3VY9 X;  3HOL A;  4D65 A;  2K4T A;  2XG6 A;  4IL6 O;  2KXP A;  4RL9 A;  5DL8 A;  3PGR A;  3A0H O;  4O3Y A;  5KAI O;  1ZHZ A;  3LK4 2;  5G38 A;  5KAF O;  4AKR A;  5H2F O;  1E54 A;  3DA3 A;  2J4U P;  4AFK A;  2MHL A;  2GE4 A;  3AAE B;  4JCH A;  3BRZ A;  3PQS A;  4C69 X;  4UB8 O;  5B5E O;  2M07 A;  1Q9G A;  1T16 A;  2F1V A;  3AA6 B;  3LK3 B;  3PF1 A;  4GCP A;  5G26 A;  4E1S A;  4O3Z A;  3SY7 A;  4N74 A;  2LFU A;  3HW9 A;  3UAQ A;  4O3X B;  1HXU A;  2FGQ X;  4G75 A;  5GTI O;  3LK4 1;  5TIS O;  2XE1 A;  4LSI A;  2R4L A;  2W80 C;  4AYM C;  2N2L A;  3WU2 O;  4RLB A;  3DWO X;  3SYB A;  1MM4 A;  2YPV A;  3AAA B;  2XE2 A;  2AXT O;  2R4P A;  5DL6 A;  1HXX A;  1IZN B;  4N59 A;  4FZN A;  5AFU K;  5IYU A;  2F1T A;  2ODJ A;  1MPF A;  3PRN A;  2Y0H A;  3KVD D;  3NSG A;  2OMF A;  2POR A;  2YNK A;  2XE5 A;  3G7G A;  4FSO A;  4FT6 A;  3AA0 A;  4K3B A;  5JDP A;  2KZ7 B;  4RLC A;  1HXT A;  2KDY A;  1ZHX A;  1QJ9 A;  5PRN A;  3T24 A;  4C00 A;  3EMN X;  5FVN A;  3QRA A;  2WJR A;  3AA7 B;  3BRY A; 
#chains in the Genus database with same CATH homology
 1GFM A;  3A2S X;  4KRA A;  4FMS A;  3VE2 A;  2Y7S A;  3V8U A;  3WI4 A;  4Z3T A;  4G76 A;  1BH3 A;  5AFU L;  1ZHT A;  3TZG A;  1BT9 A;  1OSM A;  3LK2 B;  1G90 A;  5D5D A;  2Y0K A;  4QQ1 A;  2LHF A;  2W81 C;  3AAE A;  2XTQ A;  3JTY A;  4O3W A;  3AA6 A;  4LSH A;  3AA1 B;  3LK3 A;  3SY9 A;  3VZT X;  4XNL A;  4LSE A;  4FZM A;  1GFO A;  4FOZ A;  3GP6 A;  4KR8 A;  2N2M A;  4FSP A;  3K19 A;  4GHB A;  2KXP B;  2O4V A;  4GF4 A;  4PUX A;  3WI5 A;  3POR A;  2X27 X;  4AKR B;  2K0L A;  4GCQ A;  1ORM A;  3SYS A;  3HWB A;  1THQ A;  1QJP A;  4E1T A;  1YS5 A;  2M06 A;  5DL5 A;  2ZFG A;  1GFQ A;  1MM5 A;  1IZN A;  1ZHY A;  3VE1 A;  4KR4 A;  2ERV A;  3VY8 X;  3POU A;  4U9C A;  3RBH A;  3VZU X;  3HOE A;  4JFB A;  3DA4 A;  3FYX A;  4B61 A;  4RJX A;  3SZD A;  2KZ7 A;  8PRN A;  2J1N A;  4AYN A;  1ZHW A;  3UU2 A;  1Q9F A;  5GV0 A;  2QTK A;  2ZLD A;  5EE2 A;  2JMM A;  4LSF A;  2FGR A;  1OPF A;  2XTR A;  3AA7 A;  4FUV A;  3SZV A;  4D64 A;  5ADX L;  4AYI D;  1GFP A;  2PRN A;  3O0E A;  7PRN A;  1H6S 1;  3VZW X;  4BUM X;  3UPG A;  1GFN A;  4XNK A;  2Y0L A;  5DL7 A;  4AZL A;  4GCS A;  4O49 A;  3LK2 A;  3T0S A;  4AYE C;  4N58 A;  4RJW A;  4FES A;  4FRX A;  4D5U A;  3T20 A;  3POQ A;  5ADX K;  3AA0 B;  1PRN A;  2MNH A;  4AKM A;  4O4U A;  2KC0 A;  3AA1 A;  4AUI A;  6PRN A;  3AAA A;  4AYD C;  1PHO A;  1P4T A;  2XMX A;  4O4X A;  5T5F A;  1QJ8 A;  3QRC A;  2XE3 A;  4F4B A;  4FZL A;  2Y2X A;  3C5O A;  4FRT A;  3PQU A;  3POX A;  1BXW A;  3VY9 X;  3HOL A;  4D65 A;  2K4T A;  2XG6 A;  4RL9 A;  2KXP A;  5DL8 A;  4O3Y A;  1ZHZ A;  3LK4 2;  4AKR A;  1E54 A;  3DA3 A;  2J4U P;  4AFK A;  2MHL A;  2GE4 A;  3AAE B;  4JCH A;  4C69 X;  3PQS A;  2M07 A;  1Q9G A;  2F1V A;  3AA6 B;  3LK3 B;  4E1S A;  4GCP A;  5G26 A;  4O3Z A;  3SY7 A;  2LFU A;  3HW9 A;  3UAQ A;  4O3X B;  1HXU A;  2FGQ X;  4G75 A;  3LK4 1;  2XE1 A;  4LSI A;  2W80 C;  4AYM C;  2N2L A;  4RLB A;  3SYB A;  1MM4 A;  2YPV A;  3AAA B;  2XE2 A;  5DL6 A;  1HXX A;  1IZN B;  4N59 A;  4FZN A;  5AFU K;  5IYU A;  2F1T A;  2ODJ A;  1MPF A;  3PRN A;  2Y0H A;  3KVD D;  3NSG A;  2OMF A;  2POR A;  2YNK A;  2XE5 A;  3G7G A;  4FSO A;  4FT6 A;  3AA0 A;  5JDP A;  2KZ7 B;  4RLC A;  1HXT A;  2KDY A;  1ZHX A;  1QJ9 A;  5PRN A;  3T24 A;  3EMN X;  5FVN A;  3QRA A;  3AA7 B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

4BUMX

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations