4FRT | Genus

Total Genus 85

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	85
sequence length	389
structure length	370
Chain Sequence	GKAGLELRNFYFNRDYRQPSQSYSEEWAQGFLLRYESGYTEGLFGLGVDALGLLGVRLDSSPERSYSTSDRRAAHDYSSLGLTAKLRVSHSTLKIGTLMPRLPVVQFNDTRLHPQTFQGGLLEVNEIDGLALQFGQLRQVKQRDSTNAEDLGITRGNKRNVSDRFDFAGGTYRWSERLSSSYHYANLEDFYRQHHLGVQHLLPLADDQSLKSDIRWARSTDEGRVNNRALNALFTYRLGGHAFGLGYQRMSGDSGFAYLAGTDPYLVNFVQIGDFANKDERSWQLRYDYDFAAIGLPGLTFMSRYLRGEHIDLLDGGGRGKEWERDTDIAYLVGPLKNLGIKLRNGTFRSDFGNDIDETRLIVSYALPLW

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
source organism	Pseudomonas aeruginosa
publication title	Crystal Structures of OccK Subfamily Proteins rcsb
molecule keywords	Probable porin
total genus	85
structure length	370
sequence length	389
chains with identical sequence	B
ec nomenclature
pdb deposition date	2012-06-26

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	4frtA00

3VZUX 4JFBA 3WI5A 3T0SA 2XE3A 2Y2XA 2FGRA 2ODJA 2QTKA 3HWBA 2K4TA 3FYXA 4KR4A 3SYBA 3JTYA 3O0EA 5PRNA 4D64A 3SY7A 1GFMA 2ZLDA 5DL7A 5FVNA 2XG6A 3POXA 1OPFA 4FT6A 4LSEA 1E54A 2ZFGA 3VY9X 1H6S1 8PRNA 4GCSA 3HW9A 3PRNA 3VY8X 2PORA 1PHOA 5DL6A 2XE5A 4GCQA 3SYSA 1GFPA 4LSFA 5DL5A 2XE2A 4BUMX 1GFQA 2Y0LA 4KRAA 1GFNA 3SZVA 3A2SX 2J4UP 6PRNA 3T24A 4C69X 5JDPA 3POQA 3VZWX 4LSIA 1HXUA 4FRXA 4AUIA 4FSPA 4RJWA 7PRNA 4KR8A 3WI4A 2O4VA 3UU2A 1HXXA 2OMFA 2PRNA 4D65A 3UPGA 2Y0HA 3EMNX 1OSMA 2Y0KA 3VZTX 3T20A 4FRTA 2J1NA 1HXTA 3PORA 4D5UA 4GCPA 1MPFA 1GFOA 3POUA 4LSHA 4RJXA 3K19A 4FMSA 1BT9A 1PRNA 5DL8A 4FOZA 3SY9A 3NSGA 2FGQX 1BH3A 3SZDA 4FSOA 2XE1A
chains in the Genus database with same CATH superfamily

4FZLA 2IWWA 5AFUK 1ZHYA 5G38A 2ERVA 4FUVA 4AFKA 3BRYA 5GTIO 2AXTO 3VZUX 3PF1A 2K0LA 4JFBA 2XMXA 4O4UA 3AAEB 1BXWA 2N2LA 3HOEA 3WI5A 3AA1A 3T0SA 1ZHWA 2XE3A 2Y2XA 1P4TA 4O3ZA 3RBHA 2FGRA 2ODJA 5G3AA 2XTRA 4AYEC 1MM4A 3KZIO 2QTKA 2W80C 4FZNA 5IYUA 3PQSA 4N75A 3DZMA 2IWVA 1YS5A 3HWBA 2KXPA 5ADXL 4N58A 4AKMA 2KDYA 2F1VA 3LK2B 2K4TA 5E79O 3AA6A 4F4BA 3FYXA 4KR4A 2R4OA 2F1TA 3JTYA 2N2MA 3DA4A 3O0EA 4PUXA 4PR7A 3SYBA 3PGSA 1Q9GA 4JCHA 3AAAB 3DA3A 3QRAA 5PRNA 3SY7A 2WJRA 4D64A 1GFMA 2ZLDA 5DL7A 5FVNA 1T16A 5GV0A 2X9KA 3BRZA 3PQUA 2XG6A 3POXA 1OPFA 4FT6A 2MHLA 4LSEA 4O3YA 5TISO 3DWOX 2KC0A 1E54A 2ZFGA 3G7GA 3VY9X 1H6S1 2WJQA 5AFUL 8PRNA 3AA1B 4CTDA 4GCSA 5H2FO 3HW9A 2XTQA 3PRNA 3VY8X 2PORA 1PHOA 2X27X 4GF4A 5DL6A 2YNKA 3TZGA 2XE5A 5KAIO 4GCQA 4C4VA 4E1TA 1IZNA 4O3WA 3BS0A 1ZHZA 2KXPB 3KVDD 4QQ1A 3SYSA 2R89A 2R88A 4RLBA 4U9CA 3AA0A 4AYID 3AA6B 5G26A 4GHBA 1GFPA 4LSFA 4XNLA 2Y7SA 1THQA 2M06A 5DL5A 2XE2A 1G90A 4BUMX 1GFQA 3JCUO 2Y0LA 3GP6A 1GFNA 4FQEA 3A2SX 4KRAA 4N74A 4RL9A 3SZVA 4AYNA 3LK42 3T24A 6PRNA 2J4UP 4C69X 5GTHO 3A0HO 4K3BA 1QJPA 4AYDC 5JDPA 3NJTA 3POQA 5B5EO 3VZWX 2LFUA 1S5LO 4LSIA 4UB6O 1HXUA 3VE2A 4FRXA 4AUIA 4C00A 2R4NA 3VE1A 1T1LA 4FESA 2MNHA 4FSPA 4RJWA 7PRNA 5KAFO 4KR8A 3WI4A 4C4VB 1IZNB 2O4VA 3AA7A 3UU2A 2JMMA 1HXXA 4Z3TA 3AA0B 4AKRA 2OMFA 2JQYA 3LK3A 3LK2A 2PRNA 4D65A 3UPGA 3A0BO 2KZ7A 2Y0HA 1OSMA 2Y0KA 2M07A 3EMNX 4O3XB 4UB8O 1Q9FA 1ZHXA 2R4LA 3PGUA 2J1NA 4FRTA 4IL6O 2R4PA 1HXTA 3PORA 3AAAA 3VZTX 2WVPA 4G75A 4D5UA 3T20A 4GCPA 2GE4A 4XNKA 1MPFA 1GFOA 3POUA 4K3CA 5G39A 3HOLA 4LSHA 5B66O 1QJ8A 4RJXA 3AAEA 3QRCA 2W81C 4AYMC 1QJ9A 3K19A 4N59A 3PGRA 1BT9A 4FMSA 5T5FA 4B61A 5EE2A 5ADXK 2R8AA 2F1CX 3AA7B 1MM5A 1PRNA 2LHFA 4FOZA 5DL8A 3SY9A 5D5DA 4AKRB 3NSGA 3LK3B 2FGQX 3V8UA 4E1SA 1BH3A 2KZ7B 4O49A 3C5OA 4PJ0O 2YPVA 3DWNA 3LK41 4FZMA 4RLCA 3SZDA 3UAQA 4AZLA 4O4XA 4FSOA 2XE1A 3WU2O 1ZHTA 4G76A 1ORMA
chains in the Genus database with same CATH topology

4FZLA 5AFUK 1ZHYA 2ERVA 4FUVA 4AFKA 3VZUX 2K0LA 4JFBA 2XMXA 4O4UA 3AAEB 1BXWA 2N2LA 3HOEA 3WI5A 3AA1A 3T0SA 1ZHWA 2XE3A 2Y2XA 1P4TA 4O3ZA 3RBHA 2FGRA 2ODJA 4AYEC 2XTRA 1MM4A 2QTKA 2W80C 4FZNA 5IYUA 3PQSA 1YS5A 3HWBA 2KXPA 5ADXL 4N58A 2KDYA 2F1VA 3LK2B 2K4TA 4F4BA 3AA6A 3FYXA 4KR4A 2F1TA 3JTYA 2N2MA 3DA4A 3O0EA 4PUXA 3SYBA 1Q9GA 4JCHA 3AAAB 3DA3A 3QRAA 5PRNA 3SY7A 4D64A 1GFMA 2ZLDA 5DL7A 5FVNA 5GV0A 3PQUA 2XG6A 3POXA 1OPFA 4FT6A 2MHLA 4LSEA 4O3YA 2KC0A 1E54A 2ZFGA 3G7GA 3VY9X 1H6S1 5AFUL 8PRNA 3AA1B 4GCSA 3HW9A 2XTQA 3PRNA 3VY8X 2PORA 1PHOA 2X27X 4GF4A 5DL6A 2YNKA 3TZGA 2XE5A 4GCQA 4E1TA 1IZNA 4O3WA 1ZHZA 2KXPB 3KVDD 4QQ1A 3SYSA 4RLBA 4U9CA 3AA0A 4AYID 3AA6B 5G26A 4GHBA 1GFPA 4LSFA 4XNLA 2Y7SA 1THQA 2M06A 5DL5A 2XE2A 1G90A 4BUMX 1GFQA 2Y0LA 3GP6A 1GFNA 4KRAA 3A2SX 4RL9A 3SZVA 4AYNA 6PRNA 2J4UP 3LK42 3T24A 4C69X 4AYDC 1QJPA 5JDPA 3POQA 3VZWX 2LFUA 4LSIA 3VE2A 1HXUA 4FRXA 4AUIA 3VE1A 4FESA 2MNHA 4FSPA 4RJWA 7PRNA 4KR8A 3WI4A 1IZNB 2O4VA 3AA7A 3UU2A 2JMMA 1HXXA 4Z3TA 3AA0B 4AKRA 2OMFA 3LK3A 3LK2A 2PRNA 4D65A 3UPGA 2KZ7A 2Y0HA 1OSMA 2Y0KA 2M07A 3EMNX 4O3XB 3VZTX 1Q9FA 1ZHXA 4AKMA 4FRTA 2J1NA 3T20A 1HXTA 3PORA 3AAAA 4G75A 4D5UA 4GCPA 2GE4A 4XNKA 1MPFA 1GFOA 3POUA 3HOLA 4LSHA 1QJ8A 4RJXA 3AAEA 3QRCA 2W81C 4AYMC 1QJ9A 3K19A 4N59A 4FMSA 1BT9A 5T5FA 4B61A 5EE2A 5ADXK 3AA7B 1MM5A 1PRNA 2LHFA 4FOZA 5DL8A 3SY9A 5D5DA 4AKRB 3NSGA 3LK3B 2FGQX 3V8UA 4E1SA 1BH3A 2KZ7B 4O49A 3C5OA 2YPVA 3LK41 4FZMA 4RLCA 3SZDA 3UAQA 4AZLA 4O4XA 4FSOA 2XE1A 1ZHTA 4G76A 1ORMA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3VZU X;  4JFB A;  3WI5 A;  3T0S A;  2XE3 A;  2Y2X A;  2FGR A;  2ODJ A;  2QTK A;  3HWB A;  2K4T A;  3FYX A;  4KR4 A;  3SYB A;  3JTY A;  3O0E A;  5PRN A;  4D64 A;  3SY7 A;  1GFM A;  2ZLD A;  5DL7 A;  5FVN A;  2XG6 A;  3POX A;  1OPF A;  4FT6 A;  4LSE A;  1E54 A;  2ZFG A;  3VY9 X;  1H6S 1;  8PRN A;  4GCS A;  3HW9 A;  3PRN A;  3VY8 X;  2POR A;  1PHO A;  5DL6 A;  2XE5 A;  4GCQ A;  3SYS A;  1GFP A;  4LSF A;  5DL5 A;  2XE2 A;  4BUM X;  1GFQ A;  2Y0L A;  4KRA A;  1GFN A;  3SZV A;  3A2S X;  2J4U P;  6PRN A;  3T24 A;  4C69 X;  5JDP A;  3POQ A;  3VZW X;  4LSI A;  1HXU A;  4FRX A;  4AUI A;  4FSP A;  4RJW A;  7PRN A;  4KR8 A;  3WI4 A;  2O4V A;  3UU2 A;  1HXX A;  2OMF A;  2PRN A;  4D65 A;  3UPG A;  2Y0H A;  3EMN X;  1OSM A;  2Y0K A;  3VZT X;  3T20 A;  4FRT A;  2J1N A;  1HXT A;  3POR A;  4D5U A;  4GCP A;  1MPF A;  1GFO A;  3POU A;  4LSH A;  4RJX A;  3K19 A;  4FMS A;  1BT9 A;  1PRN A;  5DL8 A;  4FOZ A;  3SY9 A;  3NSG A;  2FGQ X;  1BH3 A;  3SZD A;  4FSO A;  2XE1 A; 
#chains in the Genus database with same CATH topology
 4FZL A;  2IWW A;  5AFU K;  1ZHY A;  5G38 A;  2ERV A;  4FUV A;  4AFK A;  3BRY A;  5GTI O;  2AXT O;  3VZU X;  3PF1 A;  2K0L A;  4JFB A;  2XMX A;  4O4U A;  3AAE B;  1BXW A;  2N2L A;  3HOE A;  3WI5 A;  3AA1 A;  3T0S A;  1ZHW A;  2XE3 A;  2Y2X A;  1P4T A;  4O3Z A;  3RBH A;  2FGR A;  2ODJ A;  5G3A A;  2XTR A;  4AYE C;  1MM4 A;  3KZI O;  2QTK A;  2W80 C;  4FZN A;  5IYU A;  3PQS A;  4N75 A;  3DZM A;  2IWV A;  1YS5 A;  3HWB A;  2KXP A;  5ADX L;  4N58 A;  4AKM A;  2KDY A;  2F1V A;  3LK2 B;  2K4T A;  5E79 O;  3AA6 A;  4F4B A;  3FYX A;  4KR4 A;  2R4O A;  2F1T A;  3JTY A;  2N2M A;  3DA4 A;  3O0E A;  4PUX A;  4PR7 A;  3SYB A;  3PGS A;  1Q9G A;  4JCH A;  3AAA B;  3DA3 A;  3QRA A;  5PRN A;  3SY7 A;  2WJR A;  4D64 A;  1GFM A;  2ZLD A;  5DL7 A;  5FVN A;  1T16 A;  5GV0 A;  2X9K A;  3BRZ A;  3PQU A;  2XG6 A;  3POX A;  1OPF A;  4FT6 A;  2MHL A;  4LSE A;  4O3Y A;  5TIS O;  3DWO X;  2KC0 A;  1E54 A;  2ZFG A;  3G7G A;  3VY9 X;  1H6S 1;  2WJQ A;  5AFU L;  8PRN A;  3AA1 B;  4CTD A;  4GCS A;  5H2F O;  3HW9 A;  2XTQ A;  3PRN A;  3VY8 X;  2POR A;  1PHO A;  2X27 X;  4GF4 A;  5DL6 A;  2YNK A;  3TZG A;  2XE5 A;  5KAI O;  4GCQ A;  4C4V A;  4E1T A;  1IZN A;  4O3W A;  3BS0 A;  1ZHZ A;  2KXP B;  3KVD D;  4QQ1 A;  3SYS A;  2R89 A;  2R88 A;  4RLB A;  4U9C A;  3AA0 A;  4AYI D;  3AA6 B;  5G26 A;  4GHB A;  1GFP A;  4LSF A;  4XNL A;  2Y7S A;  1THQ A;  2M06 A;  5DL5 A;  2XE2 A;  1G90 A;  4BUM X;  1GFQ A;  3JCU O;  2Y0L A;  3GP6 A;  1GFN A;  4FQE A;  3A2S X;  4KRA A;  4N74 A;  4RL9 A;  3SZV A;  4AYN A;  3LK4 2;  3T24 A;  6PRN A;  2J4U P;  4C69 X;  5GTH O;  3A0H O;  4K3B A;  1QJP A;  4AYD C;  5JDP A;  3NJT A;  3POQ A;  5B5E O;  3VZW X;  2LFU A;  1S5L O;  4LSI A;  4UB6 O;  1HXU A;  3VE2 A;  4FRX A;  4AUI A;  4C00 A;  2R4N A;  3VE1 A;  1T1L A;  4FES A;  2MNH A;  4FSP A;  4RJW A;  7PRN A;  5KAF O;  4KR8 A;  3WI4 A;  4C4V B;  1IZN B;  2O4V A;  3AA7 A;  3UU2 A;  2JMM A;  1HXX A;  4Z3T A;  3AA0 B;  4AKR A;  2OMF A;  2JQY A;  3LK3 A;  3LK2 A;  2PRN A;  4D65 A;  3UPG A;  3A0B O;  2KZ7 A;  2Y0H A;  1OSM A;  2Y0K A;  2M07 A;  3EMN X;  4O3X B;  4UB8 O;  1Q9F A;  1ZHX A;  2R4L A;  3PGU A;  2J1N A;  4FRT A;  4IL6 O;  2R4P A;  1HXT A;  3POR A;  3AAA A;  3VZT X;  2WVP A;  4G75 A;  4D5U A;  3T20 A;  4GCP A;  2GE4 A;  4XNK A;  1MPF A;  1GFO A;  3POU A;  4K3C A;  5G39 A;  3HOL A;  4LSH A;  5B66 O;  1QJ8 A;  4RJX A;  3AAE A;  3QRC A;  2W81 C;  4AYM C;  1QJ9 A;  3K19 A;  4N59 A;  3PGR A;  1BT9 A;  4FMS A;  5T5F A;  4B61 A;  5EE2 A;  5ADX K;  2R8A A;  2F1C X;  3AA7 B;  1MM5 A;  1PRN A;  2LHF A;  4FOZ A;  5DL8 A;  3SY9 A;  5D5D A;  4AKR B;  3NSG A;  3LK3 B;  2FGQ X;  3V8U A;  4E1S A;  1BH3 A;  2KZ7 B;  4O49 A;  3C5O A;  4PJ0 O;  2YPV A;  3DWN A;  3LK4 1;  4FZM A;  4RLC A;  3SZD A;  3UAQ A;  4AZL A;  4O4X A;  4FSO A;  2XE1 A;  3WU2 O;  1ZHT A;  4G76 A;  1ORM A; 
#chains in the Genus database with same CATH homology
 4FZL A;  5AFU K;  1ZHY A;  2ERV A;  4FUV A;  4AFK A;  3VZU X;  2K0L A;  4JFB A;  2XMX A;  4O4U A;  3AAE B;  1BXW A;  2N2L A;  3HOE A;  3WI5 A;  3AA1 A;  3T0S A;  1ZHW A;  2XE3 A;  2Y2X A;  1P4T A;  4O3Z A;  3RBH A;  2FGR A;  2ODJ A;  4AYE C;  2XTR A;  1MM4 A;  2QTK A;  2W80 C;  4FZN A;  5IYU A;  3PQS A;  1YS5 A;  3HWB A;  2KXP A;  5ADX L;  4N58 A;  2KDY A;  2F1V A;  3LK2 B;  2K4T A;  4F4B A;  3AA6 A;  3FYX A;  4KR4 A;  2F1T A;  3JTY A;  2N2M A;  3DA4 A;  3O0E A;  4PUX A;  3SYB A;  1Q9G A;  4JCH A;  3AAA B;  3DA3 A;  3QRA A;  5PRN A;  3SY7 A;  4D64 A;  1GFM A;  2ZLD A;  5DL7 A;  5FVN A;  5GV0 A;  3PQU A;  2XG6 A;  3POX A;  1OPF A;  4FT6 A;  2MHL A;  4LSE A;  4O3Y A;  2KC0 A;  1E54 A;  2ZFG A;  3G7G A;  3VY9 X;  1H6S 1;  5AFU L;  8PRN A;  3AA1 B;  4GCS A;  3HW9 A;  2XTQ A;  3PRN A;  3VY8 X;  2POR A;  1PHO A;  2X27 X;  4GF4 A;  5DL6 A;  2YNK A;  3TZG A;  2XE5 A;  4GCQ A;  4E1T A;  1IZN A;  4O3W A;  1ZHZ A;  2KXP B;  3KVD D;  4QQ1 A;  3SYS A;  4RLB A;  4U9C A;  3AA0 A;  4AYI D;  3AA6 B;  5G26 A;  4GHB A;  1GFP A;  4LSF A;  4XNL A;  2Y7S A;  1THQ A;  2M06 A;  5DL5 A;  2XE2 A;  1G90 A;  4BUM X;  1GFQ A;  2Y0L A;  3GP6 A;  1GFN A;  4KRA A;  3A2S X;  4RL9 A;  3SZV A;  4AYN A;  6PRN A;  2J4U P;  3LK4 2;  3T24 A;  4C69 X;  4AYD C;  1QJP A;  5JDP A;  3POQ A;  3VZW X;  2LFU A;  4LSI A;  3VE2 A;  1HXU A;  4FRX A;  4AUI A;  3VE1 A;  4FES A;  2MNH A;  4FSP A;  4RJW A;  7PRN A;  4KR8 A;  3WI4 A;  1IZN B;  2O4V A;  3AA7 A;  3UU2 A;  2JMM A;  1HXX A;  4Z3T A;  3AA0 B;  4AKR A;  2OMF A;  3LK3 A;  3LK2 A;  2PRN A;  4D65 A;  3UPG A;  2KZ7 A;  2Y0H A;  1OSM A;  2Y0K A;  2M07 A;  3EMN X;  4O3X B;  3VZT X;  1Q9F A;  1ZHX A;  4AKM A;  4FRT A;  2J1N A;  3T20 A;  1HXT A;  3POR A;  3AAA A;  4G75 A;  4D5U A;  4GCP A;  2GE4 A;  4XNK A;  1MPF A;  1GFO A;  3POU A;  3HOL A;  4LSH A;  1QJ8 A;  4RJX A;  3AAE A;  3QRC A;  2W81 C;  4AYM C;  1QJ9 A;  3K19 A;  4N59 A;  4FMS A;  1BT9 A;  5T5F A;  4B61 A;  5EE2 A;  5ADX K;  3AA7 B;  1MM5 A;  1PRN A;  2LHF A;  4FOZ A;  5DL8 A;  3SY9 A;  5D5D A;  4AKR B;  3NSG A;  3LK3 B;  2FGQ X;  3V8U A;  4E1S A;  1BH3 A;  2KZ7 B;  4O49 A;  3C5O A;  2YPV A;  3LK4 1;  4FZM A;  4RLC A;  3SZD A;  3UAQ A;  4AZL A;  4O4X A;  4FSO A;  2XE1 A;  1ZHT A;  4G76 A;  1ORM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4FRTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN