4FRXA

Crystal structure of pseudomonas aeruginosa occk8 (opre)
Total Genus 121
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
431
structure length
399
Chain Sequence
AGFIEDSKASLTLRNFYINTDNRSKQEEWGQGFILNYQSGFTQGTVGFGVDALGLLGVRLGTVFPLESNGEPVHDFASLGLTAKAKVSNTEFRYGTLQPKLPVVTYNDGRLLPVTFEGGQVTSTDLKDFTLVAGQLEHSKGRNSTDNRSLSIAGANGSSASSRDSNKFYYAGGDYKVNKDLTLQYYYGNLDDFYKQHFLGLIHNWQIGPGVLKTDLRAFDSSSDGKNGSRSGRADGYVSSGYYGSGVTKGEVDNRAFSGLFTYTVSGHSIGAGYQILNGDSDFPFLNRGDGEGSTAYLITDVQIGKFQRAGERTWQVRYGYDFATVGVPGLTFNTIYLSGDKIKTARGDQSEWERDISLAYVIPDGTFKGLGFTWKNASFRSGDQDENRLIVSYTLPLL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structures of OccK Subfamily Proteins
rcsb
molecule tags Transport protein
source organism Pseudomonas aeruginosa
molecule keywords Anaerobically-induced outer membrane porin OprE
total genus 121
structure length 399
sequence length 431
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4frxA01
2OMFA 1HXUA 2FGQX 3POXA 3NSGA 4LSFA 2ZFGA 4FRTA 5DL7A 4AUIA 3K19A 2XE2A 4LSIA 3T0SA 3VZWX 1GFMA 2ZLDA 3SZDA 5DL5A 4D64A 1OPFA 2PORA 1GFOA 1BH3A 4RJXA 1GFQA 2Y2XA 4FT6A 3POUA 3WI5A 3T24A 4D5UA 4LSEA 3O0EA 4GCQA 1BT9A 1H6S1 5PRNA 2ODJA 3T20A 2Y0KA 3VZTX 1HXXA 3UPGA 4FSOA 2O4VA 1MPFA 3SY9A 5JDPA 2FGRA 8PRNA 4RJWA 3WI4A 3SY7A 4FRXA 4D65A 3SYBA 3SYSA 1PHOA 1E54A 3JTYA 2XE5A 7PRNA 2J1NA 3FYXA 3HWBA 3PRNA 5FVNA 4KR4A 2XE3A 4JFBA 3PORA 3VZUX 5DL6A 4FSPA 3VY8X 1GFPA 1HXTA 3UU2A 1OSMA 3POQA 4BUMX 4KR8A 1PRNA 2J4UP 2K4TA 4LSHA 2Y0HA 4KRAA 5DL8A 2PRNA 3SZVA 4FOZA 3EMNX 3HW9A 6PRNA 2QTKA 4FMSA 4GCPA 3A2SX 4GCSA 3VY9X 1GFNA 2XG6A 2XE1A 4C69X 2Y0LA
chains in the Genus database with same CATH superfamily
2LFUA 2IWVA 2W80C 2OMFA 3PQSA 5E79O 3AA1B 4C00A 1G90A 5AFUL 1HXUA 4FQEA 1MM5A 2FGQX 3BS0A 4O4UA 3UAQA 3POXA 3NSGA 4K3CA 2WVPA 4LSFA 3BRZA 1ZHYA 4FZMA 2ZFGA 4N58A 5G38A 3DA4A 4FRTA 4FUVA 5DL7A 4AUIA 3K19A 1YS5A 2XE2A 4LSIA 3T0SA 3BRYA 2F1CX 5B5EO 2XTQA 4PR7A 1GFMA 3VZWX 2ZLDA 3PQUA 1ZHZA 3LK2B 4N59A 3PGUA 5DL5A 1OPFA 2PORA 2X27X 3LK2A 4K3BA 5G3AA 4GHBA 1BH3A 1GFOA 2YPVA 4RJXA 5KAFO 2M07A 1GFQA 2Y2XA 4FT6A 1MM4A 3AAEB 3POUA 2MHLA 3DWOX 4UB6O 4O49A 3PGRA 3WI5A 1Q9GA 3A0BO 5D5DA 3T24A 4D5UA 4LSEA 3O0EA 5GTIO 4GCQA 1BT9A 1H6S1 5PRNA 5GTHO 2ODJA 2R4LA 4E1SA 2KZ7B 2R89A 4Z3TA 4AKMA 3T20A 4O3XB 2Y0KA 4JCHA 3VZTX 4AYNA 1HXXA 3UPGA 4FSOA 4FZLA 4O4XA 2O4VA 2KDYA 4RL9A 1MPFA 3AA0A 4U9CA 4C4VB 4QQ1A 4D64A 4RLBA 3SY9A 4AYMC 4C4VA 3A0HO 3PGSA 5JDPA 4N75A 3G7GA 4FESA 2JMMA 1Q9FA 4AKRA 3VE2A 2FGRA 2KXPA 8PRNA 2R4NA 4RJWA 3WI4A 3SY7A 4FRXA 1QJ8A 5AFUK 4E1TA 4AZLA 3TZGA 5IYUA 4D65A 3SYBA 1ZHXA 3SYSA 1P4TA 3HOLA 3VE1A 3DA3A 2GE4A 1PHOA 1E54A 3HOEA 3JTYA 2XE5A 1QJPA 2N2LA 2WJRA 3DZMA 2F1VA 4PJ0O 5ADXL 4UB8O 1IZNA 4AYID 3SZDA 1ZHWA 4IL6O 7PRNA 2J1NA 2M06A 3FYXA 3HWBA 3AA0B 3PRNA 5KAIO 3QRCA 4B61A 2KC0A 3C5OA 5FVNA 3AAAA 3QRAA 4KR4A 5T5FA 2XE3A 4JFBA 3KZIO 1THQA 4RLCA 2AXTO 2MNHA 4AKRB 4F4BA 2KXPB 3PORA 3VZUX 2X9KA 5DL6A 5GV0A 5H2FO 1QJ9A 2F1TA 2R8AA 3LK41 2R4OA 3DWNA 4G76A 4AYEC 1T1LA 4GF4A 3AA7A 2K0LA 2N2MA 5G26A 4FSPA 3VY8X 1GFPA 1HXTA 3KVDD 3JCUO 4O3YA 1OSMA 3UU2A 2XMXA 3WU2O 1ORMA 3AA1A 3POQA 4FZNA 4KR8A 1PRNA 4BUMX 2J4UP 2K4TA 2XTRA 4LSHA 3LK3B 5B66O 1IZNB 2Y0HA 3LK3A 4XNKA 4KRAA 5DL8A 4PUXA 2PRNA 5TISO 3SZVA 4O3WA 3AAAB 4CTDA 2LHFA 4FOZA 1T16A 5G39A 3EMNX 3V8UA 3HW9A 2R4PA 2W81C 6PRNA 4AYDC 2QTKA 2R88A 3LK42 4FMSA 4GCPA 3AA6B 4G75A 4O3ZA 3NJTA 2ERVA 1S5LO 3A2SX 3AA6A 1BXWA 4GCSA 2Y7SA 3AAEA 4AFKA 3VY9X 5ADXK 2IWWA 3GP6A 3PF1A 4XNLA 2JQYA 3AA7B 5EE2A 1ZHTA 1GFNA 2YNKA 4N74A 2XG6A 3RBHA 2XE1A 2WJQA 4C69X 2KZ7A 2Y0LA
chains in the Genus database with same CATH topology
2LFUA 2W80C 2OMFA 3PQSA 3AA1B 1G90A 5AFUL 1HXUA 1MM5A 2FGQX 4O4UA 3UAQA 3POXA 3NSGA 4LSFA 4FZMA 1ZHYA 4N58A 2ZFGA 3DA4A 4FRTA 4FUVA 5DL7A 4AUIA 3K19A 1YS5A 2XE2A 4LSIA 3T0SA 2XTQA 3VZWX 1GFMA 2ZLDA 3PQUA 1ZHZA 3LK2B 4N59A 5DL5A 3SZDA 1OPFA 2PORA 2X27X 3LK2A 4D64A 4GHBA 1BH3A 1GFOA 2YPVA 4RJXA 2M07A 1GFQA 2Y2XA 4FT6A 1MM4A 3AAEB 3POUA 2MHLA 3WI5A 4O49A 1Q9GA 5D5DA 3T24A 4D5UA 4LSEA 3O0EA 4GCQA 1BT9A 1H6S1 5PRNA 2ODJA 4E1SA 2KZ7B 4Z3TA 4AKMA 3T20A 4O3XB 2Y0KA 4JCHA 3VZTX 4AYNA 1HXXA 3UPGA 4FSOA 4FZLA 4O4XA 2O4VA 2KDYA 4RL9A 1MPFA 3AA0A 4U9CA 4QQ1A 4RLBA 3SY9A 4AYMC 5JDPA 3G7GA 4FESA 2JMMA 1Q9FA 4AKRA 3VE2A 2FGRA 2KXPA 8PRNA 4RJWA 3WI4A 3SY7A 4FRXA 1QJ8A 5AFUK 4E1TA 4AZLA 3TZGA 5IYUA 4D65A 3SYBA 1ZHXA 3SYSA 1P4TA 3HOLA 3VE1A 3DA3A 2GE4A 1PHOA 1E54A 3HOEA 3JTYA 2XE5A 1QJPA 2N2LA 2F1VA 5ADXL 1IZNA 4AYID 1ZHWA 7PRNA 2J1NA 2M06A 3FYXA 3HWBA 3AA0B 3PRNA 4B61A 3QRCA 2KC0A 3C5OA 5FVNA 3AAAA 3QRAA 4KR4A 5T5FA 2XE3A 4JFBA 1THQA 4RLCA 2MNHA 4AKRB 4F4BA 2KXPB 3PORA 3VZUX 5DL6A 5GV0A 1QJ9A 2F1TA 3LK41 4G76A 4AYEC 4GF4A 3AA7A 2K0LA 2N2MA 5G26A 4FSPA 3VY8X 1GFPA 1HXTA 3KVDD 3UU2A 4O3YA 1OSMA 2XMXA 1ORMA 3AA1A 3POQA 4FZNA 4KR8A 1PRNA 4BUMX 2J4UP 2K4TA 2XTRA 4LSHA 3LK3B 1IZNB 2Y0HA 3LK3A 4XNKA 4KRAA 5DL8A 4PUXA 2PRNA 3SZVA 4O3WA 3AAAB 2LHFA 4FOZA 3EMNX 3V8UA 3HW9A 2W81C 6PRNA 4AYDC 2QTKA 4FMSA 3LK42 4GCPA 3AA6B 4G75A 4O3ZA 2ERVA 3AA6A 3A2SX 4AFKA 1BXWA 4GCSA 2Y7SA 3AAEA 5ADXK 3VY9X 3GP6A 4XNLA 3AA7B 5EE2A 1ZHTA 1GFNA 2YNKA 2XG6A 3RBHA 2XE1A 4C69X 2KZ7A 2Y0LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OMF A;  1HXU A;  2FGQ X;  3POX A;  3NSG A;  4LSF A;  2ZFG A;  4FRT A;  5DL7 A;  4AUI A;  3K19 A;  2XE2 A;  4LSI A;  3T0S A;  3VZW X;  1GFM A;  2ZLD A;  3SZD A;  5DL5 A;  4D64 A;  1OPF A;  2POR A;  1GFO A;  1BH3 A;  4RJX A;  1GFQ A;  2Y2X A;  4FT6 A;  3POU A;  3WI5 A;  3T24 A;  4D5U A;  4LSE A;  3O0E A;  4GCQ A;  1BT9 A;  1H6S 1;  5PRN A;  2ODJ A;  3T20 A;  2Y0K A;  3VZT X;  1HXX A;  3UPG A;  4FSO A;  2O4V A;  1MPF A;  3SY9 A;  5JDP A;  2FGR A;  8PRN A;  4RJW A;  3WI4 A;  3SY7 A;  4FRX A;  4D65 A;  3SYB A;  3SYS A;  1PHO A;  1E54 A;  3JTY A;  2XE5 A;  7PRN A;  2J1N A;  3FYX A;  3HWB A;  3PRN A;  5FVN A;  4KR4 A;  2XE3 A;  4JFB A;  3POR A;  3VZU X;  5DL6 A;  4FSP A;  3VY8 X;  1GFP A;  1HXT A;  3UU2 A;  1OSM A;  3POQ A;  4BUM X;  4KR8 A;  1PRN A;  2J4U P;  2K4T A;  4LSH A;  2Y0H A;  4KRA A;  5DL8 A;  2PRN A;  3SZV A;  4FOZ A;  3EMN X;  3HW9 A;  6PRN A;  2QTK A;  4FMS A;  4GCP A;  3A2S X;  4GCS A;  3VY9 X;  1GFN A;  2XG6 A;  2XE1 A;  4C69 X;  2Y0L A; 
#chains in the Genus database with same CATH topology
 2LFU A;  2IWV A;  2W80 C;  2OMF A;  3PQS A;  5E79 O;  3AA1 B;  4C00 A;  1G90 A;  5AFU L;  1HXU A;  4FQE A;  1MM5 A;  2FGQ X;  3BS0 A;  4O4U A;  3UAQ A;  3POX A;  3NSG A;  4K3C A;  2WVP A;  4LSF A;  3BRZ A;  1ZHY A;  4FZM A;  2ZFG A;  4N58 A;  5G38 A;  3DA4 A;  4FRT A;  4FUV A;  5DL7 A;  4AUI A;  3K19 A;  1YS5 A;  2XE2 A;  4LSI A;  3T0S A;  3BRY A;  2F1C X;  5B5E O;  2XTQ A;  4PR7 A;  1GFM A;  3VZW X;  2ZLD A;  3PQU A;  1ZHZ A;  3LK2 B;  4N59 A;  3PGU A;  5DL5 A;  1OPF A;  2POR A;  2X27 X;  3LK2 A;  4K3B A;  5G3A A;  4GHB A;  1BH3 A;  1GFO A;  2YPV A;  4RJX A;  5KAF O;  2M07 A;  1GFQ A;  2Y2X A;  4FT6 A;  1MM4 A;  3AAE B;  3POU A;  2MHL A;  3DWO X;  4UB6 O;  4O49 A;  3PGR A;  3WI5 A;  1Q9G A;  3A0B O;  5D5D A;  3T24 A;  4D5U A;  4LSE A;  3O0E A;  5GTI O;  4GCQ A;  1BT9 A;  1H6S 1;  5PRN A;  5GTH O;  2ODJ A;  2R4L A;  4E1S A;  2KZ7 B;  2R89 A;  4Z3T A;  4AKM A;  3T20 A;  4O3X B;  2Y0K A;  4JCH A;  3VZT X;  4AYN A;  1HXX A;  3UPG A;  4FSO A;  4FZL A;  4O4X A;  2O4V A;  2KDY A;  4RL9 A;  1MPF A;  3AA0 A;  4U9C A;  4C4V B;  4QQ1 A;  4D64 A;  4RLB A;  3SY9 A;  4AYM C;  4C4V A;  3A0H O;  3PGS A;  5JDP A;  4N75 A;  3G7G A;  4FES A;  2JMM A;  1Q9F A;  4AKR A;  3VE2 A;  2FGR A;  2KXP A;  8PRN A;  2R4N A;  4RJW A;  3WI4 A;  3SY7 A;  4FRX A;  1QJ8 A;  5AFU K;  4E1T A;  4AZL A;  3TZG A;  5IYU A;  4D65 A;  3SYB A;  1ZHX A;  3SYS A;  1P4T A;  3HOL A;  3VE1 A;  3DA3 A;  2GE4 A;  1PHO A;  1E54 A;  3HOE A;  3JTY A;  2XE5 A;  1QJP A;  2N2L A;  2WJR A;  3DZM A;  2F1V A;  4PJ0 O;  5ADX L;  4UB8 O;  1IZN A;  4AYI D;  3SZD A;  1ZHW A;  4IL6 O;  7PRN A;  2J1N A;  2M06 A;  3FYX A;  3HWB A;  3AA0 B;  3PRN A;  5KAI O;  3QRC A;  4B61 A;  2KC0 A;  3C5O A;  5FVN A;  3AAA A;  3QRA A;  4KR4 A;  5T5F A;  2XE3 A;  4JFB A;  3KZI O;  1THQ A;  4RLC A;  2AXT O;  2MNH A;  4AKR B;  4F4B A;  2KXP B;  3POR A;  3VZU X;  2X9K A;  5DL6 A;  5GV0 A;  5H2F O;  1QJ9 A;  2F1T A;  2R8A A;  3LK4 1;  2R4O A;  3DWN A;  4G76 A;  4AYE C;  1T1L A;  4GF4 A;  3AA7 A;  2K0L A;  2N2M A;  5G26 A;  4FSP A;  3VY8 X;  1GFP A;  1HXT A;  3KVD D;  3JCU O;  4O3Y A;  1OSM A;  3UU2 A;  2XMX A;  3WU2 O;  1ORM A;  3AA1 A;  3POQ A;  4FZN A;  4KR8 A;  1PRN A;  4BUM X;  2J4U P;  2K4T A;  2XTR A;  4LSH A;  3LK3 B;  5B66 O;  1IZN B;  2Y0H A;  3LK3 A;  4XNK A;  4KRA A;  5DL8 A;  4PUX A;  2PRN A;  5TIS O;  3SZV A;  4O3W A;  3AAA B;  4CTD A;  2LHF A;  4FOZ A;  1T16 A;  5G39 A;  3EMN X;  3V8U A;  3HW9 A;  2R4P A;  2W81 C;  6PRN A;  4AYD C;  2QTK A;  2R88 A;  3LK4 2;  4FMS A;  4GCP A;  3AA6 B;  4G75 A;  4O3Z A;  3NJT A;  2ERV A;  1S5L O;  3A2S X;  3AA6 A;  1BXW A;  4GCS A;  2Y7S A;  3AAE A;  4AFK A;  3VY9 X;  5ADX K;  2IWW A;  3GP6 A;  3PF1 A;  4XNL A;  2JQY A;  3AA7 B;  5EE2 A;  1ZHT A;  1GFN A;  2YNK A;  4N74 A;  2XG6 A;  3RBH A;  2XE1 A;  2WJQ A;  4C69 X;  2KZ7 A;  2Y0L A; 
#chains in the Genus database with same CATH homology
 2LFU A;  2W80 C;  2OMF A;  3PQS A;  3AA1 B;  1G90 A;  5AFU L;  1HXU A;  1MM5 A;  2FGQ X;  4O4U A;  3UAQ A;  3POX A;  3NSG A;  4LSF A;  4FZM A;  1ZHY A;  4N58 A;  2ZFG A;  3DA4 A;  4FRT A;  4FUV A;  5DL7 A;  4AUI A;  3K19 A;  1YS5 A;  2XE2 A;  4LSI A;  3T0S A;  2XTQ A;  3VZW X;  1GFM A;  2ZLD A;  3PQU A;  1ZHZ A;  3LK2 B;  4N59 A;  5DL5 A;  3SZD A;  1OPF A;  2POR A;  2X27 X;  3LK2 A;  4D64 A;  4GHB A;  1BH3 A;  1GFO A;  2YPV A;  4RJX A;  2M07 A;  1GFQ A;  2Y2X A;  4FT6 A;  1MM4 A;  3AAE B;  3POU A;  2MHL A;  3WI5 A;  4O49 A;  1Q9G A;  5D5D A;  3T24 A;  4D5U A;  4LSE A;  3O0E A;  4GCQ A;  1BT9 A;  1H6S 1;  5PRN A;  2ODJ A;  4E1S A;  2KZ7 B;  4Z3T A;  4AKM A;  3T20 A;  4O3X B;  2Y0K A;  4JCH A;  3VZT X;  4AYN A;  1HXX A;  3UPG A;  4FSO A;  4FZL A;  4O4X A;  2O4V A;  2KDY A;  4RL9 A;  1MPF A;  3AA0 A;  4U9C A;  4QQ1 A;  4RLB A;  3SY9 A;  4AYM C;  5JDP A;  3G7G A;  4FES A;  2JMM A;  1Q9F A;  4AKR A;  3VE2 A;  2FGR A;  2KXP A;  8PRN A;  4RJW A;  3WI4 A;  3SY7 A;  4FRX A;  1QJ8 A;  5AFU K;  4E1T A;  4AZL A;  3TZG A;  5IYU A;  4D65 A;  3SYB A;  1ZHX A;  3SYS A;  1P4T A;  3HOL A;  3VE1 A;  3DA3 A;  2GE4 A;  1PHO A;  1E54 A;  3HOE A;  3JTY A;  2XE5 A;  1QJP A;  2N2L A;  2F1V A;  5ADX L;  1IZN A;  4AYI D;  1ZHW A;  7PRN A;  2J1N A;  2M06 A;  3FYX A;  3HWB A;  3AA0 B;  3PRN A;  4B61 A;  3QRC A;  2KC0 A;  3C5O A;  5FVN A;  3AAA A;  3QRA A;  4KR4 A;  5T5F A;  2XE3 A;  4JFB A;  1THQ A;  4RLC A;  2MNH A;  4AKR B;  4F4B A;  2KXP B;  3POR A;  3VZU X;  5DL6 A;  5GV0 A;  1QJ9 A;  2F1T A;  3LK4 1;  4G76 A;  4AYE C;  4GF4 A;  3AA7 A;  2K0L A;  2N2M A;  5G26 A;  4FSP A;  3VY8 X;  1GFP A;  1HXT A;  3KVD D;  3UU2 A;  4O3Y A;  1OSM A;  2XMX A;  1ORM A;  3AA1 A;  3POQ A;  4FZN A;  4KR8 A;  1PRN A;  4BUM X;  2J4U P;  2K4T A;  2XTR A;  4LSH A;  3LK3 B;  1IZN B;  2Y0H A;  3LK3 A;  4XNK A;  4KRA A;  5DL8 A;  4PUX A;  2PRN A;  3SZV A;  4O3W A;  3AAA B;  2LHF A;  4FOZ A;  3EMN X;  3V8U A;  3HW9 A;  2W81 C;  6PRN A;  4AYD C;  2QTK A;  4FMS A;  3LK4 2;  4GCP A;  3AA6 B;  4G75 A;  4O3Z A;  2ERV A;  3AA6 A;  3A2S X;  4AFK A;  1BXW A;  4GCS A;  2Y7S A;  3AAE A;  5ADX K;  3VY9 X;  3GP6 A;  4XNL A;  3AA7 B;  5EE2 A;  1ZHT A;  1GFN A;  2YNK A;  2XG6 A;  3RBH A;  2XE1 A;  4C69 X;  2KZ7 A;  2Y0L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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