4FSPA

Crystal structure of pseudomonas aeruginosa occk11 (opdr)
Total Genus 100

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
100
sequence length
399
structure length
364
Chain Sequence
LYFQGLEEGFLEDSRASLALRNFYMNRDFRKSEEWAQGFLFDYRSGYTEGTLGVGLDLLGKLGVRLDYARLDATAKLRLSRSELKVGGLVPKLPTIQPNYGRLFPQVFQGALLTSGELSGLSLNLGRLTEVSSDLALFNRNRRFAGAAQADRFDLAGLDYRIAPDWTGSYHYGELEQVYAQHFLGLKGRIGIAADSLESDLRLALSRDTGGARGGRIDNRSFSGSLTYRLRNGQAFGLGYQRMSGDHGFPYLEGTDPYLVNFGQYNDFAEAGESSWQLRYDCDFAPLGVPGLSLMTRYFSGHGAKPKGADGSREWERDSDLRYVLQGGALKGLGLVWRNATYRSAFSRDIDENRLYLTYELPLF
5010015020025030035035030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV1 (2-5)TIV4 (63-88)TVIII1 (49-52)S1 (8-22)TI7 (356-359)TII'1 (100-103)S5 (103-110)TIV18 (355-358)TIV3 (21-30)EMPTYS3 (51-64)S4 (89-100)S15 (246-257)TVIII2 (123-126)TI2 (114-117)TI3 (120-123)S6 (118-119)S7 (129-136)S8 (142-152)TVIII3 (137-140)S16 (262-272)TII1 (139-142)TIV10 (170-173)TIV6 (151-161)TIV9 (168-171)S9 (163-166)TIV7 (152-162)S11 (181-191)S10 (177-178)S13 (207-219)TI6 (258-261)S12 (194-203)TIV11 (189-192)TIV14 (220-223)TII2 (203-206)TIV13 (219-222)TI5 (240-243)S14 (224-236)S18 (283-284)S17 (279-280)TII3 (280-283)TII'2 (237-240)S19 (301-311)TII5 (317-320)S21 (342-352)3H1 (313-315)TIV17 (291-294)O1 (285-287)TIV16 (287-290)TII6 (334-337)S22 (362-372)TI8 (358-361)S20 (320-330)S2 (31-47)TIV8 (167-170)TII4 (298-301)Updating...
connected with : NaN
molecule tags Transport protein
source organism Pseudomonas aeruginosa
publication title Crystal Structures of OccK Subfamily Proteins
rcsb
molecule keywords Probable porin
total genus 100
structure length 364
sequence length 399
ec nomenclature
pdb deposition date 2012-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03573 OprD outer membrane porin, OprD family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4fspA01
5DL5A 2PORA 3FYXA 2ZLDA 1GFPA 2XE3A 1HXTA 3SYBA 5DL6A 2O4VA 3K19A 4LSHA 4GCSA 2FGQX 4LSIA 3EMNX 1H6S1 2Y0KA 1GFQA 4FMSA 5PRNA 2Y0LA 3NSGA 3SY9A 4LSEA 4D64A 4GCPA 3T24A 3VY9X 1MPFA 1HXXA 3HW9A 4FSOA 4FT6A 4LSFA 5JDPA 2XE1A 3O0EA 3VY8X 1BT9A 1OSMA 3WI4A 3VZWX 1BH3A 1PRNA 4JFBA 4BUMX 2OMFA 2Y2XA 3VZTX 2XE2A 2QTKA 1HXUA 3SZVA 4GCQA 3VZUX 2K4TA 1E54A 3SY7A 5DL7A 3JTYA 3PORA 4FRXA 4KRAA 2XG6A 1PHOA 2J1NA 4D65A 2ODJA 3POQA 3T20A 8PRNA 3POUA 4FSPA 4RJXA 4RJWA 1GFMA 5FVNA 4AUIA 6PRNA 2J4UP 3HWBA 3A2SX 4FOZA 4KR8A 5DL8A 3UPGA 3SZDA 3POXA 3SYSA 1GFNA 4D5UA 2PRNA 3PRNA 2Y0HA 2FGRA 4FRTA 3T0SA 3UU2A 1GFOA 3WI5A 1OPFA 4C69X 2ZFGA 7PRNA 2XE5A 4KR4A
chains in the Genus database with same CATH superfamily
2R4PA 4K3CA 5DL5A 1QJ8A 3PQSA 4JCHA 4RLCA 1BXWA 5T5FA 3RBHA 3LK41 1ZHYA 2KZ7A 2PORA 3PF1A 3A0HO 3HOEA 5D5DA 3FYXA 2ZLDA 4O4XA 1GFPA 2XE3A 1MM5A 1HXTA 3PGUA 3SYBA 3VE1A 4E1TA 5IYUA 3AAEB 2WJRA 2X27X 4AYID 5DL6A 5B5EO 3AA0B 5H2FO 4AZLA 2F1TA 2YNKA 3A0BO 4UB8O 1T16A 2KC0A 2O4VA 3K19A 5KAIO 2Y7SA 4LSHA 3G7GA 4GCSA 4AYEC 4AYMC 2KDYA 2YPVA 2FGQX 4LSIA 3BRYA 3LK42 3EMNX 3HOLA 4PJ0O 1H6S1 2Y0KA 4PR7A 1GFQA 4FESA 3PGRA 4FMSA 1Q9GA 2XMXA 3LK2A 5PRNA 2IWVA 4AYNA 3AAAA 2Y0LA 3NSGA 1ZHXA 4RL9A 4K3BA 4LSEA 4O49A 1IZNA 3SY9A 3AA7A 4AYDC 4D64A 4GCPA 4F4BA 3T24A 3VY9X 3JCUO 1S5LO 1MPFA 1HXXA 3HW9A 4FSOA 4FT6A 4N58A 5G3AA 2JMMA 4AKRB 4O4UA 4LSFA 5JDPA 2XE1A 4CTDA 4N59A 3O0EA 3VY8X 1BT9A 1OSMA 1T1LA 1ZHTA 4E1SA 3AA6B 5G39A 2KXPB 3WI4A 3DA4A 3VZWX 1ZHWA 1BH3A 4O3ZA 4FQEA 4C4VB 3AAEA 2N2MA 1PRNA 2JQYA 2XTRA 3AA0A 4N75A 1QJ9A 2R4LA 4JFBA 4BUMX 2OMFA 2R4OA 4GHBA 2GE4A 2N2LA 2Y2XA 4G75A 2KZ7B 4UB6O 2XE2A 3VZTX 2QTKA 4U9CA 2LHFA 1HXUA 3LK3A 3SZVA 5TISO 3TZGA 4AKMA 5AFUL 3BS0A 4GCQA 4G76A 3VZUX 2K4TA 4Z3TA 1E54A 4FZLA 2M06A 2W81C 4RLBA 3DA3A 3QRAA 3SY7A 4FZNA 3AA1B 5DL7A 3DWOX 3JTYA 4XNKA 4O3YA 3PORA 4FRXA 3V8UA 5GV0A 2X9KA 4KRAA 2IWWA 1THQA 2XG6A 3KZIO 1G90A 3UAQA 3VE2A 5AFUK 2W80C 1PHOA 3KVDD 3PQUA 2WVPA 4FZMA 4AKRA 2J1NA 4D65A 2K0LA 2R8AA 2XTQA 2ODJA 3AA6A 2F1CX 4GF4A 2AXTO 5G38A 3POQA 3C5OA 4N74A 5GTIO 3T20A 5G26A 8PRNA 5ADXL 3PGSA 4C4VA 2ERVA 3POUA 4FSPA 4RJXA 4RJWA 1GFMA 5FVNA 4AUIA 2F1VA 6PRNA 2M07A 2J4UP 3DWNA 3A2SX 3HWBA 1ZHZA 4FOZA 4KR8A 3DZMA 5DL8A 2R89A 4QQ1A 4XNLA 4PUXA 1Q9FA 3UPGA 5B66O 5E79O 5ADXK 1P4TA 2WJQA 3NJTA 4AFKA 3SZDA 3POXA 2R88A 3SYSA 1GFNA 1YS5A 4B61A 4C00A 5KAFO 3AA1A 2LFUA 2PRNA 4FUVA 4D5UA 3PRNA 2Y0HA 2FGRA 4FRTA 2R4NA 3T0SA 3LK2B 3QRCA 3LK3B 3UU2A 5GTHO 2MHLA 1MM4A 3AAAB 3WU2O 2KXPA 1GFOA 1IZNB 1OPFA 3AA7B 4O3WA 3WI5A 3GP6A 4IL6O 2MNHA 4O3XB 1ORMA 5EE2A 4C69X 1QJPA 2ZFGA 7PRNA 3BRZA 2XE5A 4KR4A
chains in the Genus database with same CATH topology
5T5FA 5DL5A 1QJ8A 3PQSA 4JCHA 4RLCA 1BXWA 3RBHA 3LK41 1ZHYA 2KZ7A 2PORA 3HOEA 5D5DA 3FYXA 2ZLDA 4O4XA 1GFPA 2XE3A 1MM5A 1HXTA 3SYBA 3VE1A 4E1TA 5IYUA 3AAEB 2X27X 4AYID 5DL6A 3AA0B 4AZLA 2F1TA 2YNKA 2KC0A 2O4VA 3K19A 2Y7SA 4LSHA 3G7GA 4GCSA 4AYEC 4AYMC 2KDYA 2YPVA 2FGQX 4LSIA 3LK42 3EMNX 3HOLA 1H6S1 2Y0KA 1GFQA 4FESA 4FMSA 1Q9GA 2XMXA 3LK2A 5PRNA 4AYNA 3AAAA 2Y0LA 3NSGA 1ZHXA 4RL9A 4LSEA 4O49A 3SY9A 1IZNA 4AYDC 3AA7A 4D64A 4F4BA 4GCPA 3T24A 3VY9X 1MPFA 1HXXA 3HW9A 4FSOA 4FT6A 4N58A 2JMMA 4AKRB 4O4UA 4LSFA 5JDPA 2XE1A 4N59A 3O0EA 3VY8X 1BT9A 1OSMA 1ZHTA 4E1SA 3AA6B 2KXPB 3WI4A 3DA4A 3VZWX 1ZHWA 1BH3A 4O3ZA 3AAEA 2N2MA 1PRNA 2XTRA 3AA0A 1QJ9A 4JFBA 4BUMX 2OMFA 4GHBA 2GE4A 2N2LA 2Y2XA 4G75A 2KZ7B 3VZTX 2XE2A 2QTKA 4U9CA 2LHFA 1HXUA 3LK3A 3SZVA 3TZGA 4AKMA 5AFUL 4GCQA 4G76A 3VZUX 2K4TA 4Z3TA 1E54A 4FZLA 2M06A 2W81C 4RLBA 3DA3A 3QRAA 3SY7A 4FZNA 3AA1B 5DL7A 4XNKA 3JTYA 4O3YA 3PORA 4FRXA 3V8UA 5GV0A 4KRAA 1THQA 2XG6A 1G90A 3UAQA 3VE2A 5AFUK 2W80C 1PHOA 3KVDD 3PQUA 4FZMA 4AKRA 2J1NA 4D65A 2K0LA 2XTQA 2ODJA 3AA6A 4GF4A 3POQA 3C5OA 3T20A 5G26A 8PRNA 5ADXL 2ERVA 3POUA 4FSPA 4RJXA 4RJWA 1GFMA 5FVNA 4AUIA 2F1VA 6PRNA 2M07A 2J4UP 3A2SX 3HWBA 1ZHZA 4FOZA 4KR8A 5DL8A 4QQ1A 4XNLA 4PUXA 1Q9FA 3UPGA 5ADXK 1P4TA 4AFKA 3SZDA 3POXA 3SYSA 1GFNA 1YS5A 4B61A 3AA1A 2LFUA 2PRNA 4FUVA 4D5UA 3PRNA 2Y0HA 2FGRA 4FRTA 3T0SA 3LK2B 3QRCA 3LK3B 3UU2A 2MHLA 1MM4A 3AAAB 2KXPA 1GFOA 1IZNB 1OPFA 3AA7B 4O3WA 3WI5A 3GP6A 2MNHA 4O3XB 1ORMA 5EE2A 4C69X 1QJPA 2ZFGA 7PRNA 2XE5A 4KR4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DL5 A;  2POR A;  3FYX A;  2ZLD A;  1GFP A;  2XE3 A;  1HXT A;  3SYB A;  5DL6 A;  2O4V A;  3K19 A;  4LSH A;  4GCS A;  2FGQ X;  4LSI A;  3EMN X;  1H6S 1;  2Y0K A;  1GFQ A;  4FMS A;  5PRN A;  2Y0L A;  3NSG A;  3SY9 A;  4LSE A;  4D64 A;  4GCP A;  3T24 A;  3VY9 X;  1MPF A;  1HXX A;  3HW9 A;  4FSO A;  4FT6 A;  4LSF A;  5JDP A;  2XE1 A;  3O0E A;  3VY8 X;  1BT9 A;  1OSM A;  3WI4 A;  3VZW X;  1BH3 A;  1PRN A;  4JFB A;  4BUM X;  2OMF A;  2Y2X A;  3VZT X;  2XE2 A;  2QTK A;  1HXU A;  3SZV A;  4GCQ A;  3VZU X;  2K4T A;  1E54 A;  3SY7 A;  5DL7 A;  3JTY A;  3POR A;  4FRX A;  4KRA A;  2XG6 A;  1PHO A;  2J1N A;  4D65 A;  2ODJ A;  3POQ A;  3T20 A;  8PRN A;  3POU A;  4FSP A;  4RJX A;  4RJW A;  1GFM A;  5FVN A;  4AUI A;  6PRN A;  2J4U P;  3HWB A;  3A2S X;  4FOZ A;  4KR8 A;  5DL8 A;  3UPG A;  3SZD A;  3POX A;  3SYS A;  1GFN A;  4D5U A;  2PRN A;  3PRN A;  2Y0H A;  2FGR A;  4FRT A;  3T0S A;  3UU2 A;  1GFO A;  3WI5 A;  1OPF A;  4C69 X;  2ZFG A;  7PRN A;  2XE5 A;  4KR4 A; 
#chains in the Genus database with same CATH topology
 2R4P A;  4K3C A;  5DL5 A;  1QJ8 A;  3PQS A;  4JCH A;  4RLC A;  1BXW A;  5T5F A;  3RBH A;  3LK4 1;  1ZHY A;  2KZ7 A;  2POR A;  3PF1 A;  3A0H O;  3HOE A;  5D5D A;  3FYX A;  2ZLD A;  4O4X A;  1GFP A;  2XE3 A;  1MM5 A;  1HXT A;  3PGU A;  3SYB A;  3VE1 A;  4E1T A;  5IYU A;  3AAE B;  2WJR A;  2X27 X;  4AYI D;  5DL6 A;  5B5E O;  3AA0 B;  5H2F O;  4AZL A;  2F1T A;  2YNK A;  3A0B O;  4UB8 O;  1T16 A;  2KC0 A;  2O4V A;  3K19 A;  5KAI O;  2Y7S A;  4LSH A;  3G7G A;  4GCS A;  4AYE C;  4AYM C;  2KDY A;  2YPV A;  2FGQ X;  4LSI A;  3BRY A;  3LK4 2;  3EMN X;  3HOL A;  4PJ0 O;  1H6S 1;  2Y0K A;  4PR7 A;  1GFQ A;  4FES A;  3PGR A;  4FMS A;  1Q9G A;  2XMX A;  3LK2 A;  5PRN A;  2IWV A;  4AYN A;  3AAA A;  2Y0L A;  3NSG A;  1ZHX A;  4RL9 A;  4K3B A;  4LSE A;  4O49 A;  1IZN A;  3SY9 A;  3AA7 A;  4AYD C;  4D64 A;  4GCP A;  4F4B A;  3T24 A;  3VY9 X;  3JCU O;  1S5L O;  1MPF A;  1HXX A;  3HW9 A;  4FSO A;  4FT6 A;  4N58 A;  5G3A A;  2JMM A;  4AKR B;  4O4U A;  4LSF A;  5JDP A;  2XE1 A;  4CTD A;  4N59 A;  3O0E A;  3VY8 X;  1BT9 A;  1OSM A;  1T1L A;  1ZHT A;  4E1S A;  3AA6 B;  5G39 A;  2KXP B;  3WI4 A;  3DA4 A;  3VZW X;  1ZHW A;  1BH3 A;  4O3Z A;  4FQE A;  4C4V B;  3AAE A;  2N2M A;  1PRN A;  2JQY A;  2XTR A;  3AA0 A;  4N75 A;  1QJ9 A;  2R4L A;  4JFB A;  4BUM X;  2OMF A;  2R4O A;  4GHB A;  2GE4 A;  2N2L A;  2Y2X A;  4G75 A;  2KZ7 B;  4UB6 O;  2XE2 A;  3VZT X;  2QTK A;  4U9C A;  2LHF A;  1HXU A;  3LK3 A;  3SZV A;  5TIS O;  3TZG A;  4AKM A;  5AFU L;  3BS0 A;  4GCQ A;  4G76 A;  3VZU X;  2K4T A;  4Z3T A;  1E54 A;  4FZL A;  2M06 A;  2W81 C;  4RLB A;  3DA3 A;  3QRA A;  3SY7 A;  4FZN A;  3AA1 B;  5DL7 A;  3DWO X;  3JTY A;  4XNK A;  4O3Y A;  3POR A;  4FRX A;  3V8U A;  5GV0 A;  2X9K A;  4KRA A;  2IWW A;  1THQ A;  2XG6 A;  3KZI O;  1G90 A;  3UAQ A;  3VE2 A;  5AFU K;  2W80 C;  1PHO A;  3KVD D;  3PQU A;  2WVP A;  4FZM A;  4AKR A;  2J1N A;  4D65 A;  2K0L A;  2R8A A;  2XTQ A;  2ODJ A;  3AA6 A;  2F1C X;  4GF4 A;  2AXT O;  5G38 A;  3POQ A;  3C5O A;  4N74 A;  5GTI O;  3T20 A;  5G26 A;  8PRN A;  5ADX L;  3PGS A;  4C4V A;  2ERV A;  3POU A;  4FSP A;  4RJX A;  4RJW A;  1GFM A;  5FVN A;  4AUI A;  2F1V A;  6PRN A;  2M07 A;  2J4U P;  3DWN A;  3A2S X;  3HWB A;  1ZHZ A;  4FOZ A;  4KR8 A;  3DZM A;  5DL8 A;  2R89 A;  4QQ1 A;  4XNL A;  4PUX A;  1Q9F A;  3UPG A;  5B66 O;  5E79 O;  5ADX K;  1P4T A;  2WJQ A;  3NJT A;  4AFK A;  3SZD A;  3POX A;  2R88 A;  3SYS A;  1GFN A;  1YS5 A;  4B61 A;  4C00 A;  5KAF O;  3AA1 A;  2LFU A;  2PRN A;  4FUV A;  4D5U A;  3PRN A;  2Y0H A;  2FGR A;  4FRT A;  2R4N A;  3T0S A;  3LK2 B;  3QRC A;  3LK3 B;  3UU2 A;  5GTH O;  2MHL A;  1MM4 A;  3AAA B;  3WU2 O;  2KXP A;  1GFO A;  1IZN B;  1OPF A;  3AA7 B;  4O3W A;  3WI5 A;  3GP6 A;  4IL6 O;  2MNH A;  4O3X B;  1ORM A;  5EE2 A;  4C69 X;  1QJP A;  2ZFG A;  7PRN A;  3BRZ A;  2XE5 A;  4KR4 A; 
#chains in the Genus database with same CATH homology
 5T5F A;  5DL5 A;  1QJ8 A;  3PQS A;  4JCH A;  4RLC A;  1BXW A;  3RBH A;  3LK4 1;  1ZHY A;  2KZ7 A;  2POR A;  3HOE A;  5D5D A;  3FYX A;  2ZLD A;  4O4X A;  1GFP A;  2XE3 A;  1MM5 A;  1HXT A;  3SYB A;  3VE1 A;  4E1T A;  5IYU A;  3AAE B;  2X27 X;  4AYI D;  5DL6 A;  3AA0 B;  4AZL A;  2F1T A;  2YNK A;  2KC0 A;  2O4V A;  3K19 A;  2Y7S A;  4LSH A;  3G7G A;  4GCS A;  4AYE C;  4AYM C;  2KDY A;  2YPV A;  2FGQ X;  4LSI A;  3LK4 2;  3EMN X;  3HOL A;  1H6S 1;  2Y0K A;  1GFQ A;  4FES A;  4FMS A;  1Q9G A;  2XMX A;  3LK2 A;  5PRN A;  4AYN A;  3AAA A;  2Y0L A;  3NSG A;  1ZHX A;  4RL9 A;  4LSE A;  4O49 A;  3SY9 A;  1IZN A;  4AYD C;  3AA7 A;  4D64 A;  4F4B A;  4GCP A;  3T24 A;  3VY9 X;  1MPF A;  1HXX A;  3HW9 A;  4FSO A;  4FT6 A;  4N58 A;  2JMM A;  4AKR B;  4O4U A;  4LSF A;  5JDP A;  2XE1 A;  4N59 A;  3O0E A;  3VY8 X;  1BT9 A;  1OSM A;  1ZHT A;  4E1S A;  3AA6 B;  2KXP B;  3WI4 A;  3DA4 A;  3VZW X;  1ZHW A;  1BH3 A;  4O3Z A;  3AAE A;  2N2M A;  1PRN A;  2XTR A;  3AA0 A;  1QJ9 A;  4JFB A;  4BUM X;  2OMF A;  4GHB A;  2GE4 A;  2N2L A;  2Y2X A;  4G75 A;  2KZ7 B;  3VZT X;  2XE2 A;  2QTK A;  4U9C A;  2LHF A;  1HXU A;  3LK3 A;  3SZV A;  3TZG A;  4AKM A;  5AFU L;  4GCQ A;  4G76 A;  3VZU X;  2K4T A;  4Z3T A;  1E54 A;  4FZL A;  2M06 A;  2W81 C;  4RLB A;  3DA3 A;  3QRA A;  3SY7 A;  4FZN A;  3AA1 B;  5DL7 A;  4XNK A;  3JTY A;  4O3Y A;  3POR A;  4FRX A;  3V8U A;  5GV0 A;  4KRA A;  1THQ A;  2XG6 A;  1G90 A;  3UAQ A;  3VE2 A;  5AFU K;  2W80 C;  1PHO A;  3KVD D;  3PQU A;  4FZM A;  4AKR A;  2J1N A;  4D65 A;  2K0L A;  2XTQ A;  2ODJ A;  3AA6 A;  4GF4 A;  3POQ A;  3C5O A;  3T20 A;  5G26 A;  8PRN A;  5ADX L;  2ERV A;  3POU A;  4FSP A;  4RJX A;  4RJW A;  1GFM A;  5FVN A;  4AUI A;  2F1V A;  6PRN A;  2M07 A;  2J4U P;  3A2S X;  3HWB A;  1ZHZ A;  4FOZ A;  4KR8 A;  5DL8 A;  4QQ1 A;  4XNL A;  4PUX A;  1Q9F A;  3UPG A;  5ADX K;  1P4T A;  4AFK A;  3SZD A;  3POX A;  3SYS A;  1GFN A;  1YS5 A;  4B61 A;  3AA1 A;  2LFU A;  2PRN A;  4FUV A;  4D5U A;  3PRN A;  2Y0H A;  2FGR A;  4FRT A;  3T0S A;  3LK2 B;  3QRC A;  3LK3 B;  3UU2 A;  2MHL A;  1MM4 A;  3AAA B;  2KXP A;  1GFO A;  1IZN B;  1OPF A;  3AA7 B;  4O3W A;  3WI5 A;  3GP6 A;  2MNH A;  4O3X B;  1ORM A;  5EE2 A;  4C69 X;  1QJP A;  2ZFG A;  7PRN A;  2XE5 A;  4KR4 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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