4GCSA

Crystal structure of e. coli ompf porin in complex with ertapenem
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
333
structure length
333
Chain Sequence
GNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Binding of Antibiotics in OmpF Porin.
pubmed doi rcsb
molecule tags Membrane protein/antibiotic
source organism Escherichia coli
molecule keywords Outer membrane protein F
total genus 98
structure length 333
sequence length 333
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-07-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4gcsA00
2XG6A 5PRNA 3K19A 4RJWA 1GFOA 4FMSA 1MPFA 3WI5A 1OPFA 4FSOA 2XE1A 3SYSA 2ODJA 8PRNA 3SZDA 4D5UA 3POQA 1BT9A 3UPGA 3T24A 3VY9X 3SZVA 4KR8A 3POUA 5DL5A 6PRNA 4FSPA 1OSMA 2FGQX 1HXXA 3A2SX 4GCSA 2Y0KA 3VY8X 1GFQA 1PHOA 5DL6A 2K4TA 3EMNX 3HW9A 2PRNA 3UU2A 2XE3A 7PRNA 3HWBA 4FRTA 4LSHA 5DL7A 3T20A 2J1NA 3PRNA 3JTYA 3SYBA 3O0EA 3VZUX 1PRNA 4LSEA 2PORA 4GCPA 2XE2A 3VZTX 2ZFGA 2OMFA 4FT6A 5FVNA 2Y0HA 1BH3A 4FRXA 4KRAA 2Y2XA 3NSGA 4BUMX 4D65A 2J4UP 3SY9A 5DL8A 3VZWX 3POXA 3PORA 2O4VA 5JDPA 4AUIA 3FYXA 4LSFA 3SY7A 1HXTA 4KR4A 2XE5A 4D64A 1HXUA 2Y0LA 4RJXA 2QTKA 4GCQA 1E54A 1GFNA 2FGRA 1H6S1 3T0SA 4C69X 2ZLDA 4JFBA 4FOZA 1GFMA 1GFPA 4LSIA 3WI4A
chains in the Genus database with same CATH superfamily
1S5LO 2XG6A 5PRNA 3RBHA 4G76A 1THQA 3AAEA 3HOLA 4FZLA 3DWOX 4FUVA 3K19A 4RJWA 4XNLA 5G38A 1GFOA 4FMSA 3VE1A 4O3XB 2IWVA 3PQUA 2YPVA 2KXPA 3C5OA 4K3CA 1MPFA 4O3ZA 2R4LA 3A0BO 4O49A 4PJ0O 3KVDD 3WI5A 3AA1A 3LK42 1OPFA 4FSOA 2XE1A 4N75A 3BRYA 3SYSA 2ODJA 3PF1A 1MM5A 4AYMC 5B66O 8PRNA 3SZDA 2MHLA 4D5UA 3POQA 3DA3A 5KAIO 1BT9A 4AKRA 3NJTA 3LK2A 1MM4A 4N59A 2KXPB 2M06A 4GF4A 3T24A 3UPGA 3VY9X 2R89A 4FESA 3AA1B 3SZVA 2KZ7A 5ADXK 4KR8A 4E1TA 3POUA 2JQYA 5DL5A 6PRNA 3LK2B 4FSPA 3G7GA 5GV0A 1OSMA 2FGQX 1HXXA 4N58A 3A2SX 3BRZA 2R4PA 3TZGA 1IZNB 2F1TA 2Y0KA 4G75A 2JMMA 4GCSA 4O4XA 1GFQA 3VY8X 2WJQA 1PHOA 1ZHWA 4JCHA 3QRCA 2LFUA 2LHFA 3A0HO 3AA6A 5DL6A 1Q9FA 2K4TA 3EMNX 4AFKA 5AFUL 3HW9A 1BXWA 2PRNA 4C4VA 2X27X 4UB8O 3AAEB 3UU2A 4F4BA 5G39A 2MNHA 4UB6O 4B61A 4K3BA 2XE3A 1ZHTA 3AA6B 1ZHXA 3HWBA 4FRTA 4LSHA 7PRNA 4PUXA 1YS5A 2XMXA 5DL7A 3T20A 2KC0A 4E1SA 2J1NA 3PRNA 3JTYA 2X9KA 3AAAA 4AKRB 2GE4A 2KDYA 2W81C 2Y7SA 1QJPA 3DWNA 4XNKA 3O0EA 5G3AA 3SYBA 5GTHO 4RL9A 4FZNA 3PGUA 2AXTO 5E79O 3VZUX 5G26A 1PRNA 4LSEA 3DZMA 2KZ7B 2PORA 4GCPA 4FZMA 2XE2A 5TISO 3AA0A 3LK3A 5D5DA 3AAAB 5GTIO 2F1CX 3VZTX 4AYNA 3PGSA 2ZFGA 2N2LA 2OMFA 3DA4A 4FT6A 1Q9GA 2Y0HA 5FVNA 4AYDC 1T16A 4RLBA 5IYUA 3LK41 2K0LA 1BH3A 2XTQA 4FRXA 3GP6A 4KRAA 2Y2XA 3BS0A 3NSGA 4BUMX 4D65A 3AA0B 2J4UP 3SY9A 3AA7A 5DL8A 3VZWX 3PGRA 5B5EO 2WVPA 1ZHZA 3HOEA 3POXA 2O4VA 3PORA 4AUIA 4GHBA 4AZLA 3WI4A 5JDPA 4C4VB 4RLCA 3FYXA 2W80C 5AFUK 4LSFA 3SY7A 4IL6O 5T5FA 3KZIO 1HXTA 4KR4A 3V8UA 2R4OA 1ZHYA 1QJ8A 2XE5A 1ORMA 4AYID 3AA7B 1HXUA 2Y0LA 4RJXA 4D64A 1P4TA 2QTKA 2IWWA 5ADXL 3VE2A 2ERVA 2R4NA 2YNKA 3QRAA 4GCQA 4O3YA 4U9CA 1E54A 2R8AA 4O4UA 4AKMA 2R88A 1GFNA 1T1LA 3JCUO 2FGRA 3PQSA 1H6S1 4AYEC 5EE2A 3T0SA 4C69X 2ZLDA 2F1VA 4O3WA 2XTRA 4C00A 2N2MA 5H2FO 4FQEA 4JFBA 2WJRA 4Z3TA 4FOZA 1IZNA 1QJ9A 4N74A 4QQ1A 4CTDA 3LK3B 1G90A 1GFMA 1GFPA 5KAFO 3WU2O 4LSIA 4PR7A 3UAQA 2M07A
chains in the Genus database with same CATH topology
2XG6A 5PRNA 3RBHA 4G76A 1THQA 3AAEA 3HOLA 4FZLA 4FUVA 3K19A 4RJWA 4XNLA 1GFOA 4FMSA 3VE1A 4O3XB 3PQUA 2YPVA 2KXPA 3C5OA 4O3ZA 1MPFA 4F4BA 4O49A 3KVDD 3WI5A 3AA1A 3LK42 1OPFA 4FSOA 2XE1A 3SYSA 2ODJA 4AYMC 1MM5A 8PRNA 3SZDA 2MHLA 4D5UA 3POQA 3DA3A 1BT9A 4AKRA 3LK2A 1MM4A 4N59A 2KXPB 2M06A 4GF4A 3T24A 3UPGA 3VY9X 4FESA 3AA1B 3SZVA 2KZ7A 5ADXK 4KR8A 4E1TA 3POUA 5DL5A 6PRNA 3LK2B 4FSPA 3G7GA 5GV0A 1OSMA 2FGQX 1HXXA 4N58A 3A2SX 3TZGA 1IZNB 2F1TA 2Y0KA 4G75A 2JMMA 4GCSA 4O4XA 1GFQA 3VY8X 1PHOA 1ZHWA 4JCHA 3QRCA 2LFUA 2LHFA 3AA6A 5DL6A 1Q9FA 2K4TA 3EMNX 4AFKA 5AFUL 3HW9A 1BXWA 2PRNA 2X27X 3AAEB 3UU2A 2MNHA 4B61A 2XE3A 1ZHTA 3AA6B 1ZHXA 3HWBA 4FRTA 4LSHA 7PRNA 4PUXA 2XMXA 1YS5A 5DL7A 3T20A 2KC0A 4E1SA 2J1NA 3PRNA 3JTYA 3AAAA 4AKRB 2GE4A 2KDYA 2W81C 2Y7SA 1QJPA 4XNKA 3SYBA 3O0EA 4RL9A 4FZNA 3VZUX 5G26A 1PRNA 4LSEA 2KZ7B 2PORA 4GCPA 4FZMA 2XE2A 3AA0A 3LK3A 5D5DA 3AAAB 3VZTX 4AYNA 2ZFGA 2N2LA 2OMFA 3DA4A 4FT6A 1Q9GA 2Y0HA 5FVNA 4AYDC 4RLBA 5IYUA 3LK41 2K0LA 1BH3A 2XTQA 4FRXA 3GP6A 4KRAA 2Y2XA 3NSGA 4BUMX 4D65A 3AA0B 2J4UP 3SY9A 3AA7A 5DL8A 3VZWX 3POXA 1ZHZA 3HOEA 3PORA 2O4VA 5JDPA 4AUIA 4GHBA 4AZLA 3WI4A 4RLCA 3FYXA 2W80C 5AFUK 4LSFA 3SY7A 3V8UA 5T5FA 1HXTA 4KR4A 1ZHYA 1QJ8A 2XE5A 1ORMA 4AYID 3AA7B 1HXUA 2Y0LA 4RJXA 4D64A 1P4TA 2QTKA 5ADXL 3VE2A 2ERVA 2YNKA 3QRAA 4GCQA 4O3YA 4U9CA 1E54A 4O4UA 4AKMA 1GFNA 2FGRA 3PQSA 1H6S1 4AYEC 5EE2A 3T0SA 4C69X 2ZLDA 2F1VA 4O3WA 2XTRA 2N2MA 4JFBA 4Z3TA 4FOZA 1IZNA 1QJ9A 4QQ1A 1G90A 3LK3B 1GFMA 1GFPA 4LSIA 3UAQA 2M07A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XG6 A;  5PRN A;  3K19 A;  4RJW A;  1GFO A;  4FMS A;  1MPF A;  3WI5 A;  1OPF A;  4FSO A;  2XE1 A;  3SYS A;  2ODJ A;  8PRN A;  3SZD A;  4D5U A;  3POQ A;  1BT9 A;  3UPG A;  3T24 A;  3VY9 X;  3SZV A;  4KR8 A;  3POU A;  5DL5 A;  6PRN A;  4FSP A;  1OSM A;  2FGQ X;  1HXX A;  3A2S X;  4GCS A;  2Y0K A;  3VY8 X;  1GFQ A;  1PHO A;  5DL6 A;  2K4T A;  3EMN X;  3HW9 A;  2PRN A;  3UU2 A;  2XE3 A;  7PRN A;  3HWB A;  4FRT A;  4LSH A;  5DL7 A;  3T20 A;  2J1N A;  3PRN A;  3JTY A;  3SYB A;  3O0E A;  3VZU X;  1PRN A;  4LSE A;  2POR A;  4GCP A;  2XE2 A;  3VZT X;  2ZFG A;  2OMF A;  4FT6 A;  5FVN A;  2Y0H A;  1BH3 A;  4FRX A;  4KRA A;  2Y2X A;  3NSG A;  4BUM X;  4D65 A;  2J4U P;  3SY9 A;  5DL8 A;  3VZW X;  3POX A;  3POR A;  2O4V A;  5JDP A;  4AUI A;  3FYX A;  4LSF A;  3SY7 A;  1HXT A;  4KR4 A;  2XE5 A;  4D64 A;  1HXU A;  2Y0L A;  4RJX A;  2QTK A;  4GCQ A;  1E54 A;  1GFN A;  2FGR A;  1H6S 1;  3T0S A;  4C69 X;  2ZLD A;  4JFB A;  4FOZ A;  1GFM A;  1GFP A;  4LSI A;  3WI4 A; 
#chains in the Genus database with same CATH topology
 1S5L O;  2XG6 A;  5PRN A;  3RBH A;  4G76 A;  1THQ A;  3AAE A;  3HOL A;  4FZL A;  3DWO X;  4FUV A;  3K19 A;  4RJW A;  4XNL A;  5G38 A;  1GFO A;  4FMS A;  3VE1 A;  4O3X B;  2IWV A;  3PQU A;  2YPV A;  2KXP A;  3C5O A;  4K3C A;  1MPF A;  4O3Z A;  2R4L A;  3A0B O;  4O49 A;  4PJ0 O;  3KVD D;  3WI5 A;  3AA1 A;  3LK4 2;  1OPF A;  4FSO A;  2XE1 A;  4N75 A;  3BRY A;  3SYS A;  2ODJ A;  3PF1 A;  1MM5 A;  4AYM C;  5B66 O;  8PRN A;  3SZD A;  2MHL A;  4D5U A;  3POQ A;  3DA3 A;  5KAI O;  1BT9 A;  4AKR A;  3NJT A;  3LK2 A;  1MM4 A;  4N59 A;  2KXP B;  2M06 A;  4GF4 A;  3T24 A;  3UPG A;  3VY9 X;  2R89 A;  4FES A;  3AA1 B;  3SZV A;  2KZ7 A;  5ADX K;  4KR8 A;  4E1T A;  3POU A;  2JQY A;  5DL5 A;  6PRN A;  3LK2 B;  4FSP A;  3G7G A;  5GV0 A;  1OSM A;  2FGQ X;  1HXX A;  4N58 A;  3A2S X;  3BRZ A;  2R4P A;  3TZG A;  1IZN B;  2F1T A;  2Y0K A;  4G75 A;  2JMM A;  4GCS A;  4O4X A;  1GFQ A;  3VY8 X;  2WJQ A;  1PHO A;  1ZHW A;  4JCH A;  3QRC A;  2LFU A;  2LHF A;  3A0H O;  3AA6 A;  5DL6 A;  1Q9F A;  2K4T A;  3EMN X;  4AFK A;  5AFU L;  3HW9 A;  1BXW A;  2PRN A;  4C4V A;  2X27 X;  4UB8 O;  3AAE B;  3UU2 A;  4F4B A;  5G39 A;  2MNH A;  4UB6 O;  4B61 A;  4K3B A;  2XE3 A;  1ZHT A;  3AA6 B;  1ZHX A;  3HWB A;  4FRT A;  4LSH A;  7PRN A;  4PUX A;  1YS5 A;  2XMX A;  5DL7 A;  3T20 A;  2KC0 A;  4E1S A;  2J1N A;  3PRN A;  3JTY A;  2X9K A;  3AAA A;  4AKR B;  2GE4 A;  2KDY A;  2W81 C;  2Y7S A;  1QJP A;  3DWN A;  4XNK A;  3O0E A;  5G3A A;  3SYB A;  5GTH O;  4RL9 A;  4FZN A;  3PGU A;  2AXT O;  5E79 O;  3VZU X;  5G26 A;  1PRN A;  4LSE A;  3DZM A;  2KZ7 B;  2POR A;  4GCP A;  4FZM A;  2XE2 A;  5TIS O;  3AA0 A;  3LK3 A;  5D5D A;  3AAA B;  5GTI O;  2F1C X;  3VZT X;  4AYN A;  3PGS A;  2ZFG A;  2N2L A;  2OMF A;  3DA4 A;  4FT6 A;  1Q9G A;  2Y0H A;  5FVN A;  4AYD C;  1T16 A;  4RLB A;  5IYU A;  3LK4 1;  2K0L A;  1BH3 A;  2XTQ A;  4FRX A;  3GP6 A;  4KRA A;  2Y2X A;  3BS0 A;  3NSG A;  4BUM X;  4D65 A;  3AA0 B;  2J4U P;  3SY9 A;  3AA7 A;  5DL8 A;  3VZW X;  3PGR A;  5B5E O;  2WVP A;  1ZHZ A;  3HOE A;  3POX A;  2O4V A;  3POR A;  4AUI A;  4GHB A;  4AZL A;  3WI4 A;  5JDP A;  4C4V B;  4RLC A;  3FYX A;  2W80 C;  5AFU K;  4LSF A;  3SY7 A;  4IL6 O;  5T5F A;  3KZI O;  1HXT A;  4KR4 A;  3V8U A;  2R4O A;  1ZHY A;  1QJ8 A;  2XE5 A;  1ORM A;  4AYI D;  3AA7 B;  1HXU A;  2Y0L A;  4RJX A;  4D64 A;  1P4T A;  2QTK A;  2IWW A;  5ADX L;  3VE2 A;  2ERV A;  2R4N A;  2YNK A;  3QRA A;  4GCQ A;  4O3Y A;  4U9C A;  1E54 A;  2R8A A;  4O4U A;  4AKM A;  2R88 A;  1GFN A;  1T1L A;  3JCU O;  2FGR A;  3PQS A;  1H6S 1;  4AYE C;  5EE2 A;  3T0S A;  4C69 X;  2ZLD A;  2F1V A;  4O3W A;  2XTR A;  4C00 A;  2N2M A;  5H2F O;  4FQE A;  4JFB A;  2WJR A;  4Z3T A;  4FOZ A;  1IZN A;  1QJ9 A;  4N74 A;  4QQ1 A;  4CTD A;  3LK3 B;  1G90 A;  1GFM A;  1GFP A;  5KAF O;  3WU2 O;  4LSI A;  4PR7 A;  3UAQ A;  2M07 A; 
#chains in the Genus database with same CATH homology
 2XG6 A;  5PRN A;  3RBH A;  4G76 A;  1THQ A;  3AAE A;  3HOL A;  4FZL A;  4FUV A;  3K19 A;  4RJW A;  4XNL A;  1GFO A;  4FMS A;  3VE1 A;  4O3X B;  3PQU A;  2YPV A;  2KXP A;  3C5O A;  4O3Z A;  1MPF A;  4F4B A;  4O49 A;  3KVD D;  3WI5 A;  3AA1 A;  3LK4 2;  1OPF A;  4FSO A;  2XE1 A;  3SYS A;  2ODJ A;  4AYM C;  1MM5 A;  8PRN A;  3SZD A;  2MHL A;  4D5U A;  3POQ A;  3DA3 A;  1BT9 A;  4AKR A;  3LK2 A;  1MM4 A;  4N59 A;  2KXP B;  2M06 A;  4GF4 A;  3T24 A;  3UPG A;  3VY9 X;  4FES A;  3AA1 B;  3SZV A;  2KZ7 A;  5ADX K;  4KR8 A;  4E1T A;  3POU A;  5DL5 A;  6PRN A;  3LK2 B;  4FSP A;  3G7G A;  5GV0 A;  1OSM A;  2FGQ X;  1HXX A;  4N58 A;  3A2S X;  3TZG A;  1IZN B;  2F1T A;  2Y0K A;  4G75 A;  2JMM A;  4GCS A;  4O4X A;  1GFQ A;  3VY8 X;  1PHO A;  1ZHW A;  4JCH A;  3QRC A;  2LFU A;  2LHF A;  3AA6 A;  5DL6 A;  1Q9F A;  2K4T A;  3EMN X;  4AFK A;  5AFU L;  3HW9 A;  1BXW A;  2PRN A;  2X27 X;  3AAE B;  3UU2 A;  2MNH A;  4B61 A;  2XE3 A;  1ZHT A;  3AA6 B;  1ZHX A;  3HWB A;  4FRT A;  4LSH A;  7PRN A;  4PUX A;  2XMX A;  1YS5 A;  5DL7 A;  3T20 A;  2KC0 A;  4E1S A;  2J1N A;  3PRN A;  3JTY A;  3AAA A;  4AKR B;  2GE4 A;  2KDY A;  2W81 C;  2Y7S A;  1QJP A;  4XNK A;  3SYB A;  3O0E A;  4RL9 A;  4FZN A;  3VZU X;  5G26 A;  1PRN A;  4LSE A;  2KZ7 B;  2POR A;  4GCP A;  4FZM A;  2XE2 A;  3AA0 A;  3LK3 A;  5D5D A;  3AAA B;  3VZT X;  4AYN A;  2ZFG A;  2N2L A;  2OMF A;  3DA4 A;  4FT6 A;  1Q9G A;  2Y0H A;  5FVN A;  4AYD C;  4RLB A;  5IYU A;  3LK4 1;  2K0L A;  1BH3 A;  2XTQ A;  4FRX A;  3GP6 A;  4KRA A;  2Y2X A;  3NSG A;  4BUM X;  4D65 A;  3AA0 B;  2J4U P;  3SY9 A;  3AA7 A;  5DL8 A;  3VZW X;  3POX A;  1ZHZ A;  3HOE A;  3POR A;  2O4V A;  5JDP A;  4AUI A;  4GHB A;  4AZL A;  3WI4 A;  4RLC A;  3FYX A;  2W80 C;  5AFU K;  4LSF A;  3SY7 A;  3V8U A;  5T5F A;  1HXT A;  4KR4 A;  1ZHY A;  1QJ8 A;  2XE5 A;  1ORM A;  4AYI D;  3AA7 B;  1HXU A;  2Y0L A;  4RJX A;  4D64 A;  1P4T A;  2QTK A;  5ADX L;  3VE2 A;  2ERV A;  2YNK A;  3QRA A;  4GCQ A;  4O3Y A;  4U9C A;  1E54 A;  4O4U A;  4AKM A;  1GFN A;  2FGR A;  3PQS A;  1H6S 1;  4AYE C;  5EE2 A;  3T0S A;  4C69 X;  2ZLD A;  2F1V A;  4O3W A;  2XTR A;  2N2M A;  4JFB A;  4Z3T A;  4FOZ A;  1IZN A;  1QJ9 A;  4QQ1 A;  1G90 A;  3LK3 B;  1GFM A;  1GFP A;  4LSI A;  3UAQ A;  2M07 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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