4GCSA

Crystal structure of e. coli ompf porin in complex with ertapenem
Total Genus 98

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
333
structure length
333
Chain Sequence
GNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (36-37)TIV3 (50-53)S17 (331-339)S1 (9-24)TI1 (28-31)TIV2 (27-30)3H1 (110-112)O1 (112-114)TIV1 (25-28)TI10 (319-322)TI11 (322-325)TI2 (31-34)S4 (55-66)TI3 (52-55)TII1 (76-79)TI4 (72-75)TI5 (74-77)TIV4 (66-69)TIV5 (90-93)S5 (80-90)S6 (94-102)TII'1 (127-130)TIV7 (121-124)S7 (132-141)TI'2 (222-225)AH1 (105-109)S11 (210-222)S13 (247-263)S15 (287-304)TIV6 (115-118)TIV8 (124-127)S8 (151-158)TII2 (148-151)TVIII1 (146-149)TIV9 (141-144)S9 (172-182)3H2 (144-146)3H3 (166-168)S10 (185-195)S12 (225-242)AH2 (198-202)S14 (269-283)TI7 (243-246)S16 (307-316)TII3 (283-286)TI9 (304-307)S3 (40-52)TI6 (120-123)TIV12 (242-245)TIV10 (181-184)TI8 (265-268)Updating...
connected with : NaN
molecule tags Membrane protein/antibiotic
source organism Escherichia coli
publication title The Binding of Antibiotics in OmpF Porin.
pubmed doi rcsb
molecule keywords Outer membrane protein F
total genus 98
structure length 333
sequence length 333
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-07-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4gcsA00
4FRTA 2ZFGA 1MPFA 2PORA 1GFNA 3POQA 2FGQX 1OPFA 3WI4A 4KR4A 4FT6A 4FSOA 5DL7A 3SY7A 4LSFA 4BUMX 3VY9X 4RJWA 5FVNA 6PRNA 3O0EA 3NSGA 4C69X 1PHOA 4FRXA 4GCPA 1GFPA 3EMNX 3POUA 3VZTX 2XE1A 2J1NA 3FYXA 3SY9A 1BH3A 3VZUX 2XE2A 2Y0HA 3SYBA 1HXXA 1HXUA 1HXTA 3UPGA 4LSEA 2O4VA 3JTYA 4LSIA 3VZWX 1BT9A 4FSPA 2K4TA 3VY8X 1H6S1 3PORA 3HWBA 3SYSA 4LSHA 2PRNA 2FGRA 3A2SX 3SZVA 3T24A 2ZLDA 2XE3A 4GCQA 5DL8A 7PRNA 1GFMA 4JFBA 2Y0LA 5DL5A 8PRNA 4D65A 5DL6A 3HW9A 3T0SA 4FMSA 3SZDA 2QTKA 5PRNA 3WI5A 3T20A 2XG6A 2ODJA 2Y2XA 2OMFA 1PRNA 1E54A 1GFQA 1GFOA 3POXA 4KRAA 4D64A 4D5UA 2J4UP 5JDPA 4FOZA 3K19A 2Y0KA 4RJXA 1OSMA 3UU2A 2XE5A 4KR8A 4GCSA 4AUIA 3PRNA
chains in the Genus database with same CATH superfamily
3AA7A 4FRTA 2ZFGA 4K3BA 1MPFA 2PORA 4QQ1A 2R4OA 1GFNA 3POQA 2FGQX 1OPFA 4GF4A 3WI4A 4KR4A 4FT6A 4FSOA 5DL7A 4XNLA 3SY7A 3DA4A 4LSFA 4AYMC 4BUMX 3VY9X 3PF1A 2YPVA 3PGSA 3BS0A 4RJWA 5E79O 5FVNA 2R88A 2R4LA 1ZHZA 1ZHXA 2N2MA 2XTRA 3LK2A 3O0EA 6PRNA 5ADXK 5EE2A 3LK41 4O3WA 3NSGA 4AZLA 1YS5A 1MM5A 4C69X 1QJ8A 4AYID 3AA0A 3DWOX 3DWNA 4O49A 1PHOA 4O4XA 4FRXA 2JQYA 3UAQA 3AAAB 4O4UA 2KZ7A 5KAIO 1Q9GA 4GCPA 1GFPA 4PR7A 3EMNX 3POUA 4RL9A 2R89A 2XE1A 2J1NA 3VE1A 2F1CX 3VZTX 3FYXA 3WU2O 4AYDC 4PUXA 4K3CA 3SY9A 1BH3A 2M06A 3AA1B 3HOLA 2XTQA 2XE2A 2XMXA 3VZUX 3DA3A 2Y0HA 4E1SA 4O3YA 3SYBA 1HXXA 4FZMA 1G90A 3LK3B 2YNKA 3AA6A 5G26A 1HXUA 1HXTA 3G7GA 3UPGA 4LSEA 4C4VA 2O4VA 3JTYA 4G75A 3AA0B 4LSIA 3JCUO 2KXPB 4FQEA 3VZWX 1IZNA 1BT9A 1QJ9A 4FSPA 5TISO 2IWWA 3C5OA 1T1LA 2K4TA 2KZ7B 2LFUA 1H6S1 3AAEB 1ZHYA 1ZHWA 3HWBA 3PORA 4RLBA 3VY8X 2J4UP 3SYSA 4LSHA 3AA7B 3LK42 4N74A 2W81C 4IL6O 1MM4A 2PRNA 2FGRA 2KDYA 3QRCA 2LHFA 2WJQA 5IYUA 1ZHTA 3A2SX 3SZVA 5ADXL 3DZMA 3T24A 2WVPA 2MHLA 2XE3A 2ZLDA 4GCQA 5DL8A 4PJ0O 1GFMA 7PRNA 5GTHO 3PQUA 4JFBA 4AKRA 2N2LA 4AYEC 3KVDD 3AA6B 2Y0LA 4Z3TA 1P4TA 2GE4A 1Q9FA 2Y7SA 5DL5A 3RBHA 4FUVA 4G76A 4AYNA 4C4VB 1QJPA 3LK2B 5D5DA 5T5FA 5KAFO 8PRNA 3BRZA 4D65A 5DL6A 4JCHA 3KZIO 2R8AA 3HW9A 1T16A 5G38A 1IZNB 4FMSA 3A0HO 3SZDA 3T0SA 2QTKA 4XNKA 5PRNA 3TZGA 3WI5A 3T20A 4C00A 4B61A 2F1VA 4UB8O 5AFUK 4CTDA 2XG6A 4F4BA 2ODJA 4FZLA 2ERVA 2Y2XA 2OMFA 1PRNA 3AAAA 3VE2A 2R4NA 3A0BO 1E54A 4AFKA 2WJRA 1GFQA 4N59A 1BXWA 1GFOA 3BRYA 3POXA 2AXTO 3QRAA 4KRAA 3HOEA 4D64A 4D5UA 2W80C 4N75A 4AKRB 2X27X 2KC0A 4AKMA 4E1TA 4U9CA 3AA1A 5JDPA 5H2FO 4FESA 5B66O 5GV0A 1ORMA 3NJTA 1S5LO 4GHBA 4O3ZA 4FOZA 2MNHA 3K19A 5G3AA 2Y0KA 1THQA 3PGRA 4O3XB 5AFUL 3LK3A 5B5EO 4RJXA 3GP6A 1OSMA 5GTIO 3UU2A 2X9KA 2XE5A 2IWVA 4RLCA 4UB6O 4KR8A 4N58A 2JMMA 2R4PA 3PGUA 4GCSA 4FZNA 2K0LA 3PQSA 2KXPA 5G39A 2M07A 4AUIA 3PRNA 3AAEA 3V8UA 2F1TA
chains in the Genus database with same CATH topology
3AA7A 4FRTA 2ZFGA 1MPFA 2PORA 4QQ1A 1GFNA 3POQA 2FGQX 1OPFA 4GF4A 3WI4A 4KR4A 4FT6A 4FSOA 5DL7A 4XNLA 3SY7A 3DA4A 4LSFA 4AYMC 4BUMX 3VY9X 2YPVA 4RJWA 5FVNA 1ZHZA 1ZHXA 2N2MA 2XTRA 3LK2A 3O0EA 6PRNA 5ADXK 5EE2A 3LK41 4O3WA 3NSGA 4AZLA 1YS5A 1MM5A 4C69X 1QJ8A 4AYID 3AA0A 4O49A 1PHOA 4O4XA 4FRXA 3UAQA 3AAAB 4O4UA 2KZ7A 1Q9GA 4GCPA 1GFPA 3EMNX 3POUA 4RL9A 2XE1A 3VZTX 2J1NA 3VE1A 3FYXA 4AYDC 4PUXA 3SY9A 1BH3A 2M06A 3AA1B 3HOLA 2XTQA 2XE2A 2XMXA 3VZUX 3DA3A 2Y0HA 4E1SA 4O3YA 3SYBA 1HXXA 4FZMA 1G90A 3LK3B 2YNKA 3AA6A 5G26A 1HXUA 1HXTA 3G7GA 3UPGA 4LSEA 2O4VA 3JTYA 4G75A 3AA0B 4LSIA 2KXPB 3VZWX 1IZNA 1BT9A 1QJ9A 4FSPA 3C5OA 2K4TA 2KZ7B 3AAEB 2LFUA 1H6S1 3PORA 1ZHYA 1ZHWA 3HWBA 4RLBA 3VY8X 3SYSA 4LSHA 3AA7B 3LK42 2W81C 1MM4A 2PRNA 2FGRA 2KDYA 3QRCA 2LHFA 5IYUA 1ZHTA 3A2SX 3SZVA 5ADXL 3T24A 2MHLA 2XE3A 2ZLDA 4GCQA 5DL8A 7PRNA 1GFMA 3PQUA 4JFBA 4AKRA 2N2LA 4AYEC 3KVDD 3AA6B 2Y0LA 4Z3TA 1P4TA 2GE4A 1Q9FA 2Y7SA 5DL5A 3RBHA 4FUVA 4G76A 4AYNA 1QJPA 3LK2B 5D5DA 5T5FA 8PRNA 4D65A 5DL6A 4JCHA 3HW9A 1IZNB 4FMSA 3SZDA 3T0SA 3TZGA 2QTKA 4XNKA 5PRNA 3WI5A 3T20A 4B61A 2F1VA 5AFUK 2XG6A 4F4BA 2ODJA 4FZLA 2ERVA 2Y2XA 2OMFA 1PRNA 3AAAA 3VE2A 1E54A 4AFKA 1GFQA 4N59A 1BXWA 1GFOA 3POXA 3QRAA 4KRAA 4D64A 4D5UA 3HOEA 2J4UP 2W80C 4AKRB 2X27X 2KC0A 4AKMA 4E1TA 4U9CA 3AA1A 5JDPA 4FESA 5GV0A 1ORMA 4O3ZA 4GHBA 4FOZA 2MNHA 3K19A 5AFUL 2Y0KA 1THQA 4O3XB 3LK3A 4RJXA 3GP6A 1OSMA 3UU2A 2XE5A 4RLCA 4KR8A 4N58A 2JMMA 4GCSA 4FZNA 2K0LA 3PQSA 2KXPA 2M07A 4AUIA 3PRNA 3AAEA 3V8UA 2F1TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FRT A;  2ZFG A;  1MPF A;  2POR A;  1GFN A;  3POQ A;  2FGQ X;  1OPF A;  3WI4 A;  4KR4 A;  4FT6 A;  4FSO A;  5DL7 A;  3SY7 A;  4LSF A;  4BUM X;  3VY9 X;  4RJW A;  5FVN A;  6PRN A;  3O0E A;  3NSG A;  4C69 X;  1PHO A;  4FRX A;  4GCP A;  1GFP A;  3EMN X;  3POU A;  3VZT X;  2XE1 A;  2J1N A;  3FYX A;  3SY9 A;  1BH3 A;  3VZU X;  2XE2 A;  2Y0H A;  3SYB A;  1HXX A;  1HXU A;  1HXT A;  3UPG A;  4LSE A;  2O4V A;  3JTY A;  4LSI A;  3VZW X;  1BT9 A;  4FSP A;  2K4T A;  3VY8 X;  1H6S 1;  3POR A;  3HWB A;  3SYS A;  4LSH A;  2PRN A;  2FGR A;  3A2S X;  3SZV A;  3T24 A;  2ZLD A;  2XE3 A;  4GCQ A;  5DL8 A;  7PRN A;  1GFM A;  4JFB A;  2Y0L A;  5DL5 A;  8PRN A;  4D65 A;  5DL6 A;  3HW9 A;  3T0S A;  4FMS A;  3SZD A;  2QTK A;  5PRN A;  3WI5 A;  3T20 A;  2XG6 A;  2ODJ A;  2Y2X A;  2OMF A;  1PRN A;  1E54 A;  1GFQ A;  1GFO A;  3POX A;  4KRA A;  4D64 A;  4D5U A;  2J4U P;  5JDP A;  4FOZ A;  3K19 A;  2Y0K A;  4RJX A;  1OSM A;  3UU2 A;  2XE5 A;  4KR8 A;  4GCS A;  4AUI A;  3PRN A; 
#chains in the Genus database with same CATH topology
 3AA7 A;  4FRT A;  2ZFG A;  4K3B A;  1MPF A;  2POR A;  4QQ1 A;  2R4O A;  1GFN A;  3POQ A;  2FGQ X;  1OPF A;  4GF4 A;  3WI4 A;  4KR4 A;  4FT6 A;  4FSO A;  5DL7 A;  4XNL A;  3SY7 A;  3DA4 A;  4LSF A;  4AYM C;  4BUM X;  3VY9 X;  3PF1 A;  2YPV A;  3PGS A;  3BS0 A;  4RJW A;  5E79 O;  5FVN A;  2R88 A;  2R4L A;  1ZHZ A;  1ZHX A;  2N2M A;  2XTR A;  3LK2 A;  3O0E A;  6PRN A;  5ADX K;  5EE2 A;  3LK4 1;  4O3W A;  3NSG A;  4AZL A;  1YS5 A;  1MM5 A;  4C69 X;  1QJ8 A;  4AYI D;  3AA0 A;  3DWO X;  3DWN A;  4O49 A;  1PHO A;  4O4X A;  4FRX A;  2JQY A;  3UAQ A;  3AAA B;  4O4U A;  2KZ7 A;  5KAI O;  1Q9G A;  4GCP A;  1GFP A;  4PR7 A;  3EMN X;  3POU A;  4RL9 A;  2R89 A;  2XE1 A;  2J1N A;  3VE1 A;  2F1C X;  3VZT X;  3FYX A;  3WU2 O;  4AYD C;  4PUX A;  4K3C A;  3SY9 A;  1BH3 A;  2M06 A;  3AA1 B;  3HOL A;  2XTQ A;  2XE2 A;  2XMX A;  3VZU X;  3DA3 A;  2Y0H A;  4E1S A;  4O3Y A;  3SYB A;  1HXX A;  4FZM A;  1G90 A;  3LK3 B;  2YNK A;  3AA6 A;  5G26 A;  1HXU A;  1HXT A;  3G7G A;  3UPG A;  4LSE A;  4C4V A;  2O4V A;  3JTY A;  4G75 A;  3AA0 B;  4LSI A;  3JCU O;  2KXP B;  4FQE A;  3VZW X;  1IZN A;  1BT9 A;  1QJ9 A;  4FSP A;  5TIS O;  2IWW A;  3C5O A;  1T1L A;  2K4T A;  2KZ7 B;  2LFU A;  1H6S 1;  3AAE B;  1ZHY A;  1ZHW A;  3HWB A;  3POR A;  4RLB A;  3VY8 X;  2J4U P;  3SYS A;  4LSH A;  3AA7 B;  3LK4 2;  4N74 A;  2W81 C;  4IL6 O;  1MM4 A;  2PRN A;  2FGR A;  2KDY A;  3QRC A;  2LHF A;  2WJQ A;  5IYU A;  1ZHT A;  3A2S X;  3SZV A;  5ADX L;  3DZM A;  3T24 A;  2WVP A;  2MHL A;  2XE3 A;  2ZLD A;  4GCQ A;  5DL8 A;  4PJ0 O;  1GFM A;  7PRN A;  5GTH O;  3PQU A;  4JFB A;  4AKR A;  2N2L A;  4AYE C;  3KVD D;  3AA6 B;  2Y0L A;  4Z3T A;  1P4T A;  2GE4 A;  1Q9F A;  2Y7S A;  5DL5 A;  3RBH A;  4FUV A;  4G76 A;  4AYN A;  4C4V B;  1QJP A;  3LK2 B;  5D5D A;  5T5F A;  5KAF O;  8PRN A;  3BRZ A;  4D65 A;  5DL6 A;  4JCH A;  3KZI O;  2R8A A;  3HW9 A;  1T16 A;  5G38 A;  1IZN B;  4FMS A;  3A0H O;  3SZD A;  3T0S A;  2QTK A;  4XNK A;  5PRN A;  3TZG A;  3WI5 A;  3T20 A;  4C00 A;  4B61 A;  2F1V A;  4UB8 O;  5AFU K;  4CTD A;  2XG6 A;  4F4B A;  2ODJ A;  4FZL A;  2ERV A;  2Y2X A;  2OMF A;  1PRN A;  3AAA A;  3VE2 A;  2R4N A;  3A0B O;  1E54 A;  4AFK A;  2WJR A;  1GFQ A;  4N59 A;  1BXW A;  1GFO A;  3BRY A;  3POX A;  2AXT O;  3QRA A;  4KRA A;  3HOE A;  4D64 A;  4D5U A;  2W80 C;  4N75 A;  4AKR B;  2X27 X;  2KC0 A;  4AKM A;  4E1T A;  4U9C A;  3AA1 A;  5JDP A;  5H2F O;  4FES A;  5B66 O;  5GV0 A;  1ORM A;  3NJT A;  1S5L O;  4GHB A;  4O3Z A;  4FOZ A;  2MNH A;  3K19 A;  5G3A A;  2Y0K A;  1THQ A;  3PGR A;  4O3X B;  5AFU L;  3LK3 A;  5B5E O;  4RJX A;  3GP6 A;  1OSM A;  5GTI O;  3UU2 A;  2X9K A;  2XE5 A;  2IWV A;  4RLC A;  4UB6 O;  4KR8 A;  4N58 A;  2JMM A;  2R4P A;  3PGU A;  4GCS A;  4FZN A;  2K0L A;  3PQS A;  2KXP A;  5G39 A;  2M07 A;  4AUI A;  3PRN A;  3AAE A;  3V8U A;  2F1T A; 
#chains in the Genus database with same CATH homology
 3AA7 A;  4FRT A;  2ZFG A;  1MPF A;  2POR A;  4QQ1 A;  1GFN A;  3POQ A;  2FGQ X;  1OPF A;  4GF4 A;  3WI4 A;  4KR4 A;  4FT6 A;  4FSO A;  5DL7 A;  4XNL A;  3SY7 A;  3DA4 A;  4LSF A;  4AYM C;  4BUM X;  3VY9 X;  2YPV A;  4RJW A;  5FVN A;  1ZHZ A;  1ZHX A;  2N2M A;  2XTR A;  3LK2 A;  3O0E A;  6PRN A;  5ADX K;  5EE2 A;  3LK4 1;  4O3W A;  3NSG A;  4AZL A;  1YS5 A;  1MM5 A;  4C69 X;  1QJ8 A;  4AYI D;  3AA0 A;  4O49 A;  1PHO A;  4O4X A;  4FRX A;  3UAQ A;  3AAA B;  4O4U A;  2KZ7 A;  1Q9G A;  4GCP A;  1GFP A;  3EMN X;  3POU A;  4RL9 A;  2XE1 A;  3VZT X;  2J1N A;  3VE1 A;  3FYX A;  4AYD C;  4PUX A;  3SY9 A;  1BH3 A;  2M06 A;  3AA1 B;  3HOL A;  2XTQ A;  2XE2 A;  2XMX A;  3VZU X;  3DA3 A;  2Y0H A;  4E1S A;  4O3Y A;  3SYB A;  1HXX A;  4FZM A;  1G90 A;  3LK3 B;  2YNK A;  3AA6 A;  5G26 A;  1HXU A;  1HXT A;  3G7G A;  3UPG A;  4LSE A;  2O4V A;  3JTY A;  4G75 A;  3AA0 B;  4LSI A;  2KXP B;  3VZW X;  1IZN A;  1BT9 A;  1QJ9 A;  4FSP A;  3C5O A;  2K4T A;  2KZ7 B;  3AAE B;  2LFU A;  1H6S 1;  3POR A;  1ZHY A;  1ZHW A;  3HWB A;  4RLB A;  3VY8 X;  3SYS A;  4LSH A;  3AA7 B;  3LK4 2;  2W81 C;  1MM4 A;  2PRN A;  2FGR A;  2KDY A;  3QRC A;  2LHF A;  5IYU A;  1ZHT A;  3A2S X;  3SZV A;  5ADX L;  3T24 A;  2MHL A;  2XE3 A;  2ZLD A;  4GCQ A;  5DL8 A;  7PRN A;  1GFM A;  3PQU A;  4JFB A;  4AKR A;  2N2L A;  4AYE C;  3KVD D;  3AA6 B;  2Y0L A;  4Z3T A;  1P4T A;  2GE4 A;  1Q9F A;  2Y7S A;  5DL5 A;  3RBH A;  4FUV A;  4G76 A;  4AYN A;  1QJP A;  3LK2 B;  5D5D A;  5T5F A;  8PRN A;  4D65 A;  5DL6 A;  4JCH A;  3HW9 A;  1IZN B;  4FMS A;  3SZD A;  3T0S A;  3TZG A;  2QTK A;  4XNK A;  5PRN A;  3WI5 A;  3T20 A;  4B61 A;  2F1V A;  5AFU K;  2XG6 A;  4F4B A;  2ODJ A;  4FZL A;  2ERV A;  2Y2X A;  2OMF A;  1PRN A;  3AAA A;  3VE2 A;  1E54 A;  4AFK A;  1GFQ A;  4N59 A;  1BXW A;  1GFO A;  3POX A;  3QRA A;  4KRA A;  4D64 A;  4D5U A;  3HOE A;  2J4U P;  2W80 C;  4AKR B;  2X27 X;  2KC0 A;  4AKM A;  4E1T A;  4U9C A;  3AA1 A;  5JDP A;  4FES A;  5GV0 A;  1ORM A;  4O3Z A;  4GHB A;  4FOZ A;  2MNH A;  3K19 A;  5AFU L;  2Y0K A;  1THQ A;  4O3X B;  3LK3 A;  4RJX A;  3GP6 A;  1OSM A;  3UU2 A;  2XE5 A;  4RLC A;  4KR8 A;  4N58 A;  2JMM A;  4GCS A;  4FZN A;  2K0L A;  3PQS A;  2KXP A;  2M07 A;  4AUI A;  3PRN A;  3AAE A;  3V8U A;  2F1T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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