4GF4 | Genus

Total Genus 75

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	75
sequence length	418
structure length	299
Chain Sequence	FSSESKWMTGDWGGTRTELLDKGYDFTLDYVGEVAGNLDDKTARYSDQFALGAHLDLQKILGWHDAEFKLAITERSGRNLSNDRFSSVQEVWGRGQTWRLTQMWIKQKYFDGALDVKFGRFGEGEDFNSNWPVSQWALRVKYNITPAFFVQVGAFEQTKGAIMPMEAVWSPKVNGLPGEYRLGYYYSTSKHGWWVVAQQQVTAHGGDVNRGLSLFANFTVHDKVDNYQQVGLVYKGAFDARPKDDIGFGVARIHVNQRTEYNAELYYGFHVTNWLTVRPNLQYIKSNALVAGMKMQSSF

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transport protein
source organism	Pseudomonas putida
publication title	Structural basis for outer membrane sugar uptake in pseudomonads. pubmed doi rcsb
molecule keywords	Porin B
total genus	75
structure length	299
sequence length	418
ec nomenclature
pdb deposition date	2012-08-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04966	OprB	Carbohydrate-selective porin, OprB family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.180	Mainly Beta	Beta Barrel	Porin	Porin	4gf4A00

4GF4A
chains in the Genus database with same CATH superfamily

1YS5A 4FSPA 2XE3A 2Y0KA 4O3XB 3PORA 4RL9A 4D64A 7PRNA 2J1NA 2R88A 3AA7B 4Z3TA 3A0BO 1QJ9A 3O0EA 3QRAA 3TZGA 2OMFA 5ADXK 1MM4A 2F1TA 5E79O 3LK2A 4O3ZA 3G7GA 3DA3A 4N74A 4AYEC 6PRNA 4FRXA 4B61A 3T0SA 3GP6A 4AYDC 3FYXA 3POXA 3DWNA 2K4TA 4D5UA 5DL8A 3PRNA 4FQEA 4O4UA 4RLBA 3WU2O 3VZWX 5G26A 4LSFA 1ZHXA 2K0LA 4AKRB 4PR7A 2WJQA 1OPFA 4KR4A 4E1TA 1GFNA 2PRNA 3T24A 2XE2A 1HXTA 1T16A 4RJWA 1PRNA 2W80C 3SZDA 5IYUA 4FESA 2FGRA 2R89A 1H6S1 3AA1B 2ODJA 2Y0LA 3A2SX 4CTDA 2W81C 2IWVA 4FOZA 4AFKA 3AA6B 3PQUA 3RBHA 5GTIO 1OSMA 3LK2B 4K3CA 3KZIO 3PGUA 4O3YA 2KZ7B 3JTYA 3AAEA 1QJPA 3WI4A 4FSOA 4O3WA 5H2FO 4KR8A 3POUA 3AAAA 1IZNB 2AXTO 5G39A 2LHFA 3AA0A 4AYNA 1E54A 4F4BA 1ORMA 5GTHO 2ZLDA 4FT6A 4GCQA 4UB6O 5FVNA 3VE1A 2XMXA 4G75A 4GCPA 4N58A 2XE1A 4XNLA 4FMSA 3EMNX 1GFOA 4UB8O 3SY9A 4C00A 4C4VA 3K19A 2YPVA 2F1CX 5KAFO 2PORA 1Q9FA 2Y2XA 1THQA 4KRAA 3DZMA 3NSGA 1S5LO 3SYSA 1MPFA 1GFMA 2LFUA 2F1VA 2IWWA 2M06A 4AYID 1QJ8A 4PUXA 1Q9GA 4LSEA 3UU2A 3LK3A 2QTKA 2YNKA 4E1SA 3LK41 4JFBA 3NJTA 5AFUK 3AA7A 3PQSA 3BRZA 3POQA 5TISO 2X9KA 1BXWA 1BH3A 3SY7A 2R4LA 1ZHZA 3V8UA 1GFPA 2MHLA 4C4VB 4GHBA 4O4XA 4AKMA 5AFUL 3UPGA 2N2LA 2MNHA 4U9CA 5DL7A 3PF1A 2Y7SA 3C5OA 2XE5A 4GF4A 4AZLA 4FZLA 5JDPA 3HW9A 2M07A 5G38A 1HXXA 1MM5A 4D65A 5ADXL 3BRYA 3PGSA 3QRCA 2J4UP 1GFQA 2R4OA 5EE2A 3A0HO 4AKRA 2WVPA 3VE2A 4BUMX 1G90A 2JQYA 2XTQA 2R8AA 1ZHTA 2KXPA 2O4VA 2GE4A 3SZVA 4GCSA 2XTRA 3VY8X 3VY9X 2N2MA 3AAEB 5KAIO 8PRNA 2FGQX 3AA1A 3BS0A 2R4NA 4FZNA 4LSHA 4O49A 1PHOA 1HXUA 3HOLA 5B66O 3VZUX 5D5DA 3AAAB 3AA6A 4N75A 3SYBA 5B5EO 3AA0B 3LK42 1ZHYA 4XNKA 4N59A 5GV0A 3HWBA 2ERVA 2KZ7A 2KC0A 3HOEA 3PGRA 4AUIA 2WJRA 4RLCA 3T20A 5DL5A 5DL6A 5G3AA 4K3BA 4PJ0O 4AYMC 3DWOX 1IZNA 5PRNA 1BT9A 4FUVA 1T1LA 4FZMA 2ZFGA 3KVDD 1P4TA 4IL6O 2R4PA 3JCUO 4JCHA 4LSIA 2JMMA 4RJXA 4FRTA 4C69X 1ZHWA 3VZTX 5T5FA 3UAQA 3WI5A 2KXPB 2XG6A 4QQ1A 2KDYA 4G76A 3LK3B 2Y0HA 3DA4A 2X27X
chains in the Genus database with same CATH topology

1YS5A 4FSPA 2XE3A 2Y0KA 4O3XB 3PORA 4RL9A 4D64A 7PRNA 2J1NA 3AA7B 4Z3TA 1QJ9A 3O0EA 3QRAA 3TZGA 2OMFA 5ADXK 1MM4A 2F1TA 3LK2A 4O3ZA 3G7GA 3DA3A 4AYEC 6PRNA 4FRXA 4B61A 3T0SA 3GP6A 4AYDC 3FYXA 3POXA 2K4TA 4D5UA 5DL8A 3PRNA 4RLBA 4O4UA 3VZWX 5G26A 4LSFA 1ZHXA 2K0LA 4AKRB 1OPFA 4KR4A 4E1TA 1GFNA 2PRNA 3T24A 2XE2A 1HXTA 4RJWA 3SZDA 1PRNA 2W80C 5IYUA 4FESA 2FGRA 1H6S1 3AA1B 2ODJA 2Y0LA 3A2SX 2W81C 4AFKA 4FOZA 3AA6B 3PQUA 3RBHA 1OSMA 3LK2B 4O3YA 2KZ7B 3JTYA 3AAEA 1QJPA 3WI4A 4FSOA 4O3WA 4KR8A 3POUA 3AAAA 1IZNB 2LHFA 3AA0A 4AYNA 1E54A 4F4BA 1ORMA 2ZLDA 4FT6A 4GCQA 3VE1A 5FVNA 2XMXA 4G75A 4GCPA 4N58A 2XE1A 4XNLA 4FMSA 3EMNX 1GFOA 3SY9A 3K19A 2YPVA 2PORA 1Q9FA 2Y2XA 1THQA 4KRAA 3NSGA 3SYSA 1MPFA 1GFMA 2LFUA 2F1VA 2M06A 4AYID 1QJ8A 4PUXA 1Q9GA 4LSEA 3UU2A 3LK3A 2QTKA 2YNKA 4E1SA 3LK41 4JFBA 5AFUK 3AA7A 3PQSA 3POQA 1BXWA 1BH3A 3SY7A 1ZHZA 3V8UA 1GFPA 2MHLA 4GHBA 4O4XA 4AKMA 3UPGA 2N2LA 2MNHA 4U9CA 5DL7A 2Y7SA 3C5OA 2XE5A 4GF4A 4AZLA 4FZLA 5JDPA 3HW9A 2M07A 1HXXA 1MM5A 4D65A 5ADXL 3QRCA 2J4UP 1GFQA 5EE2A 4AKRA 4BUMX 3VE2A 2XTQA 1ZHTA 2O4VA 2KXPA 2GE4A 3SZVA 4GCSA 2XTRA 3VY8X 3VY9X 2N2MA 3AAEB 8PRNA 1G90A 2FGQX 3AA1A 4FZNA 4LSHA 4O49A 1PHOA 1HXUA 3HOLA 3VZUX 5D5DA 3AAAB 3AA6A 3SYBA 3AA0B 3LK42 1ZHYA 4XNKA 4N59A 5GV0A 3HWBA 2ERVA 2KZ7A 2KC0A 3HOEA 4AUIA 4RLCA 3T20A 5DL5A 5DL6A 4AYMC 1IZNA 5PRNA 1BT9A 4FUVA 4FZMA 4JCHA 2ZFGA 3KVDD 1P4TA 4LSIA 4RJXA 5AFUL 2JMMA 4C69X 4FRTA 1ZHWA 3VZTX 5T5FA 3UAQA 3WI5A 2KXPB 2XG6A 4QQ1A 2KDYA 4G76A 3LK3B 2Y0HA 3DA4A 2X27X
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4GF4 A; 
#chains in the Genus database with same CATH topology
 1YS5 A;  4FSP A;  2XE3 A;  2Y0K A;  4O3X B;  3POR A;  4RL9 A;  4D64 A;  7PRN A;  2J1N A;  2R88 A;  3AA7 B;  4Z3T A;  3A0B O;  1QJ9 A;  3O0E A;  3QRA A;  3TZG A;  2OMF A;  5ADX K;  1MM4 A;  2F1T A;  5E79 O;  3LK2 A;  4O3Z A;  3G7G A;  3DA3 A;  4N74 A;  4AYE C;  6PRN A;  4FRX A;  4B61 A;  3T0S A;  3GP6 A;  4AYD C;  3FYX A;  3POX A;  3DWN A;  2K4T A;  4D5U A;  5DL8 A;  3PRN A;  4FQE A;  4O4U A;  4RLB A;  3WU2 O;  3VZW X;  5G26 A;  4LSF A;  1ZHX A;  2K0L A;  4AKR B;  4PR7 A;  2WJQ A;  1OPF A;  4KR4 A;  4E1T A;  1GFN A;  2PRN A;  3T24 A;  2XE2 A;  1HXT A;  1T16 A;  4RJW A;  1PRN A;  2W80 C;  3SZD A;  5IYU A;  4FES A;  2FGR A;  2R89 A;  1H6S 1;  3AA1 B;  2ODJ A;  2Y0L A;  3A2S X;  4CTD A;  2W81 C;  2IWV A;  4FOZ A;  4AFK A;  3AA6 B;  3PQU A;  3RBH A;  5GTI O;  1OSM A;  3LK2 B;  4K3C A;  3KZI O;  3PGU A;  4O3Y A;  2KZ7 B;  3JTY A;  3AAE A;  1QJP A;  3WI4 A;  4FSO A;  4O3W A;  5H2F O;  4KR8 A;  3POU A;  3AAA A;  1IZN B;  2AXT O;  5G39 A;  2LHF A;  3AA0 A;  4AYN A;  1E54 A;  4F4B A;  1ORM A;  5GTH O;  2ZLD A;  4FT6 A;  4GCQ A;  4UB6 O;  5FVN A;  3VE1 A;  2XMX A;  4G75 A;  4GCP A;  4N58 A;  2XE1 A;  4XNL A;  4FMS A;  3EMN X;  1GFO A;  4UB8 O;  3SY9 A;  4C00 A;  4C4V A;  3K19 A;  2YPV A;  2F1C X;  5KAF O;  2POR A;  1Q9F A;  2Y2X A;  1THQ A;  4KRA A;  3DZM A;  3NSG A;  1S5L O;  3SYS A;  1MPF A;  1GFM A;  2LFU A;  2F1V A;  2IWW A;  2M06 A;  4AYI D;  1QJ8 A;  4PUX A;  1Q9G A;  4LSE A;  3UU2 A;  3LK3 A;  2QTK A;  2YNK A;  4E1S A;  3LK4 1;  4JFB A;  3NJT A;  5AFU K;  3AA7 A;  3PQS A;  3BRZ A;  3POQ A;  5TIS O;  2X9K A;  1BXW A;  1BH3 A;  3SY7 A;  2R4L A;  1ZHZ A;  3V8U A;  1GFP A;  2MHL A;  4C4V B;  4GHB A;  4O4X A;  4AKM A;  5AFU L;  3UPG A;  2N2L A;  2MNH A;  4U9C A;  5DL7 A;  3PF1 A;  2Y7S A;  3C5O A;  2XE5 A;  4GF4 A;  4AZL A;  4FZL A;  5JDP A;  3HW9 A;  2M07 A;  5G38 A;  1HXX A;  1MM5 A;  4D65 A;  5ADX L;  3BRY A;  3PGS A;  3QRC A;  2J4U P;  1GFQ A;  2R4O A;  5EE2 A;  3A0H O;  4AKR A;  2WVP A;  3VE2 A;  4BUM X;  1G90 A;  2JQY A;  2XTQ A;  2R8A A;  1ZHT A;  2KXP A;  2O4V A;  2GE4 A;  3SZV A;  4GCS A;  2XTR A;  3VY8 X;  3VY9 X;  2N2M A;  3AAE B;  5KAI O;  8PRN A;  2FGQ X;  3AA1 A;  3BS0 A;  2R4N A;  4FZN A;  4LSH A;  4O49 A;  1PHO A;  1HXU A;  3HOL A;  5B66 O;  3VZU X;  5D5D A;  3AAA B;  3AA6 A;  4N75 A;  3SYB A;  5B5E O;  3AA0 B;  3LK4 2;  1ZHY A;  4XNK A;  4N59 A;  5GV0 A;  3HWB A;  2ERV A;  2KZ7 A;  2KC0 A;  3HOE A;  3PGR A;  4AUI A;  2WJR A;  4RLC A;  3T20 A;  5DL5 A;  5DL6 A;  5G3A A;  4K3B A;  4PJ0 O;  4AYM C;  3DWO X;  1IZN A;  5PRN A;  1BT9 A;  4FUV A;  1T1L A;  4FZM A;  2ZFG A;  3KVD D;  1P4T A;  4IL6 O;  2R4P A;  3JCU O;  4JCH A;  4LSI A;  2JMM A;  4RJX A;  4FRT A;  4C69 X;  1ZHW A;  3VZT X;  5T5F A;  3UAQ A;  3WI5 A;  2KXP B;  2XG6 A;  4QQ1 A;  2KDY A;  4G76 A;  3LK3 B;  2Y0H A;  3DA4 A;  2X27 X; 
#chains in the Genus database with same CATH homology
 1YS5 A;  4FSP A;  2XE3 A;  2Y0K A;  4O3X B;  3POR A;  4RL9 A;  4D64 A;  7PRN A;  2J1N A;  3AA7 B;  4Z3T A;  1QJ9 A;  3O0E A;  3QRA A;  3TZG A;  2OMF A;  5ADX K;  1MM4 A;  2F1T A;  3LK2 A;  4O3Z A;  3G7G A;  3DA3 A;  4AYE C;  6PRN A;  4FRX A;  4B61 A;  3T0S A;  3GP6 A;  4AYD C;  3FYX A;  3POX A;  2K4T A;  4D5U A;  5DL8 A;  3PRN A;  4RLB A;  4O4U A;  3VZW X;  5G26 A;  4LSF A;  1ZHX A;  2K0L A;  4AKR B;  1OPF A;  4KR4 A;  4E1T A;  1GFN A;  2PRN A;  3T24 A;  2XE2 A;  1HXT A;  4RJW A;  3SZD A;  1PRN A;  2W80 C;  5IYU A;  4FES A;  2FGR A;  1H6S 1;  3AA1 B;  2ODJ A;  2Y0L A;  3A2S X;  2W81 C;  4AFK A;  4FOZ A;  3AA6 B;  3PQU A;  3RBH A;  1OSM A;  3LK2 B;  4O3Y A;  2KZ7 B;  3JTY A;  3AAE A;  1QJP A;  3WI4 A;  4FSO A;  4O3W A;  4KR8 A;  3POU A;  3AAA A;  1IZN B;  2LHF A;  3AA0 A;  4AYN A;  1E54 A;  4F4B A;  1ORM A;  2ZLD A;  4FT6 A;  4GCQ A;  3VE1 A;  5FVN A;  2XMX A;  4G75 A;  4GCP A;  4N58 A;  2XE1 A;  4XNL A;  4FMS A;  3EMN X;  1GFO A;  3SY9 A;  3K19 A;  2YPV A;  2POR A;  1Q9F A;  2Y2X A;  1THQ A;  4KRA A;  3NSG A;  3SYS A;  1MPF A;  1GFM A;  2LFU A;  2F1V A;  2M06 A;  4AYI D;  1QJ8 A;  4PUX A;  1Q9G A;  4LSE A;  3UU2 A;  3LK3 A;  2QTK A;  2YNK A;  4E1S A;  3LK4 1;  4JFB A;  5AFU K;  3AA7 A;  3PQS A;  3POQ A;  1BXW A;  1BH3 A;  3SY7 A;  1ZHZ A;  3V8U A;  1GFP A;  2MHL A;  4GHB A;  4O4X A;  4AKM A;  3UPG A;  2N2L A;  2MNH A;  4U9C A;  5DL7 A;  2Y7S A;  3C5O A;  2XE5 A;  4GF4 A;  4AZL A;  4FZL A;  5JDP A;  3HW9 A;  2M07 A;  1HXX A;  1MM5 A;  4D65 A;  5ADX L;  3QRC A;  2J4U P;  1GFQ A;  5EE2 A;  4AKR A;  4BUM X;  3VE2 A;  2XTQ A;  1ZHT A;  2O4V A;  2KXP A;  2GE4 A;  3SZV A;  4GCS A;  2XTR A;  3VY8 X;  3VY9 X;  2N2M A;  3AAE B;  8PRN A;  1G90 A;  2FGQ X;  3AA1 A;  4FZN A;  4LSH A;  4O49 A;  1PHO A;  1HXU A;  3HOL A;  3VZU X;  5D5D A;  3AAA B;  3AA6 A;  3SYB A;  3AA0 B;  3LK4 2;  1ZHY A;  4XNK A;  4N59 A;  5GV0 A;  3HWB A;  2ERV A;  2KZ7 A;  2KC0 A;  3HOE A;  4AUI A;  4RLC A;  3T20 A;  5DL5 A;  5DL6 A;  4AYM C;  1IZN A;  5PRN A;  1BT9 A;  4FUV A;  4FZM A;  4JCH A;  2ZFG A;  3KVD D;  1P4T A;  4LSI A;  4RJX A;  5AFU L;  2JMM A;  4C69 X;  4FRT A;  1ZHW A;  3VZT X;  5T5F A;  3UAQ A;  3WI5 A;  2KXP B;  2XG6 A;  4QQ1 A;  2KDY A;  4G76 A;  3LK3 B;  2Y0H A;  3DA4 A;  2X27 X;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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4GF4A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations