4IL6O

Structure of sr-substituted photosystem ii
Total Genus 53

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
244
structure length
244
Chain Sequence
QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (7-10)TII1 (10-13)3H1 (15-17)S2 (38-53)TI1 (23-26)O1 (19-44)TVIII4 (133-136)TIV1 (33-36)S1 (30-31)TIV4 (130-133)S14 (232-245)S5 (78-87)S3 (65-67)TVIII3 (59-62)S7 (103-109)S4 (69-70)TIV2 (70-73)EMPTYTIV3 (72-75)S6 (93-99)TI3 (88-91)S9 (126-129)S8 (115-121)TII3 (122-125)S11 (141-149)TVIII5 (150-153)TI5 (153-156)TIV5 (163-166)AH2 (183-186)TI6 (158-161)TI7 (171-174)TIV7 (172-175)3H2 (180-182)TI8 (174-177)3H3 (224-226)TIV8 (205-208)TI9 (206-209)S13 (210-220)S12 (192-205)S10 (135-136)TI4 (137-140)TII2 (110-113)Updating...
connected with : NaN
molecule tags Electron transport
publication title Structure of Sr-substituted photosystem II at 2.1 A resolution and its implications in the mechanism of water oxidation
pubmed doi rcsb
molecule keywords Photosystem Q(B) protein
total genus 53
structure length 244
sequence length 244
chains with identical sequence o
ec nomenclature
pdb deposition date 2012-12-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF01716 MSP Manganese-stabilising protein / photosystem II polypeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 4il6O01
3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domain 4il6O02
5H2FO 1S5LO 5GTHO 4PJ0O 5KAIO 3WU2O 5B66O 5G3AA 5TISO 2AXTO 4UB8O 5G39A 5GTIO 5B5EO 5G38A 3A0HO 3JCUO 5KAFO 4IL6O 3A0BO 3KZIO 5E79O 4UB6O
chains in the Genus database with same CATH superfamily
5H2FO 3AAEB 3TZGA 3AAAB 5B5EO 4D64A 1T16A 1GFNA 5G26A 2KXPA 3T24A 5GTHO 1MM4A 2FGRA 3UAQA 2M06A 1HXXA 2R89A 4O3YA 3A2SX 3RBHA 4AKRB 7PRNA 1Q9GA 5ADXL 3BRZA 2WJRA 3HWBA 3WI4A 4CTDA 2KZ7B 4N58A 1Q9FA 4B61A 2AXTO 2ZLDA 5DL6A 3JTYA 2YPVA 5DL8A 5GTIO 5AFUK 4FOZA 5G38A 4AKRA 3PQUA 3T20A 2N2MA 1MM5A 3PQSA 2LFUA 4PR7A 4FESA 3VE1A 3DA3A 2J4UP 3SZVA 3KZIO 3EMNX 2R4OA 5GV0A 4K3CA 8PRNA 2IWWA 1OSMA 2R8AA 3SYSA 1ZHTA 3KVDD 2QTKA 2XE5A 3LK41 4GHBA 1HXUA 4QQ1A 4RJXA 5JDPA 3NJTA 3AA0A 4U9CA 4O49A 2ERVA 3POXA 4FZLA 1BXWA 3SY9A 1GFQA 4FSOA 4GCSA 4PUXA 3HOLA 1QJ8A 3BS0A 3PORA 4LSIA 3T0SA 2K4TA 3LK2B 4O3WA 3VY8X 1ZHZA 2F1CX 3HW9A 4F4BA 2KDYA 1PHOA 4LSFA 1H6S1 2XE1A 2M07A 2Y0KA 3GP6A 1BH3A 2LHFA 2O4VA 1GFPA 2PORA 2ZFGA 3POQA 2Y7SA 3LK2A 4E1TA 3QRCA 2FGQX 4RLCA 4FQEA 5T5FA 3K19A 4AYMC 5AFUL 2X9KA 1ORMA 3PF1A 4FRXA 3LK3A 1THQA 1GFOA 3AA0B 5E79O 3AA1B 4XNKA 2KC0A 2OMFA 3DZMA 3PGSA 2YNKA 4UB6O 3NSGA 1PRNA 1ZHXA 3G7GA 3AA6B 4RL9A 1QJPA 2JMMA 4FT6A 3SZDA 1P4TA 4AZLA 2K0LA 3AA1A 1S5LO 4N59A 5FVNA 4AYDC 2R4LA 5PRNA 5ADXK 4C00A 4C4VB 2JQYA 2ODJA 2W81C 4JCHA 4O3XB 5KAIO 3AA7A 4BUMX 4FZNA 3AA6A 4O4UA 2R88A 4D65A 3UPGA 2J1NA 4FRTA 1ZHWA 4LSEA 1ZHYA 4D5UA 4FSPA 2F1VA 5TISO 4C4VA 3DWNA 3LK3B 3QRAA 4AFKA 4UB8O 4O3ZA 2R4PA 3FYXA 2W80C 5D5DA 5KAFO 4AYID 4IL6O 1MPFA 1QJ9A 4FMSA 5IYUA 2MNHA 1HXTA 4G76A 2F1TA 2WJQA 2PRNA 3PGUA 4AYEC 2XTRA 6PRNA 3UU2A 2Y0HA 3SYBA 3PGRA 4LSHA 3AA7B 5DL5A 3VZTX 4AYNA 4AKMA 4N75A 4G75A 3SY7A 2GE4A 4Z3TA 1G90A 3AAEA 4FUVA 3DA4A 4PJ0O 3WU2O 5DL7A 4K3BA 3AAAA 3DWOX 3V8UA 2N2LA 4KRAA 4RJWA 3VZWX 1E54A 5B66O 3C5OA 2XTQA 3O0EA 4GCPA 3PRNA 4JFBA 4RLBA 5G3AA 4AUIA 2MHLA 2XMXA 3VY9X 5G39A 1BT9A 2R4NA 4GF4A 4E1SA 3A0HO 2IWVA 3JCUO 2XE2A 4GCQA 2WVPA 1T1LA 1IZNB 2KZ7A 3HOEA 2XG6A 2Y2XA 3A0BO 3POUA 4KR4A 4XNLA 3VE2A 1OPFA 3LK42 4O4XA 3WI5A 4N74A 1YS5A 5EE2A 2KXPB 3BRYA 2XE3A 4KR8A 2X27X 2Y0LA 3VZUX 4FZMA 1IZNA 1GFMA 4C69X
chains in the Genus database with same CATH topology
5H2FO 1S5LO 5GTHO 4PJ0O 5KAIO 3WU2O 5B66O 5G3AA 5TISO 2AXTO 4UB8O 5G39A 5GTIO 5B5EO 5G38A 3A0HO 3JCUO 5KAFO 4IL6O 3A0BO 3KZIO 5E79O 4UB6O
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5H2F O;  1S5L O;  5GTH O;  4PJ0 O;  5KAI O;  3WU2 O;  5B66 O;  5G3A A;  5TIS O;  2AXT O;  4UB8 O;  5G39 A;  5GTI O;  5B5E O;  5G38 A;  3A0H O;  3JCU O;  5KAF O;  4IL6 O;  3A0B O;  3KZI O;  5E79 O;  4UB6 O; 
#chains in the Genus database with same CATH topology
 5H2F O;  3AAE B;  3TZG A;  3AAA B;  5B5E O;  4D64 A;  1T16 A;  1GFN A;  5G26 A;  2KXP A;  3T24 A;  5GTH O;  1MM4 A;  2FGR A;  3UAQ A;  2M06 A;  1HXX A;  2R89 A;  4O3Y A;  3A2S X;  3RBH A;  4AKR B;  7PRN A;  1Q9G A;  5ADX L;  3BRZ A;  2WJR A;  3HWB A;  3WI4 A;  4CTD A;  2KZ7 B;  4N58 A;  1Q9F A;  4B61 A;  2AXT O;  2ZLD A;  5DL6 A;  3JTY A;  2YPV A;  5DL8 A;  5GTI O;  5AFU K;  4FOZ A;  5G38 A;  4AKR A;  3PQU A;  3T20 A;  2N2M A;  1MM5 A;  3PQS A;  2LFU A;  4PR7 A;  4FES A;  3VE1 A;  3DA3 A;  2J4U P;  3SZV A;  3KZI O;  3EMN X;  2R4O A;  5GV0 A;  4K3C A;  8PRN A;  2IWW A;  1OSM A;  2R8A A;  3SYS A;  1ZHT A;  3KVD D;  2QTK A;  2XE5 A;  3LK4 1;  4GHB A;  1HXU A;  4QQ1 A;  4RJX A;  5JDP A;  3NJT A;  3AA0 A;  4U9C A;  4O49 A;  2ERV A;  3POX A;  4FZL A;  1BXW A;  3SY9 A;  1GFQ A;  4FSO A;  4GCS A;  4PUX A;  3HOL A;  1QJ8 A;  3BS0 A;  3POR A;  4LSI A;  3T0S A;  2K4T A;  3LK2 B;  4O3W A;  3VY8 X;  1ZHZ A;  2F1C X;  3HW9 A;  4F4B A;  2KDY A;  1PHO A;  4LSF A;  1H6S 1;  2XE1 A;  2M07 A;  2Y0K A;  3GP6 A;  1BH3 A;  2LHF A;  2O4V A;  1GFP A;  2POR A;  2ZFG A;  3POQ A;  2Y7S A;  3LK2 A;  4E1T A;  3QRC A;  2FGQ X;  4RLC A;  4FQE A;  5T5F A;  3K19 A;  4AYM C;  5AFU L;  2X9K A;  1ORM A;  3PF1 A;  4FRX A;  3LK3 A;  1THQ A;  1GFO A;  3AA0 B;  5E79 O;  3AA1 B;  4XNK A;  2KC0 A;  2OMF A;  3DZM A;  3PGS A;  2YNK A;  4UB6 O;  3NSG A;  1PRN A;  1ZHX A;  3G7G A;  3AA6 B;  4RL9 A;  1QJP A;  2JMM A;  4FT6 A;  3SZD A;  1P4T A;  4AZL A;  2K0L A;  3AA1 A;  1S5L O;  4N59 A;  5FVN A;  4AYD C;  2R4L A;  5PRN A;  5ADX K;  4C00 A;  4C4V B;  2JQY A;  2ODJ A;  2W81 C;  4JCH A;  4O3X B;  5KAI O;  3AA7 A;  4BUM X;  4FZN A;  3AA6 A;  4O4U A;  2R88 A;  4D65 A;  3UPG A;  2J1N A;  4FRT A;  1ZHW A;  4LSE A;  1ZHY A;  4D5U A;  4FSP A;  2F1V A;  5TIS O;  4C4V A;  3DWN A;  3LK3 B;  3QRA A;  4AFK A;  4UB8 O;  4O3Z A;  2R4P A;  3FYX A;  2W80 C;  5D5D A;  5KAF O;  4AYI D;  4IL6 O;  1MPF A;  1QJ9 A;  4FMS A;  5IYU A;  2MNH A;  1HXT A;  4G76 A;  2F1T A;  2WJQ A;  2PRN A;  3PGU A;  4AYE C;  2XTR A;  6PRN A;  3UU2 A;  2Y0H A;  3SYB A;  3PGR A;  4LSH A;  3AA7 B;  5DL5 A;  3VZT X;  4AYN A;  4AKM A;  4N75 A;  4G75 A;  3SY7 A;  2GE4 A;  4Z3T A;  1G90 A;  3AAE A;  4FUV A;  3DA4 A;  4PJ0 O;  3WU2 O;  5DL7 A;  4K3B A;  3AAA A;  3DWO X;  3V8U A;  2N2L A;  4KRA A;  4RJW A;  3VZW X;  1E54 A;  5B66 O;  3C5O A;  2XTQ A;  3O0E A;  4GCP A;  3PRN A;  4JFB A;  4RLB A;  5G3A A;  4AUI A;  2MHL A;  2XMX A;  3VY9 X;  5G39 A;  1BT9 A;  2R4N A;  4GF4 A;  4E1S A;  3A0H O;  2IWV A;  3JCU O;  2XE2 A;  4GCQ A;  2WVP A;  1T1L A;  1IZN B;  2KZ7 A;  3HOE A;  2XG6 A;  2Y2X A;  3A0B O;  3POU A;  4KR4 A;  4XNL A;  3VE2 A;  1OPF A;  3LK4 2;  4O4X A;  3WI5 A;  4N74 A;  1YS5 A;  5EE2 A;  2KXP B;  3BRY A;  2XE3 A;  4KR8 A;  2X27 X;  2Y0L A;  3VZU X;  4FZM A;  1IZN A;  1GFM A;  4C69 X; 
#chains in the Genus database with same CATH homology
 5H2F O;  1S5L O;  5GTH O;  4PJ0 O;  5KAI O;  3WU2 O;  5B66 O;  5G3A A;  5TIS O;  2AXT O;  4UB8 O;  5G39 A;  5GTI O;  5B5E O;  5G38 A;  3A0H O;  3JCU O;  5KAF O;  4IL6 O;  3A0B O;  3KZI O;  5E79 O;  4UB6 O; 
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