4IL6O

Structure of sr-substituted photosystem ii
Total Genus 53

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
244
structure length
244
Chain Sequence
QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (7-10)TII1 (10-13)3H1 (15-17)S2 (38-53)TI1 (23-26)O1 (19-44)TVIII4 (133-136)TIV1 (33-36)S1 (30-31)TIV4 (130-133)S14 (232-245)S5 (78-87)S3 (65-67)TVIII3 (59-62)S7 (103-109)S4 (69-70)TIV2 (70-73)EMPTYTIV3 (72-75)S6 (93-99)TI3 (88-91)S9 (126-129)S8 (115-121)TII3 (122-125)S11 (141-149)TVIII5 (150-153)TI5 (153-156)TIV5 (163-166)AH2 (183-186)TI6 (158-161)TI7 (171-174)TIV7 (172-175)3H2 (180-182)TI8 (174-177)3H3 (224-226)TIV8 (205-208)TI9 (206-209)S13 (210-220)S12 (192-205)S10 (135-136)TI4 (137-140)TII2 (110-113)Updating...
connected with : NaN
molecule tags Electron transport
publication title Structure of Sr-substituted photosystem II at 2.1 A resolution and its implications in the mechanism of water oxidation
pubmed doi rcsb
molecule keywords Photosystem Q(B) protein
total genus 53
structure length 244
sequence length 244
chains with identical sequence o
ec nomenclature
pdb deposition date 2012-12-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
O PF01716 MSP Manganese-stabilising protein / photosystem II polypeptide
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 4il6O01
3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domain 4il6O02
5G39A 3WU2O 5GTIO 3JCUO 4PJ0O 3A0HO 5B5EO 3KZIO 4IL6O 5E79O 3A0BO 5B66O 5G3AA 5KAFO 1S5LO 5KAIO 5G38A 2AXTO 4UB6O 5TISO 5H2FO 5GTHO 4UB8O
chains in the Genus database with same CATH superfamily
3AA0B 3GP6A 5D5DA 3WI5A 4C69X 1PRNA 4GCSA 2R4NA 3HOEA 4AZLA 4C4VA 4D5UA 2K0LA 2Y0HA 4K3BA 4O3ZA 3UPGA 5GTIO 3JTYA 3LK2B 4N59A 4D65A 1T16A 3JCUO 4FZLA 4JFBA 3DA4A 2K4TA 4Z3TA 1ZHTA 2YPVA 3AAEB 4KRAA 5GV0A 1Q9GA 4FUVA 4LSHA 4PUXA 3AA6B 2FGRA 5G3AA 2KDYA 1PHOA 5DL8A 4O3YA 5G26A 1OPFA 3LK42 5KAIO 2KZ7B 2M06A 3AAEA 5PRNA 4AYID 7PRNA 1BT9A 1GFQA 4UB6O 2IWWA 3T20A 2GE4A 1H6S1 5TISO 5DL5A 3VZWX 4C4VB 2Y0LA 3SZDA 4FRXA 4FZNA 1ZHWA 2IWVA 5H2FO 3PQUA 4O4UA 1ZHZA 3A2SX 4N58A 4FZMA 4FT6A 2ZFGA 2QTKA 2O4VA 4E1TA 2KZ7A 4LSEA 4RLCA 1BH3A 2F1VA 3K19A 3O0EA 1GFMA 2XG6A 3NSGA 3WU2O 2ODJA 3VE2A 3DA3A 2XE1A 1THQA 2WJRA 3A0HO 5B5EO 1ZHYA 3DWOX 4FOZA 5ADXK 1MM4A 5E79O 5FVNA 4E1SA 5AFUK 5B66O 1GFPA 2R4LA 4N74A 1OSMA 4RJXA 3VZUX 3LK41 2JQYA 4O49A 4FQEA 4FRTA 2KXPA 2Y7SA 1QJ9A 1ZHXA 3EMNX 3LK3B 1MPFA 3AA1A 5ADXL 4GCPA 5AFUL 5EE2A 2WVPA 3HOLA 4N75A 3QRCA 4KR8A 1E54A 2XE5A 4GF4A 4F4BA 1HXUA 4GCQA 2XTRA 3PGRA 3DZMA 3WI4A 2X9KA 4LSIA 1HXXA 3G7GA 4AYEC 1P4TA 3LK3A 2N2LA 4K3CA 2YNKA 3PRNA 5G39A 3UAQA 2Y0KA 3NJTA 1T1LA 5T5FA 4XNKA 3V8UA 2R4OA 1QJPA 4RLBA 2J4UP 4XNLA 2KXPB 2M07A 2ZLDA 4G75A 4IL6O 5DL6A 3AA1B 3A0BO 3VE1A 4C00A 1IZNB 4JCHA 3PQSA 4RL9A 2R89A 3PORA 2PRNA 4AKRB 2MHLA 3RBHA 3UU2A 2R4PA 2OMFA 2N2MA 2AXTO 5IYUA 3POQA 4FMSA 4GHBA 1GFNA 4FSPA 4RJWA 3T24A 1QJ8A 3BRZA 1IZNA 3PF1A 3AA7B 2LHFA 4AKMA 3DWNA 4AYNA 4AKRA 4KR4A 4CTDA 4UB8O 3BS0A 3PGUA 2W81C 4AYMC 3TZGA 4G76A 4PR7A 2MNHA 1MM5A 2R8AA 2F1CX 2R88A 2X27X 4U9CA 3SYBA 4O4XA 3AA7A 3SYSA 2J1NA 2WJQA 4O3XB 3HW9A 4PJ0O 3SZVA 4D64A 3KVDD 8PRNA 3AA0A 2Y2XA 4LSFA 3KZIO 1HXTA 2XE3A 4AUIA 3BRYA 2ERVA 2W80C 3HWBA 4FESA 3FYXA 3AAAB 2F1TA 1YS5A 2KC0A 3LK2A 3QRAA 4AYDC 4AFKA 5KAFO 1GFOA 1S5LO 3SY7A 5G38A 4O3WA 1BXWA 3POUA 4B61A 4BUMX 4QQ1A 5JDPA 3POXA 1G90A 5DL7A 3AA6A 3C5OA 3PGSA 3AAAA 2LFUA 2PORA 2XE2A 4FSOA 2JMMA 3VY9X 1Q9FA 6PRNA 2FGQX 3SY9A 2XTQA 3T0SA 5GTHO 1ORMA 3VY8X 3VZTX 2XMXA
chains in the Genus database with same CATH topology
5G39A 3WU2O 5GTIO 3JCUO 4PJ0O 3A0HO 5B5EO 3KZIO 4IL6O 5E79O 3A0BO 5B66O 5G3AA 5KAFO 1S5LO 5KAIO 5G38A 2AXTO 4UB6O 5TISO 5H2FO 5GTHO 4UB8O
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5G39 A;  3WU2 O;  5GTI O;  3JCU O;  4PJ0 O;  3A0H O;  5B5E O;  3KZI O;  4IL6 O;  5E79 O;  3A0B O;  5B66 O;  5G3A A;  5KAF O;  1S5L O;  5KAI O;  5G38 A;  2AXT O;  4UB6 O;  5TIS O;  5H2F O;  5GTH O;  4UB8 O; 
#chains in the Genus database with same CATH topology
 3AA0 B;  3GP6 A;  5D5D A;  3WI5 A;  4C69 X;  1PRN A;  4GCS A;  2R4N A;  3HOE A;  4AZL A;  4C4V A;  4D5U A;  2K0L A;  2Y0H A;  4K3B A;  4O3Z A;  3UPG A;  5GTI O;  3JTY A;  3LK2 B;  4N59 A;  4D65 A;  1T16 A;  3JCU O;  4FZL A;  4JFB A;  3DA4 A;  2K4T A;  4Z3T A;  1ZHT A;  2YPV A;  3AAE B;  4KRA A;  5GV0 A;  1Q9G A;  4FUV A;  4LSH A;  4PUX A;  3AA6 B;  2FGR A;  5G3A A;  2KDY A;  1PHO A;  5DL8 A;  4O3Y A;  5G26 A;  1OPF A;  3LK4 2;  5KAI O;  2KZ7 B;  2M06 A;  3AAE A;  5PRN A;  4AYI D;  7PRN A;  1BT9 A;  1GFQ A;  4UB6 O;  2IWW A;  3T20 A;  2GE4 A;  1H6S 1;  5TIS O;  5DL5 A;  3VZW X;  4C4V B;  2Y0L A;  3SZD A;  4FRX A;  4FZN A;  1ZHW A;  2IWV A;  5H2F O;  3PQU A;  4O4U A;  1ZHZ A;  3A2S X;  4N58 A;  4FZM A;  4FT6 A;  2ZFG A;  2QTK A;  2O4V A;  4E1T A;  2KZ7 A;  4LSE A;  4RLC A;  1BH3 A;  2F1V A;  3K19 A;  3O0E A;  1GFM A;  2XG6 A;  3NSG A;  3WU2 O;  2ODJ A;  3VE2 A;  3DA3 A;  2XE1 A;  1THQ A;  2WJR A;  3A0H O;  5B5E O;  1ZHY A;  3DWO X;  4FOZ A;  5ADX K;  1MM4 A;  5E79 O;  5FVN A;  4E1S A;  5AFU K;  5B66 O;  1GFP A;  2R4L A;  4N74 A;  1OSM A;  4RJX A;  3VZU X;  3LK4 1;  2JQY A;  4O49 A;  4FQE A;  4FRT A;  2KXP A;  2Y7S A;  1QJ9 A;  1ZHX A;  3EMN X;  3LK3 B;  1MPF A;  3AA1 A;  5ADX L;  4GCP A;  5AFU L;  5EE2 A;  2WVP A;  3HOL A;  4N75 A;  3QRC A;  4KR8 A;  1E54 A;  2XE5 A;  4GF4 A;  4F4B A;  1HXU A;  4GCQ A;  2XTR A;  3PGR A;  3DZM A;  3WI4 A;  2X9K A;  4LSI A;  1HXX A;  3G7G A;  4AYE C;  1P4T A;  3LK3 A;  2N2L A;  4K3C A;  2YNK A;  3PRN A;  5G39 A;  3UAQ A;  2Y0K A;  3NJT A;  1T1L A;  5T5F A;  4XNK A;  3V8U A;  2R4O A;  1QJP A;  4RLB A;  2J4U P;  4XNL A;  2KXP B;  2M07 A;  2ZLD A;  4G75 A;  4IL6 O;  5DL6 A;  3AA1 B;  3A0B O;  3VE1 A;  4C00 A;  1IZN B;  4JCH A;  3PQS A;  4RL9 A;  2R89 A;  3POR A;  2PRN A;  4AKR B;  2MHL A;  3RBH A;  3UU2 A;  2R4P A;  2OMF A;  2N2M A;  2AXT O;  5IYU A;  3POQ A;  4FMS A;  4GHB A;  1GFN A;  4FSP A;  4RJW A;  3T24 A;  1QJ8 A;  3BRZ A;  1IZN A;  3PF1 A;  3AA7 B;  2LHF A;  4AKM A;  3DWN A;  4AYN A;  4AKR A;  4KR4 A;  4CTD A;  4UB8 O;  3BS0 A;  3PGU A;  2W81 C;  4AYM C;  3TZG A;  4G76 A;  4PR7 A;  2MNH A;  1MM5 A;  2R8A A;  2F1C X;  2R88 A;  2X27 X;  4U9C A;  3SYB A;  4O4X A;  3AA7 A;  3SYS A;  2J1N A;  2WJQ A;  4O3X B;  3HW9 A;  4PJ0 O;  3SZV A;  4D64 A;  3KVD D;  8PRN A;  3AA0 A;  2Y2X A;  4LSF A;  3KZI O;  1HXT A;  2XE3 A;  4AUI A;  3BRY A;  2ERV A;  2W80 C;  3HWB A;  4FES A;  3FYX A;  3AAA B;  2F1T A;  1YS5 A;  2KC0 A;  3LK2 A;  3QRA A;  4AYD C;  4AFK A;  5KAF O;  1GFO A;  1S5L O;  3SY7 A;  5G38 A;  4O3W A;  1BXW A;  3POU A;  4B61 A;  4BUM X;  4QQ1 A;  5JDP A;  3POX A;  1G90 A;  5DL7 A;  3AA6 A;  3C5O A;  3PGS A;  3AAA A;  2LFU A;  2POR A;  2XE2 A;  4FSO A;  2JMM A;  3VY9 X;  1Q9F A;  6PRN A;  2FGQ X;  3SY9 A;  2XTQ A;  3T0S A;  5GTH O;  1ORM A;  3VY8 X;  3VZT X;  2XMX A; 
#chains in the Genus database with same CATH homology
 5G39 A;  3WU2 O;  5GTI O;  3JCU O;  4PJ0 O;  3A0H O;  5B5E O;  3KZI O;  4IL6 O;  5E79 O;  3A0B O;  5B66 O;  5G3A A;  5KAF O;  1S5L O;  5KAI O;  5G38 A;  2AXT O;  4UB6 O;  5TIS O;  5H2F O;  5GTH O;  4UB8 O; 
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