4KRA | Genus

Total Genus 67

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	67
sequence length	341
structure length	341
Chain Sequence	MEIYNKDGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Membrane protein
source organism	Salmonella enterica subsp. enterica serovar typhi
publication title	Salmonella typhi OmpF complex with Ciprofloxacin rcsb
molecule keywords	Outer membrane protein F
total genus	67
structure length	341
sequence length	341
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2013-05-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00267	Porin_1	Gram-negative porin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	4kraA00

1GFOA 2O4VA 2K4TA 4GCQA 5DL8A 3T20A 2Y0LA 2XE3A 2XE1A 4FSPA 2PRNA 2J1NA 1E54A 4JFBA 3POXA 4FT6A 3SZVA 4RJWA 2ODJA 5DL6A 2XE5A 3FYXA 1BT9A 1PRNA 2FGQX 3HWBA 4LSEA 3VZWX 2FGRA 3POUA 3O0EA 1PHOA 3UU2A 3VY9X 2J4UP 1H6S1 2Y2XA 4KRAA 2XE2A 4FMSA 3K19A 6PRNA 2QTKA 2Y0KA 4BUMX 4FRXA 3VY8X 3WI4A 4FOZA 3EMNX 4RJXA 3SYSA 3POQA 1HXUA 3SY9A 4FSOA 4GCPA 4AUIA 4KR4A 3SYBA 1OSMA 3SZDA 1OPFA 4GCSA 3NSGA 4KR8A 4C69X 2Y0HA 7PRNA 5FVNA 5PRNA 1BH3A 3A2SX 5DL5A 1GFNA 2ZFGA 3T24A 3PORA 4LSFA 5JDPA 3WI5A 4D5UA 1HXTA 5DL7A 4FRTA 2ZLDA 4LSHA 1HXXA 4D64A 3SY7A 3HW9A 1GFPA 8PRNA 1GFQA 3VZUX 2OMFA 3VZTX 3PRNA 1MPFA 3UPGA 2XG6A 1GFMA 4LSIA 2PORA 3JTYA 3T0SA 4D65A
chains in the Genus database with same CATH superfamily

5GTHO 2R4LA 1GFOA 2O4VA 3VE1A 2XTQA 3PF1A 5ADXK 5B5EO 2K4TA 3LK2A 4GCQA 1THQA 4K3BA 2Y0LA 5DL8A 4RLCA 2XE3A 5G38A 4E1SA 2XE1A 4N74A 2R8AA 1ORMA 4FSPA 2PRNA 4C4VA 5B66O 2J1NA 1E54A 4JFBA 4C00A 3AA6A 4FZNA 3WU2O 2XMXA 3A0BO 3DA4A 1MM4A 3AA7A 3DWNA 3POXA 4FT6A 4FZMA 4GF4A 4RJWA 4PUXA 5KAIO 3SZVA 5TISO 4AKMA 4PJ0O 2ODJA 5DL6A 2XE5A 4E1TA 2MNHA 3FYXA 3RBHA 1BT9A 3QRCA 4O3YA 1PRNA 4UB6O 3AA1A 2FGQX 3HWBA 4LSEA 4XNLA 3VZWX 2FGRA 3A0HO 3LK42 3POUA 3O0EA 5KAFO 2WJQA 3BS0A 2R88A 3G7GA 1PHOA 2F1CX 4N59A 4O49A 2F1VA 5G26A 1S5LO 2X27X 3UU2A 4N75A 3DWOX 3VY9X 5ADXL 2J4UP 1H6S1 3QRAA 2Y2XA 3AAAB 3NJTA 4GHBA 4KRAA 2XE2A 4N58A 4FMSA 3PGUA 3K19A 6PRNA 5GTIO 5G39A 4AYEC 3AA0A 4O3ZA 4RL9A 2QTKA 3AAEB 2R4NA 1IZNB 4G76A 2YPVA 2R89A 5AFUL 2Y0KA 4AKRB 2R4OA 1Q9FA 4O4UA 4FRXA 4XNKA 3VY8X 4BUMX 1T16A 2Y7SA 2YNKA 3BRYA 3LK41 4FOZA 2KC0A 3WI4A 4AYDC 3KVDD 2KZ7B 2AXTO 2W80C 4AFKA 2M07A 4AYMC 2ERVA 2IWWA 5T5FA 2N2LA 3EMNX 1QJ9A 4RJXA 1QJPA 3PGSA 3LK3A 2KXPA 3DA3A 4G75A 4JCHA 5G3AA 3SYSA 1ZHZA 3POQA 1HXUA 3SY9A 2WJRA 3C5OA 3HOEA 4FSOA 5D5DA 2JMMA 4GCPA 4AUIA 3LK2B 2GE4A 3PGRA 2X9KA 4O3WA 4KR4A 1Q9GA 4IL6O 1OSMA 3SYBA 3SZDA 5E79O 4AYID 4FESA 4C4VB 1OPFA 4GCSA 3UAQA 2IWVA 3NSGA 4KR8A 3AA6B 4C69X 2Y0HA 7PRNA 5FVNA 1YS5A 3AA7B 5PRNA 1BH3A 4B61A 3A2SX 5DL5A 1GFNA 2N2MA 4U9CA 4F4BA 4PR7A 2W81C 2ZFGA 5GV0A 3T24A 1G90A 3PORA 1MM5A 3AA1B 2M06A 1QJ8A 2JQYA 4LSFA 1ZHXA 4FQEA 3WI5A 1BXWA 1HXTA 2K0LA 5DL7A 4D5UA 4FZLA 5JDPA 2KDYA 4O3XB 4FRTA 2ZLDA 4LSHA 2LFUA 2R4PA 3JCUO 1HXXA 2XTRA 3GP6A 3VE2A 4AYNA 2WVPA 3AAAA 2MHLA 4D64A 4Z3TA 4UB8O 4K3CA 3AA0B 3BRZA 3T20A 3PQUA 3SY7A 4CTDA 2LHFA 2F1TA 3HW9A 3V8UA 3AAEA 1ZHYA 1GFPA 1IZNA 5EE2A 5AFUK 8PRNA 1GFQA 3DZMA 2OMFA 3KZIO 4FUVA 4O4XA 4QQ1A 3VZUX 3VZTX 4AKRA 5IYUA 3PRNA 5H2FO 1MPFA 2KZ7A 3UPGA 2XG6A 1GFMA 4AZLA 1P4TA 1ZHWA 3TZGA 4LSIA 2PORA 2KXPB 3JTYA 3HOLA 3LK3B 3T0SA 1ZHTA 1T1LA 4RLBA 4D65A 3PQSA
chains in the Genus database with same CATH topology

1GFOA 2O4VA 3VE1A 2XTQA 5ADXK 2K4TA 3LK2A 4GCQA 1THQA 5DL8A 2Y0LA 3T20A 4RLCA 2XE3A 4E1SA 2XE1A 1ORMA 4FSPA 2PRNA 2J1NA 1E54A 4JFBA 3AA6A 4FZNA 2XMXA 4GHBA 3DA4A 1MM4A 3AA7A 3POXA 4FT6A 4FZMA 4GF4A 3SZVA 4RJWA 4PUXA 4AKMA 2ODJA 5DL6A 2XE5A 4E1TA 2MNHA 3FYXA 3RBHA 1BT9A 3QRCA 4O3YA 1PRNA 3AA1A 2FGQX 3HWBA 4LSEA 4XNLA 3VZWX 2FGRA 3LK42 3POUA 3O0EA 4N59A 4O49A 5G26A 3G7GA 1PHOA 3UU2A 2F1VA 2X27X 5ADXL 3VY9X 2J4UP 1H6S1 3QRAA 2Y2XA 3AAAB 4KRAA 4N58A 2XE2A 4FMSA 3K19A 6PRNA 4AYEC 3AA0A 4O3ZA 4RL9A 2QTKA 3AAEB 1IZNB 4G76A 2YPVA 5AFUL 2Y0KA 4AKRB 4XNKA 1Q9FA 4O4UA 4FRXA 3VY8X 4BUMX 4D65A 2YNKA 2Y7SA 3LK41 4FOZA 3WI4A 2KC0A 4AYDC 3KVDD 2KZ7B 2W80C 4AYMC 4AFKA 2M07A 2ERVA 5T5FA 2N2LA 3EMNX 1QJ9A 4RJXA 1QJPA 3LK3A 2KXPA 3DA3A 4G75A 4JCHA 3SYSA 1ZHZA 3POQA 1HXUA 3SY9A 5D5DA 3C5OA 3HOEA 4FSOA 2JMMA 4GCPA 4AUIA 3LK2B 2GE4A 4O3WA 4KR4A 1Q9GA 3SYBA 1OSMA 3SZDA 4AYID 4FESA 1OPFA 4GCSA 3UAQA 3NSGA 4KR8A 3AA6B 4C69X 2Y0HA 7PRNA 5FVNA 1YS5A 3AA7B 5PRNA 1BH3A 4B61A 3A2SX 5DL5A 1GFNA 2N2MA 4U9CA 4F4BA 2W81C 2ZFGA 5GV0A 3T24A 1G90A 3PORA 1MM5A 3AA1B 2M06A 1QJ8A 4LSFA 1ZHXA 5JDPA 3WI5A 1BXWA 1HXTA 2K0LA 5DL7A 4D5UA 4FZLA 2KDYA 4O3XB 4FRTA 2ZLDA 4LSHA 2LFUA 1HXXA 2XTRA 3GP6A 3VE2A 4AYNA 3AAAA 2MHLA 4D64A 4Z3TA 3AA0B 3PQUA 3SY7A 2LHFA 2F1TA 3HW9A 3V8UA 3AAEA 1ZHYA 1GFPA 1IZNA 5EE2A 5AFUK 8PRNA 1GFQA 4QQ1A 2OMFA 4FUVA 3VZUX 4O4XA 3VZTX 4AKRA 5IYUA 3PRNA 1MPFA 2KZ7A 3UPGA 2XG6A 1GFMA 4AZLA 1P4TA 1ZHWA 3TZGA 4LSIA 2PORA 2KXPB 3JTYA 3HOLA 3LK3B 3T0SA 1ZHTA 4RLBA 3PQSA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1GFO A;  2O4V A;  2K4T A;  4GCQ A;  5DL8 A;  3T20 A;  2Y0L A;  2XE3 A;  2XE1 A;  4FSP A;  2PRN A;  2J1N A;  1E54 A;  4JFB A;  3POX A;  4FT6 A;  3SZV A;  4RJW A;  2ODJ A;  5DL6 A;  2XE5 A;  3FYX A;  1BT9 A;  1PRN A;  2FGQ X;  3HWB A;  4LSE A;  3VZW X;  2FGR A;  3POU A;  3O0E A;  1PHO A;  3UU2 A;  3VY9 X;  2J4U P;  1H6S 1;  2Y2X A;  4KRA A;  2XE2 A;  4FMS A;  3K19 A;  6PRN A;  2QTK A;  2Y0K A;  4BUM X;  4FRX A;  3VY8 X;  3WI4 A;  4FOZ A;  3EMN X;  4RJX A;  3SYS A;  3POQ A;  1HXU A;  3SY9 A;  4FSO A;  4GCP A;  4AUI A;  4KR4 A;  3SYB A;  1OSM A;  3SZD A;  1OPF A;  4GCS A;  3NSG A;  4KR8 A;  4C69 X;  2Y0H A;  7PRN A;  5FVN A;  5PRN A;  1BH3 A;  3A2S X;  5DL5 A;  1GFN A;  2ZFG A;  3T24 A;  3POR A;  4LSF A;  5JDP A;  3WI5 A;  4D5U A;  1HXT A;  5DL7 A;  4FRT A;  2ZLD A;  4LSH A;  1HXX A;  4D64 A;  3SY7 A;  3HW9 A;  1GFP A;  8PRN A;  1GFQ A;  3VZU X;  2OMF A;  3VZT X;  3PRN A;  1MPF A;  3UPG A;  2XG6 A;  1GFM A;  4LSI A;  2POR A;  3JTY A;  3T0S A;  4D65 A; 
#chains in the Genus database with same CATH topology
 5GTH O;  2R4L A;  1GFO A;  2O4V A;  3VE1 A;  2XTQ A;  3PF1 A;  5ADX K;  5B5E O;  2K4T A;  3LK2 A;  4GCQ A;  1THQ A;  4K3B A;  2Y0L A;  5DL8 A;  4RLC A;  2XE3 A;  5G38 A;  4E1S A;  2XE1 A;  4N74 A;  2R8A A;  1ORM A;  4FSP A;  2PRN A;  4C4V A;  5B66 O;  2J1N A;  1E54 A;  4JFB A;  4C00 A;  3AA6 A;  4FZN A;  3WU2 O;  2XMX A;  3A0B O;  3DA4 A;  1MM4 A;  3AA7 A;  3DWN A;  3POX A;  4FT6 A;  4FZM A;  4GF4 A;  4RJW A;  4PUX A;  5KAI O;  3SZV A;  5TIS O;  4AKM A;  4PJ0 O;  2ODJ A;  5DL6 A;  2XE5 A;  4E1T A;  2MNH A;  3FYX A;  3RBH A;  1BT9 A;  3QRC A;  4O3Y A;  1PRN A;  4UB6 O;  3AA1 A;  2FGQ X;  3HWB A;  4LSE A;  4XNL A;  3VZW X;  2FGR A;  3A0H O;  3LK4 2;  3POU A;  3O0E A;  5KAF O;  2WJQ A;  3BS0 A;  2R88 A;  3G7G A;  1PHO A;  2F1C X;  4N59 A;  4O49 A;  2F1V A;  5G26 A;  1S5L O;  2X27 X;  3UU2 A;  4N75 A;  3DWO X;  3VY9 X;  5ADX L;  2J4U P;  1H6S 1;  3QRA A;  2Y2X A;  3AAA B;  3NJT A;  4GHB A;  4KRA A;  2XE2 A;  4N58 A;  4FMS A;  3PGU A;  3K19 A;  6PRN A;  5GTI O;  5G39 A;  4AYE C;  3AA0 A;  4O3Z A;  4RL9 A;  2QTK A;  3AAE B;  2R4N A;  1IZN B;  4G76 A;  2YPV A;  2R89 A;  5AFU L;  2Y0K A;  4AKR B;  2R4O A;  1Q9F A;  4O4U A;  4FRX A;  4XNK A;  3VY8 X;  4BUM X;  1T16 A;  2Y7S A;  2YNK A;  3BRY A;  3LK4 1;  4FOZ A;  2KC0 A;  3WI4 A;  4AYD C;  3KVD D;  2KZ7 B;  2AXT O;  2W80 C;  4AFK A;  2M07 A;  4AYM C;  2ERV A;  2IWW A;  5T5F A;  2N2L A;  3EMN X;  1QJ9 A;  4RJX A;  1QJP A;  3PGS A;  3LK3 A;  2KXP A;  3DA3 A;  4G75 A;  4JCH A;  5G3A A;  3SYS A;  1ZHZ A;  3POQ A;  1HXU A;  3SY9 A;  2WJR A;  3C5O A;  3HOE A;  4FSO A;  5D5D A;  2JMM A;  4GCP A;  4AUI A;  3LK2 B;  2GE4 A;  3PGR A;  2X9K A;  4O3W A;  4KR4 A;  1Q9G A;  4IL6 O;  1OSM A;  3SYB A;  3SZD A;  5E79 O;  4AYI D;  4FES A;  4C4V B;  1OPF A;  4GCS A;  3UAQ A;  2IWV A;  3NSG A;  4KR8 A;  3AA6 B;  4C69 X;  2Y0H A;  7PRN A;  5FVN A;  1YS5 A;  3AA7 B;  5PRN A;  1BH3 A;  4B61 A;  3A2S X;  5DL5 A;  1GFN A;  2N2M A;  4U9C A;  4F4B A;  4PR7 A;  2W81 C;  2ZFG A;  5GV0 A;  3T24 A;  1G90 A;  3POR A;  1MM5 A;  3AA1 B;  2M06 A;  1QJ8 A;  2JQY A;  4LSF A;  1ZHX A;  4FQE A;  3WI5 A;  1BXW A;  1HXT A;  2K0L A;  5DL7 A;  4D5U A;  4FZL A;  5JDP A;  2KDY A;  4O3X B;  4FRT A;  2ZLD A;  4LSH A;  2LFU A;  2R4P A;  3JCU O;  1HXX A;  2XTR A;  3GP6 A;  3VE2 A;  4AYN A;  2WVP A;  3AAA A;  2MHL A;  4D64 A;  4Z3T A;  4UB8 O;  4K3C A;  3AA0 B;  3BRZ A;  3T20 A;  3PQU A;  3SY7 A;  4CTD A;  2LHF A;  2F1T A;  3HW9 A;  3V8U A;  3AAE A;  1ZHY A;  1GFP A;  1IZN A;  5EE2 A;  5AFU K;  8PRN A;  1GFQ A;  3DZM A;  2OMF A;  3KZI O;  4FUV A;  4O4X A;  4QQ1 A;  3VZU X;  3VZT X;  4AKR A;  5IYU A;  3PRN A;  5H2F O;  1MPF A;  2KZ7 A;  3UPG A;  2XG6 A;  1GFM A;  4AZL A;  1P4T A;  1ZHW A;  3TZG A;  4LSI A;  2POR A;  2KXP B;  3JTY A;  3HOL A;  3LK3 B;  3T0S A;  1ZHT A;  1T1L A;  4RLB A;  4D65 A;  3PQS A; 
#chains in the Genus database with same CATH homology
 1GFO A;  2O4V A;  3VE1 A;  2XTQ A;  5ADX K;  2K4T A;  3LK2 A;  4GCQ A;  1THQ A;  5DL8 A;  2Y0L A;  3T20 A;  4RLC A;  2XE3 A;  4E1S A;  2XE1 A;  1ORM A;  4FSP A;  2PRN A;  2J1N A;  1E54 A;  4JFB A;  3AA6 A;  4FZN A;  2XMX A;  4GHB A;  3DA4 A;  1MM4 A;  3AA7 A;  3POX A;  4FT6 A;  4FZM A;  4GF4 A;  3SZV A;  4RJW A;  4PUX A;  4AKM A;  2ODJ A;  5DL6 A;  2XE5 A;  4E1T A;  2MNH A;  3FYX A;  3RBH A;  1BT9 A;  3QRC A;  4O3Y A;  1PRN A;  3AA1 A;  2FGQ X;  3HWB A;  4LSE A;  4XNL A;  3VZW X;  2FGR A;  3LK4 2;  3POU A;  3O0E A;  4N59 A;  4O49 A;  5G26 A;  3G7G A;  1PHO A;  3UU2 A;  2F1V A;  2X27 X;  5ADX L;  3VY9 X;  2J4U P;  1H6S 1;  3QRA A;  2Y2X A;  3AAA B;  4KRA A;  4N58 A;  2XE2 A;  4FMS A;  3K19 A;  6PRN A;  4AYE C;  3AA0 A;  4O3Z A;  4RL9 A;  2QTK A;  3AAE B;  1IZN B;  4G76 A;  2YPV A;  5AFU L;  2Y0K A;  4AKR B;  4XNK A;  1Q9F A;  4O4U A;  4FRX A;  3VY8 X;  4BUM X;  4D65 A;  2YNK A;  2Y7S A;  3LK4 1;  4FOZ A;  3WI4 A;  2KC0 A;  4AYD C;  3KVD D;  2KZ7 B;  2W80 C;  4AYM C;  4AFK A;  2M07 A;  2ERV A;  5T5F A;  2N2L A;  3EMN X;  1QJ9 A;  4RJX A;  1QJP A;  3LK3 A;  2KXP A;  3DA3 A;  4G75 A;  4JCH A;  3SYS A;  1ZHZ A;  3POQ A;  1HXU A;  3SY9 A;  5D5D A;  3C5O A;  3HOE A;  4FSO A;  2JMM A;  4GCP A;  4AUI A;  3LK2 B;  2GE4 A;  4O3W A;  4KR4 A;  1Q9G A;  3SYB A;  1OSM A;  3SZD A;  4AYI D;  4FES A;  1OPF A;  4GCS A;  3UAQ A;  3NSG A;  4KR8 A;  3AA6 B;  4C69 X;  2Y0H A;  7PRN A;  5FVN A;  1YS5 A;  3AA7 B;  5PRN A;  1BH3 A;  4B61 A;  3A2S X;  5DL5 A;  1GFN A;  2N2M A;  4U9C A;  4F4B A;  2W81 C;  2ZFG A;  5GV0 A;  3T24 A;  1G90 A;  3POR A;  1MM5 A;  3AA1 B;  2M06 A;  1QJ8 A;  4LSF A;  1ZHX A;  5JDP A;  3WI5 A;  1BXW A;  1HXT A;  2K0L A;  5DL7 A;  4D5U A;  4FZL A;  2KDY A;  4O3X B;  4FRT A;  2ZLD A;  4LSH A;  2LFU A;  1HXX A;  2XTR A;  3GP6 A;  3VE2 A;  4AYN A;  3AAA A;  2MHL A;  4D64 A;  4Z3T A;  3AA0 B;  3PQU A;  3SY7 A;  2LHF A;  2F1T A;  3HW9 A;  3V8U A;  3AAE A;  1ZHY A;  1GFP A;  1IZN A;  5EE2 A;  5AFU K;  8PRN A;  1GFQ A;  4QQ1 A;  2OMF A;  4FUV A;  3VZU X;  4O4X A;  3VZT X;  4AKR A;  5IYU A;  3PRN A;  1MPF A;  2KZ7 A;  3UPG A;  2XG6 A;  1GFM A;  4AZL A;  1P4T A;  1ZHW A;  3TZG A;  4LSI A;  2POR A;  2KXP B;  3JTY A;  3HOL A;  3LK3 B;  3T0S A;  1ZHT A;  4RLB A;  3PQS A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

4KRAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations