4LSIA

Ion selectivity of ompf porin soaked in 0.3m kbr
Total Genus 100
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
100
sequence length
334
structure length
334
Chain Sequence
DGNKVDLYGKAVGLHYFSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVYQF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
Updating...
connected with : NaN
molecule tags Transport protein
source organism Escherichia coli
publication title A structural study of ion permeation in OmpF porin from anomalous X-ray diffraction and molecular dynamics simulations.
pubmed doi rcsb
molecule keywords Outer membrane protein F
total genus 100
structure length 334
sequence length 334
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 4lsiA00
3SY7A 2K4TA 2J4UP 1GFOA 4D5UA 3PRNA 1GFNA 4FT6A 3JTYA 3POXA 5JDPA 1E54A 5DL7A 4D64A 1GFPA 4GCPA 3EMNX 1GFMA 3PORA 1HXUA 3T0SA 1H6S1 3VZTX 3HW9A 4LSEA 8PRNA 1HXTA 4FSPA 3T20A 2QTKA 5FVNA 4JFBA 2XE2A 3FYXA 4LSIA 3POQA 2Y0KA 3WI5A 4FRTA 5DL6A 1HXXA 2OMFA 2ZFGA 3WI4A 4KR8A 2J1NA 4LSFA 2Y2XA 7PRNA 3K19A 2PORA 3NSGA 4FRXA 2PRNA 4KR4A 4RJXA 4FSOA 5DL5A 5DL8A 3SZDA 3SYBA 3SZVA 3A2SX 1BH3A 1MPFA 3UU2A 2FGRA 4D65A 2Y0LA 3T24A 1PHOA 2ZLDA 6PRNA 3UPGA 4AUIA 1PRNA 3SY9A 3VZWX 2ODJA 2Y0HA 3VY8X 4GCQA 1OSMA 3HWBA 1BT9A 2XE3A 4RJWA 1OPFA 2XE1A 4C69X 2O4VA 4GCSA 4FOZA 5PRNA 4LSHA 3VZUX 2FGQX 4BUMX 3POUA 4KRAA 3O0EA 2XE5A 1GFQA 3VY9X 3SYSA 4FMSA 2XG6A
chains in the Genus database with same CATH superfamily
5T5FA 2KZ7A 3PQUA 4FQEA 3SY7A 4AZLA 5IYUA 2K4TA 3VE2A 2J4UP 1GFOA 4D5UA 3PRNA 1GFNA 4QQ1A 2MHLA 2R89A 4K3CA 5B66O 1IZNB 5GTHO 4IL6O 3QRAA 4FESA 1IZNA 4O4UA 2AXTO 5B5EO 2N2LA 2KXPA 4FT6A 3JTYA 3POXA 5JDPA 1E54A 3AA7A 2KC0A 4PR7A 2KDYA 5DL7A 4O4XA 4O3WA 4D64A 1GFPA 2LHFA 3BS0A 4GCPA 5KAFO 2F1TA 1THQA 3EMNX 1GFMA 3PORA 1HXUA 4XNKA 4O3YA 4B61A 3T0SA 4AKMA 5G3AA 1BXWA 1H6S1 2R4PA 3VZTX 3NJTA 4AYNA 3HW9A 4LSEA 8PRNA 2M07A 2R4LA 1HXTA 4XNLA 4E1TA 4FSPA 3C5OA 3T20A 2QTKA 5FVNA 1ZHXA 5G26A 4N75A 5G39A 2XTRA 3PQSA 4JFBA 2XE2A 5KAIO 3TZGA 3FYXA 4O3XB 3DWNA 4LSIA 3LK42 4FUVA 3POQA 1ZHWA 2KXPB 4O49A 1P4TA 2Y0KA 3WI5A 4FRTA 4U9CA 3DA4A 1G90A 3AA7B 3AAAB 2WJQA 3AAEB 2X9KA 4PJ0O 5DL6A 5E79O 2W80C 3AAAA 3AAEA 1HXXA 4CTDA 1T16A 2OMFA 1QJ9A 2ZFGA 2J1NA 3PGUA 4KR8A 3PGRA 3A0HO 4LSFA 3WI4A 4F4BA 3RBHA 2Y2XA 2XMXA 7PRNA 4C4VA 1QJ8A 3K19A 1Q9GA 2PORA 2MNHA 5GV0A 3NSGA 4FRXA 4FZMA 2PRNA 5G38A 5D5DA 4N74A 4E1SA 2Y7SA 4KR4A 4K3BA 4FMSA 4RJXA 4RLBA 2YPVA 2JMMA 3HOLA 4FSOA 1Q9FA 4FZLA 3LK3B 1MM5A 5DL5A 5DL8A 2W81C 3SZDA 3V8UA 3LK3A 3SYBA 5ADXL 1ZHZA 3SZVA 3A2SX 1T1LA 2WJRA 4PUXA 1BH3A 3AA6B 1MPFA 4N59A 3AA6A 4RL9A 2WVPA 1ORMA 3LK41 4AYMC 4N58A 2FGRA 3UU2A 4G76A 4D65A 2Y0LA 2K0LA 3T24A 1PHOA 2ZLDA 3DZMA 3SYSA 2GE4A 3G7GA 4UB8O 2F1VA 6PRNA 3UPGA 4FZNA 2M06A 4O3ZA 1QJPA 2XTQA 3PF1A 4AUIA 1PRNA 2N2MA 4UB6O 2R8AA 3SY9A 3QRCA 3UAQA 3VZWX 5AFUK 2ODJA 4RLCA 4AYID 4C4VB 3VE1A 5ADXK 2F1CX 3KVDD 4GF4A 2Y0HA 3GP6A 3VY8X 5EE2A 4GCQA 4AKRB 2ERVA 4AKRA 4Z3TA 2R4NA 2R4OA 1S5LO 3PGSA 1OSMA 1YS5A 5AFUL 3HWBA 3DA3A 5H2FO 1BT9A 3BRYA 3WU2O 2XE3A 4RJWA 2JQYA 1OPFA 3KZIO 4AYEC 2LFUA 2XE1A 1ZHTA 3LK2B 3DWOX 4AYDC 1MM4A 4C69X 2O4VA 3AA0B 3JCUO 3LK2A 3AA0A 3BRZA 5TISO 4GCSA 2X27X 4FOZA 5GTIO 5PRNA 2IWWA 4LSHA 3VZUX 3A0BO 2FGQX 3AA1B 4BUMX 2R88A 3POUA 1ZHYA 3AA1A 4GHBA 4KRAA 3O0EA 4AFKA 2YNKA 4G75A 3HOEA 2XE5A 1GFQA 3VY9X 4JCHA 2KZ7B 4C00A 2IWVA 2XG6A
chains in the Genus database with same CATH topology
5T5FA 2KZ7A 3PQUA 4AZLA 3SY7A 5IYUA 2K4TA 3VE2A 2J4UP 1GFOA 4D5UA 3PRNA 1GFNA 4QQ1A 2MHLA 1IZNB 3QRAA 4FESA 1IZNA 4O4UA 2N2LA 2KXPA 4FT6A 3JTYA 3POXA 5JDPA 1E54A 3AA7A 2KC0A 2KDYA 5DL7A 4O4XA 4O3WA 4D64A 1GFPA 2LHFA 4GCPA 2F1TA 1THQA 3EMNX 1GFMA 3PORA 1HXUA 4XNKA 4O3YA 4B61A 3T0SA 4AKMA 1BXWA 1H6S1 3VZTX 4AYNA 3HW9A 4LSEA 8PRNA 2M07A 1HXTA 4XNLA 4E1TA 4FSPA 3C5OA 3T20A 2QTKA 5FVNA 1ZHXA 5G26A 2XTRA 3PQSA 4JFBA 2XE2A 3TZGA 3FYXA 4O3XB 4LSIA 3LK42 4FUVA 3POQA 1ZHWA 2KXPB 4O49A 1P4TA 2Y0KA 3WI5A 4FRTA 4U9CA 3DA4A 1G90A 3AA7B 3AAAB 3AAEB 5DL6A 2W80C 3AAAA 3AAEA 1HXXA 2OMFA 2ZFGA 1QJ9A 4KR8A 2J1NA 3WI4A 4LSFA 4F4BA 3RBHA 2Y2XA 2XMXA 7PRNA 1QJ8A 3K19A 1Q9GA 2PORA 2MNHA 5GV0A 3NSGA 4FRXA 4FZMA 2PRNA 5D5DA 4E1SA 2Y7SA 4KR4A 4FMSA 4RJXA 4RLBA 2YPVA 2JMMA 3HOLA 4FSOA 1Q9FA 4FZLA 3LK3B 1MM5A 5DL5A 5DL8A 2W81C 3SZDA 3V8UA 3LK3A 3SYBA 5ADXL 1ZHZA 3SZVA 3A2SX 4PUXA 1BH3A 3AA6B 1MPFA 4N59A 3AA6A 4RL9A 1ORMA 3LK41 4AYMC 4N58A 2FGRA 3UU2A 4G76A 4D65A 2Y0LA 2K0LA 3T24A 1PHOA 2ZLDA 3SYSA 6PRNA 2GE4A 3G7GA 3UPGA 2F1VA 4FZNA 2M06A 4O3ZA 1QJPA 2XTQA 4AUIA 1PRNA 2N2MA 3SY9A 3QRCA 3UAQA 3VZWX 5AFUK 2ODJA 4RLCA 4AYID 5ADXK 3VE1A 3KVDD 4GF4A 2Y0HA 3GP6A 3VY8X 5EE2A 4GCQA 4AKRB 2ERVA 4AKRA 4Z3TA 1OSMA 1YS5A 5AFUL 3HWBA 3DA3A 1BT9A 2XE3A 4RJWA 1OPFA 4AYEC 2LFUA 2XE1A 1ZHTA 3LK2B 4AYDC 4C69X 1MM4A 2O4VA 3AA0B 3LK2A 3AA0A 4GCSA 2X27X 4FOZA 5PRNA 4LSHA 3VZUX 2FGQX 3AA1B 4BUMX 3POUA 1ZHYA 3AA1A 4GHBA 4KRAA 3O0EA 4AFKA 2YNKA 4G75A 3HOEA 2XE5A 1GFQA 3VY9X 4JCHA 2KZ7B 2XG6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SY7 A;  2K4T A;  2J4U P;  1GFO A;  4D5U A;  3PRN A;  1GFN A;  4FT6 A;  3JTY A;  3POX A;  5JDP A;  1E54 A;  5DL7 A;  4D64 A;  1GFP A;  4GCP A;  3EMN X;  1GFM A;  3POR A;  1HXU A;  3T0S A;  1H6S 1;  3VZT X;  3HW9 A;  4LSE A;  8PRN A;  1HXT A;  4FSP A;  3T20 A;  2QTK A;  5FVN A;  4JFB A;  2XE2 A;  3FYX A;  4LSI A;  3POQ A;  2Y0K A;  3WI5 A;  4FRT A;  5DL6 A;  1HXX A;  2OMF A;  2ZFG A;  3WI4 A;  4KR8 A;  2J1N A;  4LSF A;  2Y2X A;  7PRN A;  3K19 A;  2POR A;  3NSG A;  4FRX A;  2PRN A;  4KR4 A;  4RJX A;  4FSO A;  5DL5 A;  5DL8 A;  3SZD A;  3SYB A;  3SZV A;  3A2S X;  1BH3 A;  1MPF A;  3UU2 A;  2FGR A;  4D65 A;  2Y0L A;  3T24 A;  1PHO A;  2ZLD A;  6PRN A;  3UPG A;  4AUI A;  1PRN A;  3SY9 A;  3VZW X;  2ODJ A;  2Y0H A;  3VY8 X;  4GCQ A;  1OSM A;  3HWB A;  1BT9 A;  2XE3 A;  4RJW A;  1OPF A;  2XE1 A;  4C69 X;  2O4V A;  4GCS A;  4FOZ A;  5PRN A;  4LSH A;  3VZU X;  2FGQ X;  4BUM X;  3POU A;  4KRA A;  3O0E A;  2XE5 A;  1GFQ A;  3VY9 X;  3SYS A;  4FMS A;  2XG6 A; 
#chains in the Genus database with same CATH topology
 5T5F A;  2KZ7 A;  3PQU A;  4FQE A;  3SY7 A;  4AZL A;  5IYU A;  2K4T A;  3VE2 A;  2J4U P;  1GFO A;  4D5U A;  3PRN A;  1GFN A;  4QQ1 A;  2MHL A;  2R89 A;  4K3C A;  5B66 O;  1IZN B;  5GTH O;  4IL6 O;  3QRA A;  4FES A;  1IZN A;  4O4U A;  2AXT O;  5B5E O;  2N2L A;  2KXP A;  4FT6 A;  3JTY A;  3POX A;  5JDP A;  1E54 A;  3AA7 A;  2KC0 A;  4PR7 A;  2KDY A;  5DL7 A;  4O4X A;  4O3W A;  4D64 A;  1GFP A;  2LHF A;  3BS0 A;  4GCP A;  5KAF O;  2F1T A;  1THQ A;  3EMN X;  1GFM A;  3POR A;  1HXU A;  4XNK A;  4O3Y A;  4B61 A;  3T0S A;  4AKM A;  5G3A A;  1BXW A;  1H6S 1;  2R4P A;  3VZT X;  3NJT A;  4AYN A;  3HW9 A;  4LSE A;  8PRN A;  2M07 A;  2R4L A;  1HXT A;  4XNL A;  4E1T A;  4FSP A;  3C5O A;  3T20 A;  2QTK A;  5FVN A;  1ZHX A;  5G26 A;  4N75 A;  5G39 A;  2XTR A;  3PQS A;  4JFB A;  2XE2 A;  5KAI O;  3TZG A;  3FYX A;  4O3X B;  3DWN A;  4LSI A;  3LK4 2;  4FUV A;  3POQ A;  1ZHW A;  2KXP B;  4O49 A;  1P4T A;  2Y0K A;  3WI5 A;  4FRT A;  4U9C A;  3DA4 A;  1G90 A;  3AA7 B;  3AAA B;  2WJQ A;  3AAE B;  2X9K A;  4PJ0 O;  5DL6 A;  5E79 O;  2W80 C;  3AAA A;  3AAE A;  1HXX A;  4CTD A;  1T16 A;  2OMF A;  1QJ9 A;  2ZFG A;  2J1N A;  3PGU A;  4KR8 A;  3PGR A;  3A0H O;  4LSF A;  3WI4 A;  4F4B A;  3RBH A;  2Y2X A;  2XMX A;  7PRN A;  4C4V A;  1QJ8 A;  3K19 A;  1Q9G A;  2POR A;  2MNH A;  5GV0 A;  3NSG A;  4FRX A;  4FZM A;  2PRN A;  5G38 A;  5D5D A;  4N74 A;  4E1S A;  2Y7S A;  4KR4 A;  4K3B A;  4FMS A;  4RJX A;  4RLB A;  2YPV A;  2JMM A;  3HOL A;  4FSO A;  1Q9F A;  4FZL A;  3LK3 B;  1MM5 A;  5DL5 A;  5DL8 A;  2W81 C;  3SZD A;  3V8U A;  3LK3 A;  3SYB A;  5ADX L;  1ZHZ A;  3SZV A;  3A2S X;  1T1L A;  2WJR A;  4PUX A;  1BH3 A;  3AA6 B;  1MPF A;  4N59 A;  3AA6 A;  4RL9 A;  2WVP A;  1ORM A;  3LK4 1;  4AYM C;  4N58 A;  2FGR A;  3UU2 A;  4G76 A;  4D65 A;  2Y0L A;  2K0L A;  3T24 A;  1PHO A;  2ZLD A;  3DZM A;  3SYS A;  2GE4 A;  3G7G A;  4UB8 O;  2F1V A;  6PRN A;  3UPG A;  4FZN A;  2M06 A;  4O3Z A;  1QJP A;  2XTQ A;  3PF1 A;  4AUI A;  1PRN A;  2N2M A;  4UB6 O;  2R8A A;  3SY9 A;  3QRC A;  3UAQ A;  3VZW X;  5AFU K;  2ODJ A;  4RLC A;  4AYI D;  4C4V B;  3VE1 A;  5ADX K;  2F1C X;  3KVD D;  4GF4 A;  2Y0H A;  3GP6 A;  3VY8 X;  5EE2 A;  4GCQ A;  4AKR B;  2ERV A;  4AKR A;  4Z3T A;  2R4N A;  2R4O A;  1S5L O;  3PGS A;  1OSM A;  1YS5 A;  5AFU L;  3HWB A;  3DA3 A;  5H2F O;  1BT9 A;  3BRY A;  3WU2 O;  2XE3 A;  4RJW A;  2JQY A;  1OPF A;  3KZI O;  4AYE C;  2LFU A;  2XE1 A;  1ZHT A;  3LK2 B;  3DWO X;  4AYD C;  1MM4 A;  4C69 X;  2O4V A;  3AA0 B;  3JCU O;  3LK2 A;  3AA0 A;  3BRZ A;  5TIS O;  4GCS A;  2X27 X;  4FOZ A;  5GTI O;  5PRN A;  2IWW A;  4LSH A;  3VZU X;  3A0B O;  2FGQ X;  3AA1 B;  4BUM X;  2R88 A;  3POU A;  1ZHY A;  3AA1 A;  4GHB A;  4KRA A;  3O0E A;  4AFK A;  2YNK A;  4G75 A;  3HOE A;  2XE5 A;  1GFQ A;  3VY9 X;  4JCH A;  2KZ7 B;  4C00 A;  2IWV A;  2XG6 A; 
#chains in the Genus database with same CATH homology
 5T5F A;  2KZ7 A;  3PQU A;  4AZL A;  3SY7 A;  5IYU A;  2K4T A;  3VE2 A;  2J4U P;  1GFO A;  4D5U A;  3PRN A;  1GFN A;  4QQ1 A;  2MHL A;  1IZN B;  3QRA A;  4FES A;  1IZN A;  4O4U A;  2N2L A;  2KXP A;  4FT6 A;  3JTY A;  3POX A;  5JDP A;  1E54 A;  3AA7 A;  2KC0 A;  2KDY A;  5DL7 A;  4O4X A;  4O3W A;  4D64 A;  1GFP A;  2LHF A;  4GCP A;  2F1T A;  1THQ A;  3EMN X;  1GFM A;  3POR A;  1HXU A;  4XNK A;  4O3Y A;  4B61 A;  3T0S A;  4AKM A;  1BXW A;  1H6S 1;  3VZT X;  4AYN A;  3HW9 A;  4LSE A;  8PRN A;  2M07 A;  1HXT A;  4XNL A;  4E1T A;  4FSP A;  3C5O A;  3T20 A;  2QTK A;  5FVN A;  1ZHX A;  5G26 A;  2XTR A;  3PQS A;  4JFB A;  2XE2 A;  3TZG A;  3FYX A;  4O3X B;  4LSI A;  3LK4 2;  4FUV A;  3POQ A;  1ZHW A;  2KXP B;  4O49 A;  1P4T A;  2Y0K A;  3WI5 A;  4FRT A;  4U9C A;  3DA4 A;  1G90 A;  3AA7 B;  3AAA B;  3AAE B;  5DL6 A;  2W80 C;  3AAA A;  3AAE A;  1HXX A;  2OMF A;  2ZFG A;  1QJ9 A;  4KR8 A;  2J1N A;  3WI4 A;  4LSF A;  4F4B A;  3RBH A;  2Y2X A;  2XMX A;  7PRN A;  1QJ8 A;  3K19 A;  1Q9G A;  2POR A;  2MNH A;  5GV0 A;  3NSG A;  4FRX A;  4FZM A;  2PRN A;  5D5D A;  4E1S A;  2Y7S A;  4KR4 A;  4FMS A;  4RJX A;  4RLB A;  2YPV A;  2JMM A;  3HOL A;  4FSO A;  1Q9F A;  4FZL A;  3LK3 B;  1MM5 A;  5DL5 A;  5DL8 A;  2W81 C;  3SZD A;  3V8U A;  3LK3 A;  3SYB A;  5ADX L;  1ZHZ A;  3SZV A;  3A2S X;  4PUX A;  1BH3 A;  3AA6 B;  1MPF A;  4N59 A;  3AA6 A;  4RL9 A;  1ORM A;  3LK4 1;  4AYM C;  4N58 A;  2FGR A;  3UU2 A;  4G76 A;  4D65 A;  2Y0L A;  2K0L A;  3T24 A;  1PHO A;  2ZLD A;  3SYS A;  6PRN A;  2GE4 A;  3G7G A;  3UPG A;  2F1V A;  4FZN A;  2M06 A;  4O3Z A;  1QJP A;  2XTQ A;  4AUI A;  1PRN A;  2N2M A;  3SY9 A;  3QRC A;  3UAQ A;  3VZW X;  5AFU K;  2ODJ A;  4RLC A;  4AYI D;  5ADX K;  3VE1 A;  3KVD D;  4GF4 A;  2Y0H A;  3GP6 A;  3VY8 X;  5EE2 A;  4GCQ A;  4AKR B;  2ERV A;  4AKR A;  4Z3T A;  1OSM A;  1YS5 A;  5AFU L;  3HWB A;  3DA3 A;  1BT9 A;  2XE3 A;  4RJW A;  1OPF A;  4AYE C;  2LFU A;  2XE1 A;  1ZHT A;  3LK2 B;  4AYD C;  4C69 X;  1MM4 A;  2O4V A;  3AA0 B;  3LK2 A;  3AA0 A;  4GCS A;  2X27 X;  4FOZ A;  5PRN A;  4LSH A;  3VZU X;  2FGQ X;  3AA1 B;  4BUM X;  3POU A;  1ZHY A;  3AA1 A;  4GHB A;  4KRA A;  3O0E A;  4AFK A;  2YNK A;  4G75 A;  3HOE A;  2XE5 A;  1GFQ A;  3VY9 X;  4JCH A;  2KZ7 B;  2XG6 A; 
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